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MacroAPE 1083:ARAGGGGK,motif561: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1411.882;2.326;909.466;2.326!2;1167.652;179.102;976.92;2.326!3;1902.668;2.326;418.68;2.326!4;853.642;134.908;1335.124;2.326!5;234.926;95.366...")
 
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8-110H5;0.81779!10792-110H9;0.715779!10765-110E9;0.390181!10829-111D1;0.846876!10830-111D2;0.622467!10831-111D3;0.245001!10832-111D4;0.68109!10833-111D5;0.895686!10764-110E8;0.962083!10770-110F5;0.865343!10399-106A3;0.942561!10400-106A4;0.750952!10405-106A9;0.683025!10834-111D6;0.600761!10835-111D7;0.268673!10836-111D8;0.193205!10837-111D9;0.0612307!10699-109G6;0.914031!10802-111A1;0.762508!10796-110I4;0.883265!10010-101C1;0.710956!10810-111A9;0.448215!10421-106C7;0.0949158!10708-109H6;0.628075!12235-129G3;0.0230901!12236-129G4;0.732486!12237-129G5;0.440496!10167-103B5;0.552713!10151-102I7;0.629374!10428-106D5;0.438408!10795-110I3;0.0236689!10805-111A4;0.728394!10052-101G7;0.261189!10189-103D9;0.14765!10589-108D4;0.130521!10425-106D2;0.0886007!10427-106D4;0.0281067!10702-109G9;0.854549!10432-106D9;0.523569!10496-107C1;0.360013!10718-109I7;0.859839!10011-101C2;0.893446!10053-101G8;0.20264!10686-109F2;0.294093!10084-102B3;0.593857!10012-101C3;0.691573!10085-102B4;0.528073!10482-107A5;0.629184!10419-106C5;0.0639482!10080-102A8;0.0526281!10760-110E4;0.773297!10709-109H7;0.346304!10710-109H8;0.245999!10703-109H1;0.322142!10719-109I8;0.093969!10642-109A3;0.026783!10177-103C6;0.491631!10164-103B2;0.478209!10173-103C2;0.425114!10166-103B4;0.444164!10083-102B2;0.37932!10188-103D8;0.364186!10552-107I3;0.555438!10553-107I4;0.706051!10013-101C4;0.279244!10536-107G5;0.127902!10618-108G6;0.36967!10423-106C9;0.491019!10785-110H2;0.532507!12238-129G6;0.776683!12239-129G7;0.526483!12240-129G8;0.80133!10416-106C2;0.0792904!10801-110I9;0.605099!10766-110F1;0.82211!10824-111C5;0.843174!10825-111C6;0.968883!10826-111C7;0.954742!10454-106G4;0.960458!10409-106B4;0.805867!10638-108I8;0.927898!10636-108I6;0.0764155!10513-107D9;0.0587036!10420-106C6;0.0767485!10082-102B1;0.624483!10014-101C5;0.293239!10070-101I7;0.292239!10452-106G2;0.462786!10453-106G3;0.101027!10449-106F8;0.181058!10042-101F6;0.151535!10069-101I6;0.390539!10193-103E4;0.221759!10631-108I1;0.566376!10438-106E6;0.408855!10488-107B2;0.637379!10196-103E7;0.578857!10071-101I8;0.366208!10071-101I8;0.335984!10041-101F5;0.592132!10451-106G1;0.31296!10450-106F9;0.153758!10604-108F1;0.298494!10605-108F2;0.0457035!10606-108F3;0.196367!10603-108E9;0.0948504!10497-107C2;0.215152!10448-106F7;0.106784!10643-109A4;0.0851754!10426-106D3;0.482492!10431-106D8;0.480641!10197-103E8;0.308515!10443-106F2;0.0744038!10815-111B5;0.0753058!10816-111B6;0.228676!10817-111B7;0.107767!10015-101C6;0.225173!10410-106B5;0.245268!10054-101G9;0.368834!10758-110E2;0.263756!10711-109H9;0.0794803!10040-101F4;0.0918427!10470-106I2;0.598782!10415-106C1;0.495869!10198-103E9;0.313167!10614-108G2;0.163782!10612-108F9;0.175514!10549-107H9;0.276386!10615-108G3;0.177641!10487-107B1;0.30771