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MacroAPE 1083:4-NTGTTTTTTTKTC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;305.37;280.488;249.951;295.191!2;220.545;257.868;191.139;460.317!3;230.724;246.558;481.806;171.912!4;5.655;23.751;5.655;1095.939!5;49.764;5....")
 
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238!10828-111C9;0.922022!10788-110H5;0.61347!10792-110H9;0.168547!10765-110E9;0.509414!10829-111D1;0.981316!10830-111D2;0.07305!10831-111D3;0.365729!10832-111D4;0.672256!10833-111D5;0.939586!10764-110E8;0.558695!10770-110F5;0.548871!10399-106A3;0.821174!10400-106A4;0.24717!10405-106A9;0.273271!10834-111D6;0.250931!10835-111D7;0.10229!10836-111D8;0.590824!10837-111D9;0.791087!10699-109G6;0.131027!10802-111A1;0.397287!10796-110I4;0.672298!10010-101C1;0.999584!10810-111A9;0.472169!10421-106C7;0.913057!10708-109H6;0.76051!12235-129G3;0.641819!12236-129G4;0.445993!12237-129G5;0.335647!10167-103B5;0.778821!10151-102I7;0.377631!10428-106D5;0.172306!10795-110I3;0.749327!10805-111A4;0.329811!10052-101G7;0.470063!10189-103D9;0.213135!10589-108D4;0.295565!10425-106D2;0.839436!10427-106D4;0.266365!10702-109G9;0.4235!10432-106D9;0.112935!10496-107C1;0.553818!10718-109I7;0.229439!10011-101C2;0.651705!10053-101G8;0.342123!10686-109F2;0.818447!10084-102B3;0.597742!10012-101C3;0.150811!10085-102B4;0.186278!10482-107A5;0.318899!10419-106C5;0.903538!10080-102A8;0.460268!10760-110E4;0.202044!10709-109H7;0.0826935!10710-109H8;0.800654!10703-109H1;0.220005!10719-109I8;0.936288!10642-109A3;0.216959!10177-103C6;0.874631!10164-103B2;0.179614!10173-103C2;0.191412!10166-103B4;0.116383!10083-102B2;0.192565!10188-103D8;0.246744!10552-107I3;0.373867!10553-107I4;0.535213!10013-101C4;0.719864!10536-107G5;0.1447!10618-108G6;0.365081!10423-106C9;0.63079!10785-110H2;0.807614!12238-129G6;0.978502!12239-129G7;0.485642!12240-129G8;0.783307!10416-106C2;0.815955!10801-110I9;0.0923361!10766-110F1;0.976548!10824-111C5;0.450049!10825-111C6;0.32486!10826-111C7;0.357064!10454-106G4;0.263633!10409-106B4;0.39647!10638-108I8;0.631196!10636-108I6;0.331387!10513-107D9;0.208059!10420-106C6;0.726953!10082-102B1;0.889949!10014-101C5;0.0225995!10070-101I7;0.255371!10452-106G2;0.192532!10453-106G3;0.703747!10449-106F8;0.597024!10042-101F6;0.581654!10069-101I6;0.038625!10193-103E4;0.105488!10631-108I1;0.118077!10438-106E6;0.335735!10488-107B2;0.605578!10196-103E7;0.576531!10071-101I8;0.149142!10071-101I8;0.383163!10041-101F5;0.661635!10451-106G1;0.705511!10450-106F9;0.20714!10604-108F1;0.657342!10605-108F2;0.722572!10606-108F3;0.91755!10603-108E9;0.990931!10497-107C2;0.986169!10448-106F7;0.930593!10643-109A4;0.858206!10426-106D3;0.807307!10431-106D8;0.801496!10197-103E8;0.976466!10443-106F2;0.680867!10815-111B5;0.661881!10816-111B6;0.966078!10817-111B7;0.839195!10015-101C6;0.976234!10410-106B5;0.267767!10054-101G9;0.893894!10758-110E2;0.35619!10711-109H9;0.712377!10040-101F4;0.781672!10470-106I2;0.25234!10415-106C1;0.481593!10198-103E9;0.257217!10614-108G2;0.350816!10612-108F9;0.505932!10549-107H9;0.606598!10