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MacroAPE 1083:RARG do: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;4.956896551724147;2.4784482758620734;12.392241379310343;4.2025862068965605!2;5.064655172413792;3.663793103448264;11.314655172413797;3.987068...")
 
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4041!10455-106G5;0.49965!10534-107G3;0.117387!10429-106D6;0.665533!10464-106H5;0.108678!10827-111C8;0.593983!10789-110H6;0.343165!10828-111C9;0.0677896!10788-110H5;0.866568!10792-110H9;0.775095!10765-110E9;0.649993!10829-111D1;0.892657!10830-111D2;0.385786!10831-111D3;0.332701!10832-111D4;0.255144!10833-111D5;0.872558!10764-110E8;0.85861!10770-110F5;0.149682!10399-106A3;0.577927!10400-106A4;0.34205!10405-106A9;0.283773!10834-111D6;0.181232!10835-111D7;0.938796!10836-111D8;0.934689!10837-111D9;0.818175!10699-109G6;0.666006!10802-111A1;0.138184!10796-110I4;0.403973!10010-101C1;0.0899602!10810-111A9;0.630818!10421-106C7;0.186533!10708-109H6;0.374443!12235-129G3;0.291462!12236-129G4;0.873766!12237-129G5;0.17509!10167-103B5;0.475031!10151-102I7;0.0608482!10428-106D5;0.0115845!10795-110I3;0.078146!10805-111A4;0.665648!10052-101G7;0.0284372!10189-103D9;0.494023!10589-108D4;0.421363!10425-106D2;0.995066!10427-106D4;4.1426e-06!10702-109G9;0.244552!10432-106D9;0.26425!10496-107C1;0.173309!10718-109I7;0.0380505!10011-101C2;0.873113!10053-101G8;0.758637!10686-109F2;0.301327!10084-102B3;0.240946!10012-101C3;0.23782!10085-102B4;0.0681612!10482-107A5;0.0315423!10419-106C5;0.230415!10080-102A8;0.370214!10760-110E4;0.771874!10709-109H7;0.954058!10710-109H8;0.419706!10703-109H1;0.168239!10719-109I8;0.0387755!10642-109A3;0.00456651!10177-103C6;0.000235832!10164-103B2;0.189283!10173-103C2;0.0241944!10166-103B4;0.0378756!10083-102B2;0.00529259!10188-103D8;0.0369852!10552-107I3;0.0374801!10553-107I4;0.637532!10013-101C4;0.748546!10536-107G5;0.768207!10618-108G6;0.07228!10423-106C9;0.889228!10785-110H2;0.993225!12238-129G6;0.213777!12239-129G7;0.124117!12240-129G8;0.909643!10416-106C2;0.0474515!10801-110I9;0.698749!10766-110F1;0.725148!10824-111C5;0.833834!10825-111C6;0.57761!10826-111C7;0.660167!10454-106G4;0.615081!10409-106B4;0.582362!10638-108I8;0.580521!10636-108I6;0.198039!10513-107D9;0.282639!10420-106C6;0.122939!10082-102B1;0.12705!10014-101C5;0.646378!10070-101I7;0.468627!10452-106G2;0.770023!10453-106G3;0.656932!10449-106F8;0.625254!10042-101F6;0.698215!10069-101I6;0.317916!10193-103E4;0.154883!10631-108I1;0.151156!10438-106E6;0.783495!10488-107B2;0.63644!10196-103E7;0.504913!10071-101I8;0.638358!10071-101I8;0.732584!10041-101F5;0.00910465!10451-106G1;0.260632!10450-106F9;0.902084!10604-108F1;0.290465!10605-108F2;0.562971!10606-108F3;0.0098368!10603-108E9;0.360596!10497-107C2;0.51727!10448-106F7;0.00617628!10643-109A4;0.224052!10426-106D3;0.00514358!10431