!10433-106E1;0.339493!10688-109F4;0.494143!10444-106F3;0.566011!10444-106F3;0.198445!10485-107A8;0.200944!10413-106B8;0.0521912!10175-103C4;0.0486614!10161-103A8;0.512115!12131-128D7;0.309777!10624-108H3;0.686361!10712-109I1;0.411903!10205-103F7;0.234314!10206-103F8;0.0768266!10207-103F9;0.114321!10050-101G5;0.176313!10051-101G6;0.398771!10016-101C7;0.20437!10046-101G1;0.403958!10778-110G4;0.2838!10633-108I3;0.278872!10818-111B8;0.0066947!10819-111B9;0.195215!10820-111C1;0.21187!10484-107A7;0.210796!10808-111A7;0.0398107!10169-103B7;0.93469!10153-102I9;0.56999!13425-144D5;0.409552!13433-144E4;0.143908!13437-144E8;0.0850168!11904-125F5;0.0878268!11905-125F6;0.515957!10039-101F3;0.697551!10791-110H8;0.544687!10017-101C8;0.220596!10045-101F9;0.790601!10509-107D5;0.643314!10839-111E2;0.336243!10692-109F8;0.897581!10079-102A7;0.187739!10078-102A6;0.255358!10721-110A1;0.424819!10569-108B2;0.0690441!10570-108B3;0.851774!10571-108B4;0.498632!10647-109A8;0.375365!10752-110D5;0.0689229!10782-110G8;0.396255!10726-110A6;0.70954!10018-101C9;0.0521186!10086-102B5;0.876163!10182-103D2;0.305074!10165-103B3;0.388788!10499-107C4;0.317077!10408-106B3;0.0325966!10019-101D1;0.438125!10068-101I5;0.320509!10075-102A3;0.23677!10077-102A5;0.166197!10727-110A7;0.489856!10775-110G1;0.655251!10412-106B7;0.512879!12231-129F8;0.723034!12232-129F9;0.370972!12233-129G1;0.556612!12234-129G2;0.711216!10414-106B9;0.567501!10170-103B8;0.0293167!10183-103D3;0.640105!10150-102I6;0.489645!10174-103C3;0.414587!10155-103A2;0.383806!10038-101F2;0.243583!10838-111E1;0.315682!10759-110E3;0.128689!10514-107E1;0.0434739!10465-106H6;0.0229531!10691-109F7;0.272067!10843-111E6;0.450601!10844-111E7;0.203542!11747-123G1;0.243442!11748-123G2;0.656693!11749-123G3;0.44747!11750-123G4;0.769356!11751-123G5;0.846134!11840-124H4;0.589565!11752-123G6;0.938179!11753-123G7;0.139485!11754-123G8;0.455514!11755-123G9;0.349909!11756-123H1;0.0890621!11833-124G6;0.390805!11760-123H5;0.0461228!11836-124G9;0.149323!11758-123H3;0.989625!11835-124G8;0.574116!11762-123H7;0.628679!11838-124H2;0.513069!11757-123H2;0.431184!11759-123H4;0.959922!11761-123H6;0.106221!11842-124H6;0.847614!11837-124H1;0.0449193!10568-108B1;0.767892!13230-141I8;0.674393!13231-141I9;0.266234!10696-109G3;0.47995!10493-107B7;0.677599!10494-107B8;0.0284556!10850-111F4;0.140957!10851-111F5;0.187008!10852-111F6;0.143618!10853-111F7;0.514319!10854-111F8;0.125016!10855-111F9;0.970543!10856-111G1;0.643314!10847-111F1;0.905639!10846-111E9;0.653176!10848-111F2;0.878399!10845-111E8;0.841903!10857-111G2;0.0843817!10858-111G3;0.979582!10156-103A3;0.127579!11901-125F2;0.425121!11902-125F3;0.490957!11903-125F4;0.481166!10689-109F5;0.71758!10648-109A9;0.175567!10784-110H1;0.0664337!10744-110C6;0.0955512!10772-110F7;0.566995!10474-106I6;0.671682!10600-108E6;0.698889!10684-109E9;0.0314506!12226-129F3;0.273342!12227-129F4;0.711156!10508-107D4;0.0342816!10539-107G8;0.586242!10607-108F4;0.299905!10555-107I6;0.194637!10774-110F9;0.45053!10637-108I7;0.343644!10663-109C6;0.670661!10728-110A8;0.434602!10729-110A9;0.519695!10430-106D7;0.565