615-108G3;0.869302!10487-107B1;0.992614!10433-106E1;0.686254!10688-109F4;0.324872!10444-106F3;0.852908!10444-106F3;0.73717!10485-107A8;0.621213!10413-106B8;0.105702!10175-103C4;0.845016!10161-103A8;0.164495!12131-128D7;0.0388813!10624-108H3;0.610689!10712-109I1;0.14159!10205-103F7;0.346221!10206-103F8;0.0573492!10207-103F9;0.054815!10050-101G5;0.0957423!10051-101G6;0.0186821!10016-101C7;0.040158!10046-101G1;0.031571!10778-110G4;0.0225301!10633-108I3;0.33274!10818-111B8;0.714186!10819-111B9;0.893079!10820-111C1;0.887793!10484-107A7;0.970428!10808-111A7;0.561937!10169-103B7;0.26944!10153-102I9;0.305634!13425-144D5;0.113586!13433-144E4;0.703663!13437-144E8;0.493369!11904-125F5;0.345412!11905-125F6;0.389796!10039-101F3;0.867267!10791-110H8;0.220044!10017-101C8;0.626228!10045-101F9;0.310351!10509-107D5;0.0904856!10839-111E2;0.761774!10692-109F8;0.105753!10079-102A7;0.947706!10078-102A6;0.0242742!10721-110A1;0.0224854!10569-108B2;0.175078!10570-108B3;0.302551!10571-108B4;0.249419!10647-109A8;0.686707!10752-110D5;0.259766!10782-110G8;0.100951!10726-110A6;0.973166!10018-101C9;0.0433003!10086-102B5;0.887926!10182-103D2;0.201179!10165-103B3;0.103375!10499-107C4;0.109795!10408-106B3;0.710829!10019-101D1;0.692083!10068-101I5;0.669915!10075-102A3;0.403923!10077-102A5;0.651675!10727-110A7;0.827313!10775-110G1;0.131551!10412-106B7;0.742064!12231-129F8;0.58155!12232-129F9;0.466496!12233-129G1;0.31013!12234-129G2;0.720239!10414-106B9;0.460122!10170-103B8;0.930281!10183-103D3;0.340061!10150-102I6;0.312631!10174-103C3;0.131992!10155-103A2;0.0569697!10038-101F2;0.0572985!10838-111E1;0.0920322!10759-110E3;0.869595!10514-107E1;0.778208!10465-106H6;0.626033!10691-109F7;0.393721!10843-111E6;0.771462!10844-111E7;0.853547!11747-123G1;0.944849!11748-123G2;0.579497!11749-123G3;0.939167!11750-123G4;0.959621!11751-123G5;0.693981!11840-124H4;0.579304!11752-123G6;0.213296!11753-123G7;0.65426!11754-123G8;0.957115!11755-123G9;0.200797!11756-123H1;0.189011!11833-124G6;0.368176!11760-123H5;0.798325!11836-124G9;0.530497!11758-123H3;0.777417!11835-124G8;0.196947!11762-123H7;0.73408!11838-124H2;0.617666!11757-123H2;0.882715!11759-123H4;0.261951!11761-123H6;0.345544!11842-124H6;0.828795!11837-124H1;0.84158!10568-108B1;0.639823!13230-141I8;0.417144!13231-141I9;0.828789!10696-109G3;0.56637!10493-107B7;0.723919!10494-107B8;0.699367!10850-111F4;0.24568!10851-111F5;0.964827!10852-111F6;0.899085!10853-111F7;0.727747!10854-111F8;0.827089!10855-111F9;0.572114!10856-111G1;0.357691!10847-111F1;0.375611!10846-111E9;0.741598!10848-111F2;0.499596!10845-111E8;0.906407!10857-111G2;0.0991326!10858-111G3;0.668993!10156-103A3;0.480283!11901-125F2;0.102085!11902-125F3;0.298257!11903-125F4;0.459863!10689-109F5;0.430146!10648-109A9;0.601946!10784-110H1;0.391305!10744-110C6;0.447604!10772-110F7;0.841143!10474-106I6;0.752494!10600-108E6;0.659395!10684-109E9;0.213902!12226-129F3;0.301663!12227-129F4;0.50277!10508-107D4;0.381063!10539-107G8;0.980191!10607-108F4;0.895238!10555-107I6;0.713656!10774-110F9;0.832395!10637-108I7;0.600253!10663-109C6;0.617