-106D8;0.663623!10197-103E8;0.677781!10443-106F2;0.128371!10815-111B5;0.106383!10816-111B6;0.97082!10817-111B7;0.821594!10015-101C6;0.901637!10410-106B5;0.211742!10054-101G9;0.0726952!10758-110E2;0.775214!10711-109H9;0.044677!10040-101F4;0.879931!10470-106I2;0.0309279!10415-106C1;0.373823!10198-103E9;0.0306572!10614-108G2;0.530796!10612-108F9;0.681573!10549-107H9;0.395853!10615-108G3;0.0210976!10487-107B1;0.138739!10433-106E1;0.211933!10688-109F4;0.920441!10444-106F3;0.952637!10444-106F3;0.00680535!10485-107A8;0.00721017!10413-106B8;0.00015082!10175-103C4;0.0516072!10161-103A8;0.227649!12131-128D7;0.068021!10624-108H3;0.0214403!10712-109I1;0.153001!10205-103F7;0.206396!10206-103F8;0.693902!10207-103F9;0.615762!10050-101G5;0.942062!10051-101G6;0.0169431!10016-101C7;0.0182906!10046-101G1;0.150802!10778-110G4;0.745454!10633-108I3;0.16696!10818-111B8;0.698666!10819-111B9;0.1473!10820-111C1;0.127605!10484-107A7;0.162161!10808-111A7;0.65586!10169-103B7;0.530587!10153-102I9;0.0780841!13425-144D5;0.0322901!13433-144E4;0.496111!13437-144E8;0.365171!11904-125F5;0.963904!11905-125F6;0.256552!10039-101F3;0.356547!10791-110H8;0.0472893!10017-101C8;0.987938!10045-101F9;0.0639336!10509-107D5;0.878953!10839-111E2;0.659117!10692-109F8;0.345657!10079-102A7;0.651173!10078-102A6;0.347898!10721-110A1;0.0110484!10569-108B2;0.46865!10570-108B3;0.366612!10571-108B4;0.0988925!10647-109A8;0.61598!10752-110D5;0.00417267!10782-110G8;0.765976!10726-110A6;0.389926!10018-101C9;0.0109014!10086-102B5;0.00480859!10182-103D2;0.141871!10165-103B3;0.0962261!10499-107C4;0.0758247!10408-106B3;0.385628!10019-101D1;0.945087!10068-101I5;0.994754!10075-102A3;0.281566!10077-102A5;0.816779!10727-110A7;0.120661!10775-110G1;0.606449!10412-106B7;0.651056!12231-129F8;0.68144!12232-129F9;0.00236442!12233-129G1;0.0237809!12234-129G2;0.0735133!10414-106B9;0.021348!10170-103B8;0.493477!10183-103D3;0.0402064!10150-102I6;0.0607364!10174-103C3;0.0238403!10155-103A2;0.453843!10038-101F2;0.138612!10838-111E1;0.22596!10759-110E3;0.00163493!10514-107E1;0.00853267!10465-106H6;0.191109!10691-109F7;0.678779!10843-111E6;0.194596!10844-111E7;0.12405!11747-123G1;0.0650808!11748-123G2;0.96305!11749-123G3;0.992026!11750-123G4;0.101596!11751-123G5;0.478475!11840-124H4;0.945374!11752-123G6;0.771941!11753-123G7;0.148867!11754-123G8;0.59693!11755-123G9;0.751206!11756-123H1;0.824124!11833-124G6;0.255204!11760-123H5;0.116798!11836-124G9;0.462833!11758-123H3;0.412278!11835-124G8;0.959606!11762-123H7;0.55536!11838-124H2;0.513026!11757-123H2;0.370794!11759-123H4;0.944868!11761-123H6;0.269302!11842-124H6;0.728918!11837-124H1;0.212807!10568-108B1;0.751703!13230-141I8;0.890975!13231-141I9;0.668833!10696-109G3;0.455641!10493-107B7;0.0473553!10494-107B8;0.151182!10850-111F4;0.473515!10851-111F5;0.352476!10852-111F6;0.762977!10853-111F7;0.608345