001!10730-110B1;0.456466!10813-111B3;0.269194!10812-111B2;0.980783!10037-101F1;0.902642!10172-103C1;0.556128!10163-103B1;0.496595!10076-102A4;0.338741!10073-102A1;0.583363!10036-101E9;0.551328!10195-103E6;0.611664!10277-104E7;0.438821!10434-106E2;0.486072!10550-107I1;0.0397847!10545-107H5;0.0357683!10544-107H4;0.981031!10704-109H2;0.489929!10510-107D6;0.930562!10558-107I9;0.123676!10020-101D2;0.236567!10732-110B3;0.414294!10049-101G4;0.0980621!10698-109G5;0.266171!10437-106E5;0.553373!10417-106C3;0.578657!10035-101E8;0.103965!10171-103B9;0.606247!10157-103A4;0.52246!10034-101E7;0.441145!10072-101I9;0.62115!10199-103F1;0.60719!10200-103F2;0.568007!10697-109G4;0.0944394!10723-110A3;0.325041!10179-103C8;0.397778!10160-103A7;0.511831!10180-103C9;0.428615!10162-103A9;0.782973!10021-101D3;0.517926!10840-111E3;0.16506!10706-109H4;0.521032!10033-101E6;0.0816259!10032-101E5;0.33993!10490-107B4;0.591436!10439-106E7;0.208296!10022-101D4;0.0371499!10176-103C5;0.175011!10469-106I1;0.529091!10067-101I4;0.274554!10411-106B6;0.461242!10471-106I3;0.171447!10030-101E3;0.210391!10475-106I7;0.270592!10787-110H4;0.201783!10477-106I9;0.0496414!10695-109G2;0.68567!11771-123I7;0.689449!11772-123I8;0.41517!11773-123I9;0.221764!10093-102C3;0.431292!10442-106F1;0.162033!10442-106F1;0.188566!10201-103F3;0.119462!10639-108I9;0.187387!11843-124H7;0.18908!11841-124H5;0.0991868!10693-109F9;0.389451!10436-106E4;0.259799!10483-107A6;0.231684!10282-104F3;0.480145!10023-101D5;0.348401!10066-101I3;0.316734!10065-101I2;0.346306!10800-110I8;0.146305!10610-108F7;0.0389163!10841-111E4;0.487019!10541-107H1;0.118117!10842-111E5;0.124808!10562-108A4;0.196697!10024-101D6;0.0381882!10064-101I1;0.220671!10609-108F6;0.467462!10048-101G3;0.120298!10781-110G7;0.101573!10181-103D1;0.398105!10159-103A6;0.290641!10056-101H2;0.229102!10737-110B8;0.455034!10025-101D7;0.783132!10044-101F8;0.531357!10424-106D1;0.469306!10463-106H4;0.94202!10616-108G4;0.473917!10486-107A9;0.060553!10062-101H8;0.180943!10202-103F4;0.646067!10158-103A5;0.179137!10441-106E9;0.249296!10031-101E4;0.134294!10063-101H9;0.581547!10063-101H9;0.587414!11763-123H8;0.105006!11765-123I1;0.259353!11768-123I4;0.227197!10807-111A6;0.19088!10790-110H7;0.379339!10798-110I6;0.183113!10786-110H3;0.120029!10591-108D6;0.178755!10593-108D8;0.417566!10590-108D5;0.586208!10026-101D8;0.0773623!10096-102C6;0.851224!10168-103B6;0.548676!10154-103A1;0.562015!10209-103G2;0.304213!10061-101H7;0.0967341!10027-101D9;0.292884!10043-101F7;0.753245!10783-110G9;0.949532!10028-101E1;0.576172!10060-101H6;0.400876!10203-103F5;0.17447!10059-101H5;0.0894117!10047-101G2;0.202659!10029-101E2;0.246311!10058-101H4;0.384291!10418-106C4;0.291353!10492-107B6;0.0515034!10694-109G1;0.246168!10797-110I5;0.289212!10057-101H3;0.346653!10100-102D1;0.240291!10055-101H1;0.124274!10204-103F6;0.264083!10191-103E2;0.304859!10563-108A5;0.159426
|name=ARAGGGGK,motif561,CNhs13793,T:2326.0(51.61%),B:30125.2(42.94%),P:1e-31
|name=ARAGGGGK,motif561,CNhs13793,T:2326.0(51.61%),B:30125.2(42.94%),P:1e-31