359!10728-110A8;0.803951!10729-110A9;0.320751!10430-106D7;0.617789!10730-110B1;0.642358!10813-111B3;0.379286!10812-111B2;0.890796!10037-101F1;0.493603!10172-103C1;0.199322!10163-103B1;0.155028!10076-102A4;0.0491909!10073-102A1;0.213733!10036-101E9;0.575414!10195-103E6;0.15058!10277-104E7;0.25208!10434-106E2;0.0272948!10550-107I1;0.460386!10545-107H5;0.0497443!10544-107H4;0.230816!10704-109H2;0.388667!10510-107D6;0.430839!10558-107I9;0.776599!10020-101D2;0.70402!10732-110B3;0.28063!10049-101G4;0.344718!10698-109G5;0.847625!10437-106E5;0.873119!10417-106C3;0.853826!10035-101E8;0.588913!10171-103B9;0.166203!10157-103A4;0.237869!10034-101E7;0.100037!10072-101I9;0.156907!10199-103F1;0.523173!10200-103F2;0.146501!10697-109G4;0.0998156!10723-110A3;0.316806!10179-103C8;0.744205!10160-103A7;0.187858!10180-103C9;0.267095!10162-103A9;0.359846!10021-101D3;0.133606!10840-111E3;0.0662068!10706-109H4;0.235667!10033-101E6;0.0143264!10032-101E5;0.12554!10490-107B4;0.201924!10439-106E7;0.449919!10022-101D4;0.597969!10176-103C5;0.028408!10469-106I1;0.22023!10067-101I4;0.57188!10411-106B6;0.311328!10471-106I3;0.560584!10030-101E3;0.492!10475-106I7;0.136196!10787-110H4;0.976703!10477-106I9;0.106314!10695-109G2;0.244533!11771-123I7;0.466339!11772-123I8;0.973558!11773-123I9;0.664448!10093-102C3;0.33074!10442-106F1;0.298371!10442-106F1;0.769415!10201-103F3;0.93107!10639-108I9;0.329065!11843-124H7;0.878889!11841-124H5;0.723523!10693-109F9;0.247356!10436-106E4;0.54744!10483-107A6;0.959869!10282-104F3;0.080163!10023-101D5;0.196852!10066-101I3;0.116029!10065-101I2;0.0247583!10800-110I8;0.0115342!10610-108F7;0.922332!10841-111E4;0.0960847!10541-107H1;0.577757!10842-111E5;0.274178!10562-108A4;0.928284!10024-101D6;0.790955!10064-101I1;0.300857!10609-108F6;0.535964!10048-101G3;0.836014!10781-110G7;0.183384!10181-103D1;0.980829!10159-103A6;0.105653!10056-101H2;0.0801021!10737-110B8;0.194815!10025-101D7;0.402922!10044-101F8;0.952209!10424-106D1;0.427168!10463-106H4;0.374422!10616-108G4;0.663224!10486-107A9;0.791905!10062-101H8;0.664048!10202-103F4;0.089933!10158-103A5;0.633532!10441-106E9;0.0374546!10031-101E4;0.597428!10063-101H9;0.277807!10063-101H9;0.568755!11763-123H8;0.857327!11765-123I1;0.322513!11768-123I4;0.603747!10807-111A6;0.853605!10790-110H7;0.89023!10798-110I6;0.886251!10786-110H3;0.730169!10591-108D6;0.289155!10593-108D8;0.293637!10590-108D5;0.253947!10026-101D8;0.250489!10096-102C6;0.808441!10168-103B6;0.963226!10154-103A1;0.0909847!10209-103G2;0.0487479!10061-101H7;0.248607!10027-101D9;0.082484!10043-101F7;0.602705!10783-110G9;0.628114!10028-101E1;0.848233!10060-101H6;0.119026!10203-103F5;0.143823!10059-101H5;0.280343!10047-101G2;0.131195!10029-101E2;0.527073!10058-101H4;0.562913!10418-106C4;0.192392!10492-107B6;0.329491!10694-109G1;0.520098!10797-110I5;0.222543!10057-101H3;0.577371!10100-102D1;0.20225!10055-101H1;0.061289!10204-103F6;0.0468679!10191-103E2;0.049025!10563-108A5;0.436888
|name=4-NTGTTTTTTTKTC,CNhs13238,BestGuess:Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq/Homer(0.720601838754395),T:1131.0(43.60%),B:14362.2(32.67%),P:1e-30