!10854-111F8;0.304663!10855-111F9;3.06126e-05!10856-111G1;0.852457!10847-111F1;0.428298!10846-111E9;0.93449!10848-111F2;0.280928!10845-111E8;0.402928!10857-111G2;0.588703!10858-111G3;0.769408!10156-103A3;0.305115!11901-125F2;0.0281002!11902-125F3;0.298551!11903-125F4;0.393385!10689-109F5;0.0350452!10648-109A9;0.467343!10784-110H1;0.11052!10744-110C6;0.657639!10772-110F7;0.127563!10474-106I6;0.35893!10600-108E6;0.0050032!10684-109E9;0.0267363!12226-129F3;0.0488403!12227-129F4;0.00677715!10508-107D4;0.421589!10539-107G8;0.00544223!10607-108F4;0.00143623!10555-107I6;0.109159!10774-110F9;0.0116128!10637-108I7;0.121338!10663-109C6;0.00101361!10728-110A8;0.000433683!10729-110A9;4.77445e-06!10430-106D7;0.17097!10730-110B1;0.397087!10813-111B3;0.212153!10812-111B2;0.319921!10037-101F1;0.890447!10172-103C1;0.0542518!10163-103B1;0.0433681!10076-102A4;0.0303899!10073-102A1;0.0838486!10036-101E9;0.00453965!10195-103E6;0.0682131!10277-104E7;0.0482014!10434-106E2;0.1866!10550-107I1;0.574754!10545-107H5;0.989317!10544-107H4;0.6151!10704-109H2;0.41873!10510-107D6;0.27511!10558-107I9;0.000249335!10020-101D2;0.00160268!10732-110B3;0.717183!10049-101G4;0.879983!10698-109G5;0.0555023!10437-106E5;0.955834!10417-106C3;0.409294!10035-101E8;0.114767!10171-103B9;0.0378399!10157-103A4;0.0702473!10034-101E7;0.0269627!10072-101I9;0.0630021!10199-103F1;0.00453397!10200-103F2;0.129779!10697-109G4;0.207714!10723-110A3;0.801975!10179-103C8;0.377536!10160-103A7;0.0852996!10180-103C9;0.0475159!10162-103A9;0.437139!10021-101D3;0.0734151!10840-111E3;0.38789!10706-109H4;0.094032!10033-101E6;0.00407789!10032-101E5;0.119989!10490-107B4;0.079075!10439-106E7;0.269168!10022-101D4;0.271491!10176-103C5;0.838886!10469-106I1;0.0190878!10067-101I4;0.292592!10411-106B6;0.0715035!10471-106I3;0.0652296!10030-101E3;0.292764!10475-106I7;0.411273!10787-110H4;0.0136657!10477-106I9;0.83856!10695-109G2;0.0120774!11771-123I7;0.0360301!11772-123I8;0.478947!11773-123I9;0.0953034!10093-102C3;0.03222!10442-106F1;0.0210882!10442-106F1;0.958263!10201-103F3;0.84957!10639-108I9;0.396133!11843-124H7;0.0634092!11841-124H5;0.949266!10693-109F9;0.772863!10436-106E4;0.206431!10483-107A6;0.132885!10282-104F3;0.000642433!10023-101D5;0.00220509!10066-101I3;0.000471528!10065-101I2;0.180489!10800-110I8;0.249618!10610-108F7;0.134988!10841-111E4;0.0385651!10541-107H1;0.0334745!10842-111E5;0.180946!10562-108A4;0.0102083!10024-101D6;0.264239!10064-101I1;0.0903582!10609-108F6;0.644892!10048-101G3;0.911548!10781-110G7;0.232318!10181-103D1;0.158219!10159-103A6;0.254522!10056-101H2;0.141925!10737-110B8;0.203073!10025-101D7;0.196464!10044-101F8;0.52604!10424-106D1;0.893125!10463-106H4;0.467539!10616-108G4;0.842445!10486-107A9;0.0330737!10062-101H8;0.518049!10202-103F4;0.995565!10158-103A5;0.133014!10441-106E9;0.190499!10031-101E4;0.000924703!10063