|tomtom_result=Kr#MA0452.1;1;2.00453e-05;0.00954155;0.0190178;8;AAAGGGGG;CAAAAGGGTTA;+!MSN4#MA0342.1;-2;0.000318438;0.151576;0.141561;5;AAAGGGGG;AGGGG;+!MSN2#MA0341.1;-2;0.000526894;0.250802;0.141561;5;AAAGGGGG;AGGGG;+!RGM1#MA0366.1;-2;0.000596834;0.284093;0.141561;5;AAAGGGGG;AGGGG;+!YER130C#MA0423.1;1;0.00129004;0.614058;0.244783;8;AAAGGGGG;AATAGGGGT;-!MZF1_5-13#MA0057.1;0;0.00235459;1.12079;0.372317;8;AAAGGGGG;GGAGGGGGAA;+!GIS1#MA0306.1;1;0.00385523;1.83509;0.522518;8;AAAGGGGG;TTTAGGGGT;-!btd#MA0443.1;-2;0.00448246;2.13365;0.531588;6;AAAGGGGG;AGGGGGCGGA;+!Klf4#MA0039.1;4;0.00605034;2.87996;0.574022;6;AAAGGGGG;TAAAGGAAGG;+!SP1#MA0079.2;3;0.00605034;2.87996;0.574022;7;AAAGGGGG;GGGGGCGGGG;-!YML081W#MA0431.1;1;0.0092214;4.38939;0.79534;8;AAAGGGGG;GTGCGGGGT;-!TBP#MA0108.2;5;0.012907;6.14372;0.980422;8;AAAGGGGG;GTATAAAAGGCGGGG;+!TBP#MA0108.2;5;0.0138221;6.57934;0.980422;8;AAAGGGGG;GTATAAAAGGCGGGG;+!PLAG1#MA0163.1;6;0.0152644;7.26586;0.980422;8;AAAGGGGG;GGGGCCCAAGGGGG;+!RXR::RAR_DR5#MA0159.1;7;0.0165411;7.87357;0.980422;8;AAAGGGGG;AGGTCATGGAGAGGTCA;+!Pax4#MA0068.1;0;0.0170603;8.12071;0.980422;8;AAAGGGGG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!SP1#MA0079.2;-1;0.0179213;8.53054;0.980422;7;AAAGGGGG;GGGGCGGGGT;+!YGR067C#MA0425.1;6;0.018601;8.85408;0.980422;8;AAAGGGGG;TGAAAAAGTGGGGT;-!FKH1#MA0296.1;12;0.0206055;9.80823;0.99658;8;AAAGGGGG;TGAATTGTAAACAAAGAGGA;+
}}
}}

Latest revision as of 13:52, 7 September 2012

Full Name: ARAGGGGK,motif561,CNhs13793,T:2326.0(51.61%),B:30125.2(42.94%),P:1e-31

Motif matrix
POACGT
11411.8822.326909.4662.326
21167.652179.102976.922.326
31902.6682.326418.682.326
4853.642134.9081335.1242.326
5234.92695.3661993.3822.326
6330.292597.7821297.908100.018
727.9122.3261688.676607.086
869.7830.2381135.0881090.894

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Kr#MA0452.112.00453e-050.009541550.01901788AAAGGGGGCAAAAGGGTTA+
MSN4#MA0342.1-20.0003184380.1515760.1415615AAAGGGGGAGGGG+
MSN2#MA0341.1-20.0005268940.2508020.1415615AAAGGGGGAGGGG+
RGM1#MA0366.1-20.0005968340.2840930.1415615AAAGGGGGAGGGG+
YER130C#MA0423.110.001290040.6140580.2447838AAAGGGGGAATAGGGGT-
MZF1_5-13#MA0057.100.002354591.120790.3723178AAAGGGGGGGAGGGGGAA+
GIS1#MA0306.110.003855231.835090.5225188AAAGGGGGTTTAGGGGT-
btd#MA0443.1-20.004482462.133650.5315886AAAGGGGGAGGGGGCGGA+
Klf4#MA0039.140.006050342.879960.5740226AAAGGGGGTAAAGGAAGG+
SP1#MA0079.230.006050342.879960.5740227AAAGGGGGGGGGGCGGGG-
YML081W#MA0431.110.00922144.389390.795348AAAGGGGGGTGCGGGGT-
TBP#MA0108.250.0129076.143720.9804228AAAGGGGGGTATAAAAGGCGGGG+
TBP#MA0108.250.01382216.579340.9804228AAAGGGGGGTATAAAAGGCGGGG+
PLAG1#MA0163.160.01526447.265860.9804228AAAGGGGGGGGGCCCAAGGGGG+
RXR::RAR_DR5#MA0159.170.01654117.873570.9804228AAAGGGGGAGGTCATGGAGAGGTCA+
Pax4#MA0068.100.01706038.120710.9804228AAAGGGGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
SP1#MA0079.2-10.01792138.530540.9804227AAAGGGGGGGGGCGGGGT+
YGR067C#MA0425.160.0186018.854080.9804228AAAGGGGGTGAAAAAGTGGGGT-
FKH1#MA0296.1120.02060559.808230.996588AAAGGGGGTGAATTGTAAACAAAGAGGA+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:ARAGGGGK,motif561&oldid=2134158"