|name=4-NTGTTTTTTTKTC,CNhs13238,BestGuess:Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq/Homer(0.720601838754395),T:1131.0(43.60%),B:14362.2(32.67%),P:1e-30
|tomtom_result=hb#MA0049.1;-3;3.35157e-05;0.0159535;0.0318315;10;ATGTTTTTTTTTC;TTTTTTATGC;-!NDT80#MA0343.1;2;0.000302287;0.143889;0.143549;13;ATGTTTTTTTTTC;TTGCGTTTTTGTGGCCGGAAA;-!AZF1#MA0277.1;-3;0.00217782;1.03664;0.605295;9;ATGTTTTTTTTTC;TTTCTTTTT;-!Foxd3#MA0041.1;2;0.00254929;1.21346;0.605295;10;ATGTTTTTTTTTC;GAATGTTTGTTT;+!FKH1#MA0296.1;1;0.00357403;1.70124;0.673571;13;ATGTTTTTTTTTC;TCCTCTTTGTTTACAATTCA;-!STAT1#MA0137.1;0;0.00425679;2.02623;0.673571;13;ATGTTTTTTTTTC;CAGTTTCATTTTCC;-!FOXI1#MA0042.1;2;0.00496447;2.36309;0.673571;10;ATGTTTTTTTTTC;GGATGTTTGTTT;+!id1#MA0120.1;-2;0.00682895;3.25058;0.810724;11;ATGTTTTTTTTTC;TTTTCCTTTTCG;+!Evi1#MA0029.1;-1;0.00872093;4.15116;0.920299;12;ATGTTTTTTTTTC;TGTTATCTTATCTT;-!br_Z1#MA0010.1;1;0.0112764;5.36758;0.997635;13;ATGTTTTTTTTTC;GATTTGTCTATTAC;-!HMG-I/Y#MA0045.1;0;0.0162873;7.75274;0.997635;13;ATGTTTTTTTTTC;GTTTTTCCATTTGTTG;-!SFP1#MA0378.1;7;0.0168423;8.01691;0.997635;13;ATGTTTTTTTTTC;CCGTAGAAAATTTTTTTCAAT;-!HCM1#MA0317.1;-3;0.0185912;8.84939;0.997635;8;ATGTTTTTTTTTC;TTGTTTAT;-!br_Z3#MA0012.1;-1;0.0193611;9.21589;0.997635;11;ATGTTTTTTTTTC;CTTTTAGTTTA;-
}}
}}

Latest revision as of 14:16, 7 September 2012

Full Name: 4-NTGTTTTTTTKTC,CNhs13238,BestGuess:Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq/Homer(0.720601838754395),T:1131.0(43.60%),B:14362.2(32.67%),P:1e-30

Motif matrix
POACGT
1305.37280.488249.951295.191
2220.545257.868191.139460.317
3230.724246.558481.806171.912
45.65523.7515.6551095.939
549.7645.65539.5851035.996
640.7165.65593.873990.756
71.13185.9565.6551038.258
81.13176.908173.043879.918
9213.75961.074158.34697.827
1076.90826.01318.0961009.983
1198.397135.72391.326505.557
12261.26195.004228.462546.273
1315.8341086.8911.13127.144

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
hb#MA0049.1-33.35157e-050.01595350.031831510ATGTTTTTTTTTCTTTTTTATGC-
NDT80#MA0343.120.0003022870.1438890.14354913ATGTTTTTTTTTCTTGCGTTTTTGTGGCCGGAAA-
AZF1#MA0277.1-30.002177821.036640.6052959ATGTTTTTTTTTCTTTCTTTTT-
Foxd3#MA0041.120.002549291.213460.60529510ATGTTTTTTTTTCGAATGTTTGTTT+
FKH1#MA0296.110.003574031.701240.67357113ATGTTTTTTTTTCTCCTCTTTGTTTACAATTCA-
STAT1#MA0137.100.004256792.026230.67357113ATGTTTTTTTTTCCAGTTTCATTTTCC-
FOXI1#MA0042.120.004964472.363090.67357110ATGTTTTTTTTTCGGATGTTTGTTT+
id1#MA0120.1-20.006828953.250580.81072411ATGTTTTTTTTTCTTTTCCTTTTCG+
Evi1#MA0029.1-10.008720934.151160.92029912ATGTTTTTTTTTCTGTTATCTTATCTT-
br_Z1#MA0010.110.01127645.367580.99763513ATGTTTTTTTTTCGATTTGTCTATTAC-
HMG-I/Y#MA0045.100.01628737.752740.99763513ATGTTTTTTTTTCGTTTTTCCATTTGTTG-
SFP1#MA0378.170.01684238.016910.99763513ATGTTTTTTTTTCCCGTAGAAAATTTTTTTCAAT-
HCM1#MA0317.1-30.01859128.849390.9976358ATGTTTTTTTTTCTTGTTTAT-
br_Z3#MA0012.1-10.01936119.215890.99763511ATGTTTTTTTTTCCTTTTAGTTTA-
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