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MacroAPE 1083:GAYCAGG,motif573: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2.455;2.455;2447.635;2.455!2;2447.635;2.455;2.455;2.455!3;88.38;1055.65;2.455;1308.515!4;2.455;2057.29;2.455;392.8!5;1333.065;417.35;297.055...")
 
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0.0327357!10827-111C8;0.0834425!10789-110H6;0.130985!10828-111C9;0.404139!10788-110H5;0.229203!10792-110H9;0.331019!10765-110E9;0.241086!10829-111D1;0.191891!10830-111D2;0.233209!10831-111D3;0.200884!10832-111D4;0.18609!10833-111D5;0.270274!10764-110E8;0.273285!10770-110F5;0.164822!10399-106A3;0.381988!10400-106A4;0.666729!10405-106A9;0.865884!10834-111D6;0.57579!10835-111D7;0.441652!10836-111D8;0.280004!10837-111D9;0.185073!10699-109G6;0.694865!10802-111A1;0.117966!10796-110I4;0.230992!10010-101C1;0.590653!10810-111A9;0.666786!10421-106C7;0.84249!10708-109H6;0.263159!12235-129G3;0.993199!12236-129G4;0.526272!12237-129G5;0.751925!10167-103B5;0.903708!10151-102I7;0.472673!10428-106D5;0.730446!10795-110I3;0.425894!10805-111A4;0.185245!10052-101G7;0.806373!10189-103D9;0.567861!10589-108D4;0.717075!10425-106D2;0.584236!10427-106D4;0.504245!10702-109G9;0.294853!10432-106D9;0.0327396!10496-107C1;0.909214!10718-109I7;0.517642!10011-101C2;0.268636!10053-101G8;0.434997!10686-109F2;0.497191!10084-102B3;0.501956!10012-101C3;0.703152!10085-102B4;0.74168!10482-107A5;0.676716!10419-106C5;0.492055!10080-102A8;0.641947!10760-110E4;0.722844!10709-109H7;0.78096!10710-109H8;0.601117!10703-109H1;0.600889!10719-109I8;0.377891!10642-109A3;0.214426!10177-103C6;0.426982!10164-103B2;0.581266!10173-103C2;0.632702!10166-103B4;0.256545!10083-102B2;0.450821!10188-103D8;0.51526!10552-107I3;0.764953!10553-107I4;0.329127!10013-101C4;0.426975!10536-107G5;0.363134!10618-108G6;0.566975!10423-106C9;0.926877!10785-110H2;0.99246!12238-129G6;0.993647!12239-129G7;0.0537933!12240-129G8;0.0357926!10416-106C2;0.106395!10801-110I9;0.0671036!10766-110F1;0.281995!10824-111C5;0.475544!10825-111C6;0.512842!10826-111C7;0.530139!10454-106G4;0.501944!10409-106B4;0.455442!10638-108I8;0.284023!10636-108I6;0.775124!10513-107D9;0.305059!10420-106C6;0.948242!10082-102B1;0.732479!10014-101C5;0.36821!10070-101I7;0.339587!10452-106G2;0.392298!10453-106G3;0.0481347!10449-106F8;0.0794422!10042-101F6;0.0766788!10069-101I6;0.700961!10193-103E4;0.469165!10631-108I1;0.589233!10438-106E6;0.0634656!10488-107B2;0.252416!10196-103E7;0.644311!10071-101I8;0.163754!10071-101I8;0.334139!10041-101F5;0.628044!10451-106G1;0.729089!10450-106F9;0.402961!10604-108F1;0.589854!10605-108F2;0.616838!10606-108F3;0.570584!10603-108E9;0.510536!10497-107C2;0.675223