-101H9;0.103084!10063-101H9;0.00766125!11763-123H8;0.758402!11765-123I1;0.92627!11768-123I4;0.863474!10807-111A6;0.650138!10790-110H7;0.109422!10798-110I6;0.185455!10786-110H3;0.24839!10591-108D6;0.447482!10593-108D8;0.983942!10590-108D5;0.161145!10026-101D8;0.769866!10096-102C6;0.317294!10168-103B6;0.963177!10154-103A1;0.22892!10209-103G2;0.0854957!10061-101H7;0.0350382!10027-101D9;0.609078!10043-101F7;0.84925!10783-110G9;0.987811!10028-101E1;0.0675352!10060-101H6;0.109148!10203-103F5;0.353941!10059-101H5;0.00684111!10047-101G2;0.0202531!10029-101E2;0.0238843!10058-101H4;0.197126!10418-106C4;0.341234!10492-107B6;0.939456!10694-109G1;0.730313!10797-110I5;0.00199165!10057-101H3;0.323963!10100-102D1;0.357883!10055-101H1;0.701915!10204-103F6;0.48136!10191-103E2;0.0934044!10563-108A5;0.103076
|name=RARG_do
|name=RARG_do
|tomtom_result=RXR::RAR_DR5#MA0159.1;-2;2.34099e-13;1.11431e-10;2.21395e-10;17;GGGGGTCACCCAGAGGTCAC;AGGTCATGGAGAGGTCA;+!NR4A2#MA0160.1;-12;7.00621e-06;0.00333496;0.00331299;8;GGGGGTCACCCAGAGGTCAC;AAGGTCAC;+!Esrrb#MA0141.1;-7;1.1407e-05;0.00542974;0.00359598;12;GGGGGTCACCCAGAGGTCAC;AGCTCAAGGTCA;+!PPARG::RXRA#MA0065.2;-4;1.6141e-05;0.00768312;0.00381625;15;GGGGGTCACCCAGAGGTCAC;GTAGGGCAAAGGTCA;+!HNF4A#MA0114.1;-6;9.03842e-05;0.0430229;0.0170958;13;GGGGGTCACCCAGAGGTCAC;AGGCCAAAGGTCA;+!Tal1::Gata1#MA0140.1;-2;0.000386892;0.18416;0.0584439;18;GGGGGTCACCCAGAGGTCAC;CTGGTGGGGACAGATAAG;+!RORA_1#MA0071.1;-9;0.000432584;0.20591;0.0584439;10;GGGGGTCACCCAGAGGTCAC;ATCAAGGTCA;+!NR2F1#MA0017.1;-5;0.000682087;0.324674;0.0806337;14;GGGGGTCACCCAGAGGTCAC;AGGTTCAAAGGTCA;-!Pax4#MA0068.1;4;0.00109797;0.522633;0.115376;20;GGGGGTCACCCAGAGGTCAC;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!ESR1#MA0112.2;-8;0.00175581;0.835767;0.166052;12;GGGGGTCACCCAGAGGTCAC;GGCCCAGGTCACCCTGACCT;+!SMP1#MA0383.1;2;0.00373443;1.77759;0.321069;19;GGGGGTCACCCAGAGGTCAC;TGCTAATTTAATTATAGGTAA;-!PPARG::RXRA#MA0065.2;-9;0.00610433;2.90566;0.43704;11;GGGGGTCACCCAGAGGTCAC;CTAGGGGTCAAAGGTCATCG;+!RORA_2#MA0072.1;-6;0.00619076;2.9468;0.43704;14;GGGGGTCACCCAGAGGTCAC;TATAAGTAGGTCAA;+!opa#MA0456.1;-6;0.00646968;3.07957;0.43704;12;GGGGGTCACCCAGAGGTCAC;CAGCGGGGGGTC;-!BAS1#MA0278.1;-3;0.00983719;4.6825;0.59409;17;GGGGGTCACCCAGAGGTCAC;GCACAGCCAGAGTCAAGTCAA;+!Pax5#MA0014.1;-2;0.0107021;5.0942;0.59409;18;GGGGGTCACCCAGAGGTCAC;GGAGCACTGAAGCGTAACCG;+!CTCF#MA0139.1;0;0.0115772;5.51077;0.59409;19;GGGGGTCACCCAGAGGTCAC;TAGCGCCCCCTGGTGGCCA;-!Hltf#MA0109.1;-8;0.0118291;5.63064;0.59409;10;GGGGGTCACCCAGAGGTCAC;ATATAAGGTT;-!NR1H2::RXRA#MA0115.1;-11;0.0124447;5.92369;0.59409;9;GGGGGTCACCCAGAGGTCAC;AAAGGTCAAAGGTCAAC;+!ESR2#MA0258.1;-1;0.0131647;6.26638;0.59409;18;GGGGGTCACCCAGAGGTCAC;CAGGTCACCGTGACCTTG;-!tll#MA0459.1;-11;0.0131918;6.27931;0.59409;9;GGGGGTCACCCAGAGGTCAC;AAAAGTCAAA;+!bZIP910#MA0096.1;-13;0.0140781;6.70117;0.605185;7;GGGGGTCACCCAGAGGTCAC;ACGTCAT;-!ARO80#MA0273.1;1;0.0149259;7.10472;0.610887;20;GGGGGTCACCCAGAGGTCAC;ACATACTTGCCGAGAATTATC;-!usp#MA0016.1;-12;0.0155026;7.37925;0.610887;8;GGGGGTCACCCAGAGGTCAC;GGGGTCACGG;+