!10448-106F7;0.622851!10643-109A4;0.156378!10426-106D3;0.632964!10431-106D8;0.706132!10197-103E8;0.586665!10443-106F2;0.177087!10815-111B5;0.13369!10816-111B6;0.38933!10817-111B7;0.295528!10015-101C6;0.3837!10410-106B5;0.533175!10054-101G9;0.892933!10758-110E2;0.458224!10711-109H9;0.823361!10040-101F4;0.870715!10470-106I2;0.702892!10415-106C1;0.562544!10198-103E9;0.872314!10614-108G2;0.288542!10612-108F9;0.586761!10549-107H9;0.873776!10615-108G3;0.813983!10487-107B1;0.765035!10433-106E1;0.374784!10688-109F4;0.576307!10444-106F3;0.365627!10444-106F3;0.679963!10485-107A8;0.64324!10413-106B8;0.505252!10175-103C4;0.622238!10161-103A8;0.505756!12131-128D7;0.654041!10624-108H3;0.0316001!10712-109I1;0.505366!10205-103F7;0.364114!10206-103F8;0.756476!10207-103F9;0.739401!10050-101G5;0.90057!10051-101G6;0.797502!10016-101C7;0.913412!10046-101G1;0.999204!10778-110G4;0.995613!10633-108I3;0.0694867!10818-111B8;0.910039!10819-111B9;0.947096!10820-111C1;0.986804!10484-107A7;0.981125!10808-111A7;0.905162!10169-103B7;0.165489!10153-102I9;0.681137!13425-144D5;0.809502!13433-144E4;0.799988!13437-144E8;0.897975!11904-125F5;0.784337!11905-125F6;0.281363!10039-101F3;0.312453!10791-110H8;0.717778!10017-101C8;0.420583!10045-101F9;0.153793!10509-107D5;0.187603!10839-111E2;0.879847!10692-109F8;0.484998!10079-102A7;0.929826!10078-102A6;0.722291!10721-110A1;0.877649!10569-108B2;0.650654!10570-108B3;0.398766!10571-108B4;0.155821!10647-109A8;0.270766!10752-110D5;0.975493!10782-110G8;0.55049!10726-110A6;0.0312905!10018-101C9;0.740487!10086-102B5;0.633125!10182-103D2;0.881516!10165-103B3;0.663249!10499-107C4;0.773194!10408-106B3;0.590661!10019-101D1;0.75245!10068-101I5;0.520903!10075-102A3;0.704667!10077-102A5;0.398796!10727-110A7;0.999967!10775-110G1;0.133831!10412-106B7;0.108647!12231-129F8;0.66253!12232-129F9;0.528171!12233-129G1;0.711712!12234-129G2;0.775286!10414-106B9;0.416402!10170-103B8;0.880295!10183-103D3;0.457547!10150-102I6;0.6186!10174-103C3;0.693908!10155-103A2;0.706634!10038-101F2;0.889246!10838-111E1;0.923768!10759-110E3;0.645929!10514-107E1;0.178067!10465-106H6;0.83165!10691-109F7;0.841158!10843-111E6;0.0706229!10844-111E7;0.26614!11747-123G1;0.479877!11748-123G2;0.0419582!11749-123G3;0.00184366!11750-123G4;0.0271383!11751-123G5;0.238043!11840-124H4;0.0552875!11752-123G6;0.163417!11753-123G7;0.0600276!11754-123G8;0.0726859!11755-123G9;0.149968!11756-123H1;0.0996375!11833-124G6;0.0277253!11760-123H5;0.000994382!11836-124G9;0.0112232!11758-123H3;0.0623509!11835-124G8;0.00570294!11762-123H7;0.0148714!11838-124H2;0.00117329!11757-123H2;0.00539596!11759-123H4;0.0023754!11761-123H6;0.00614491!11842-124H6;0.000290845!11837-124H1;0.0203383!10568-108B1;0.0297953!13230-141I8;0.244998!13231-141I9;0.155259!10696-109G3;0.0833224!10493-107B7;0.25396!10494-107B8;0.967039!10850-111F4;0.332573!10851-111F5;0.642177!10852-111F6;0.199085!10853-111F7;0.0622983!10854-111F8;0.180594!10855-111F9;0.239257!10856-111G1;0.552825!10847-111F1;0.31958!10846-111E9;0.691292!10848-111F2;0.567798!10845-111E8;0.366298!10857-111G2;0.880548!10858-111G3;0.998508!10156-103A3;0.145955!11901-125F2;0.63949!11902-125F3;0.452558!11903-125F4;0.324267!10689-109F5;0.503584!10648-109A9;0.478969!10784-110H1;0.509638!10744-110C6;0.458211!10772-110F7;0.206233!10474-106I6;0.353828!10600-108E6;0.222193!10684-109E9;0.691236!12226-129F3;0.209888!12227-129F4;0.62152!10508-107D4;0.962268!10539-107G8;0.14576!10607-108F4;0.599704!10555-107I6;0.320336!10774-110F9;0.363966!10637-108I7;0.248824!10663-109C6;0.113224!10728-110A8;0.253958!10729-110A9;0.228646!10430-106D7;0.176193!10730-110B1;0.0679832!10813-111B3;0.203854!10812-111B2;0.615048!10037-101F1;0.0948117!10172-103C1;0.698063!10163-103B1;0.510526!10076-102A4;0.680227!10073-102A1;0.639156!10036-101E9;0.608451!10195-103E6;0.71672!10277-104E7;0.670662!10434-106E2;0.512998!10550-107I1;0.75281!10545-107H5;0.451712!10544-107H4;0.947446!10704-109H2;0.728435!10510-107D6;0.830405!10558-107I9;0.251475!10020-101D2;0.65958!10732-110B3;0.615455!10049-101G4;0.596611!10698-109G5;0.667609!10437-106E5;0.879582!10417-106C3;0.940446!10035-101E8;0.914922!10171-103B9;0.713716!10157-103A4;0.47316!10034-101E7;0.650656!10072-101I9;0.699255!10199-103F1;0.609027!10200-103F2;0.810632!10697-109G4;0.29922!10723-110A3;0.124511!10179-103C8;0.912243!10160-103A7;0.872619!10180-103C9;0.847835!10162-103A9;0.771368!10021-101D3;0.772864!10840-111E3;0.253548!10706-109H4;0.140015!10033-101E6;0.974681!10032-101E5;0.805814!10490-107B4;0.731299!10439-106E7;0.794629!10022-101D4;0.666545!10176-103C5;0.385744!10469-106I1;0.526138!10067-101I4;0.606184!10411-106B6;0.396802!10471-106I3;0.971752!10030-101E3;0.420825!10475-106I7;0.671453!10787-110H4;0.281042!10477-106I9;0.888675!10695-109G2;0.631838!11771-123I7;0.0897351!11772-123I8;0.926923!11773-123I9;0.836083!10093-102C3;0.756418!10442-106F1;0.838514!10442-106F1;0.125102!10201-103F3;0.159963!10639-108I9;0.219393!11843-124H7;0.643628!11841-124H5;0.815937!10693-109F9;0.493066!10436-106E4;0.511685!10483-107A6;0.836945!10282-104F3;0.895512!10023-101D5;0.798462!10066-101I3;0.701438!10065-101I2;0.45813!10800-110I8;0.486346!10610-108F7;0.498049!10841-111E4;0.552369!10541-107H1;0.642441!10842-111E5;0.863013!10562-108A4;0.321229!10024-101D6;0.284457!10064-101I1;0.452082!10609-108F6;0.307036!10048-101G3;0.792579!10781-110G7;0.347603!10181-103D1;0.427008!10159-103A6;0.695844!10056-101H2;0.688888!10737-110B8;0.640672!10025-101D7;0.208825!10044-101F8;0.979136!10424-106D1;0.795714!10463-106H4;0.205629!10616-108G4;0.530342!10486-107A9;0.812271!10062-101H8;0.326999!10202-103F4;0.276968!10158-103A5;0.847096!10441-106E9;0.677506!10031-101E4;0.618665!10063-101H9;0.729287!10063-101H9;0.61246!11763-123H8;0.353364!11765-123I1;0.227104!11768-123I4;0.105014!10807-111A6;0.171459!10790-110H7;0.836918!10798-110I6;0.433713!10786-110H3;0.972782!10591-108D6;0.768546!10593-108D8;0.186765!10590-108D5;0.690748!10026-101D8;0.485463!10096-102C6;0.94544!10168-103B6;0.216899!10154-103A1;0.635267!10209-103G2;0.612802!10061-101H7;0.528247!10027-101D9;0.418624!10043-101F7;0.0715565!10783-110G9;0.426837!10028-101E1;0.491931!10060-101H6;0.44065!10203-103F5;0.53361!10059-101H5;0.500964!10047-101G2;0.593104!10029-101E2;0.9226!10058-101H4;0.625826!10418-106C4;0.449075!10492-107B6;0.554096!10694-109G1;0.629647!10797-110I5;0.0883472!10057-101H3;0.411405!10100-102D1;0.344427!10055-101H1;0.328025!10204-103F6;0.225528!10191-103E2;0.408785!10563-108A5;0.742547
|name=GAYCAGG,motif573,CNhs11768,T:2455.0(62.37%),B:39517.9(53.17%),P:1e-30
|name=GAYCAGG,motif573,CNhs11768,T:2455.0(62.37%),B:39517.9(53.17%),P:1e-30
|tomtom_result=ASH1#MA0276.1;3;0.00144342;0.687069;0.805489;7;GATCAGG;CCGGATCGGG;+!ARR10#MA0121.1;1;0.00613351;2.91955;1;7;GATCAGG;AGATCCGC;+!ECM23#MA0293.1;3;0.011872;5.65106;1;7;GATCAGG;AAAGATCTAAA;+!TBS1#MA0404.1;2;0.0128587;6.12076;1;6;GATCAGG;CGGATCCG;+!GAT3#MA0301.1;1;0.0177381;8.44334;1;7;GATCAGG;AGATCTACA;+!ESR1#MA0112.2;11;0.0183753;8.74663;1;7;GATCAGG;GGGGTCACGGTGACCTGG;-!ESR1#MA0112.2;10;0.0187145;8.90812;1;7;GATCAGG;AGGTCAGGGTGACCTGGGCC;-!GAT4#MA0302.1;3;0.0205247;9.76977;1;7;GATCAGG;AAAGATCTAAA;+
}}
}}

Latest revision as of 14:20, 7 September 2012

Full Name: GAYCAGG,motif573,CNhs11768,T:2455.0(62.37%),B:39517.9(53.17%),P:1e-30

Motif matrix
POACGT
12.4552.4552447.6352.455
22447.6352.4552.4552.455
388.381055.652.4551308.515
42.4552057.292.455392.8
51333.065417.35297.055407.53
6488.54588.381868.2559.82
7346.155699.6751406.7152.455

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ASH1#MA0276.130.001443420.6870690.8054897GATCAGGCCGGATCGGG+
ARR10#MA0121.110.006133512.9195517GATCAGGAGATCCGC+
ECM23#MA0293.130.0118725.6510617GATCAGGAAAGATCTAAA+
TBS1#MA0404.120.01285876.1207616GATCAGGCGGATCCG+
GAT3#MA0301.110.01773818.4433417GATCAGGAGATCTACA+
ESR1#MA0112.2110.01837538.7466317GATCAGGGGGGTCACGGTGACCTGG-
ESR1#MA0112.2100.01871458.9081217GATCAGGAGGTCAGGGTGACCTGGGCC-
GAT4#MA0302.130.02052479.7697717GATCAGGAAAGATCTAAA+
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