}}
}}

Latest revision as of 14:21, 7 September 2012

Full Name: RARG_do

Motif matrix
POACGT
14.9568965517241472.478448275862073412.3922413793103434.2025862068965605
25.0646551724137923.66379310344826411.3146551724137973.9870689655172464
37.8663793103448240.969827586206895611.3146551724137973.8793103448275774
40.00.969827586206895618.534482758620684.525862068965519
51.07758620689655254.63362068965516410.4525862068965437.866379310344824
65.4956896551724191.93965517241379384.95689655172414711.637931034482756
72.693965517241387413.0387931034482624.7413793103448343.556034482758619
812.7155172413793033.01724137931034657.2198275862069071.0775862068965525
95.2801724137931068.0818965517241377.8663793103448242.801724137931032
104.094827586206891515.3017241379310442.69396551724138741.9396551724137938
115.6034482758620647.5431034482758667.0043103448275923.8793103448275774
1211.8534482758620713.1249999999999916.465517241379322.586206896551718
138.7284482758620555.9267241379310239.3749999999999980.0
1420.1508620689655230.03.01724137931034650.8620689655172411
150.00.024.03017241379310.0
160.00.016.918103448275867.112068965517238
174.41810344827585060.00.019.61206896551725
182.047413793103448420.3663793103448361.61637931034482760.0
1922.9525862068965551.07758620689655250.00.0
206.8157327586206978.21659482758627.7855603448275971.2122844827586194

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RXR::RAR_DR5#MA0159.1-22.34099e-131.11431e-102.21395e-1017GGGGGTCACCCAGAGGTCACAGGTCATGGAGAGGTCA+
NR4A2#MA0160.1-127.00621e-060.003334960.003312998GGGGGTCACCCAGAGGTCACAAGGTCAC+
Esrrb#MA0141.1-71.1407e-050.005429740.0035959812GGGGGTCACCCAGAGGTCACAGCTCAAGGTCA+
PPARG::RXRA#MA0065.2-41.6141e-050.007683120.0038162515GGGGGTCACCCAGAGGTCACGTAGGGCAAAGGTCA+
HNF4A#MA0114.1-69.03842e-050.04302290.017095813GGGGGTCACCCAGAGGTCACAGGCCAAAGGTCA+
Tal1::Gata1#MA0140.1-20.0003868920.184160.058443918GGGGGTCACCCAGAGGTCACCTGGTGGGGACAGATAAG+
RORA_1#MA0071.1-90.0004325840.205910.058443910GGGGGTCACCCAGAGGTCACATCAAGGTCA+
NR2F1#MA0017.1-50.0006820870.3246740.080633714GGGGGTCACCCAGAGGTCACAGGTTCAAAGGTCA-
Pax4#MA0068.140.001097970.5226330.11537620GGGGGTCACCCAGAGGTCACGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
ESR1#MA0112.2-80.001755810.8357670.16605212GGGGGTCACCCAGAGGTCACGGCCCAGGTCACCCTGACCT+
SMP1#MA0383.120.003734431.777590.32106919GGGGGTCACCCAGAGGTCACTGCTAATTTAATTATAGGTAA-
PPARG::RXRA#MA0065.2-90.006104332.905660.4370411GGGGGTCACCCAGAGGTCACCTAGGGGTCAAAGGTCATCG+
RORA_2#MA0072.1-60.006190762.94680.4370414GGGGGTCACCCAGAGGTCACTATAAGTAGGTCAA+
opa#MA0456.1-60.006469683.079570.4370412GGGGGTCACCCAGAGGTCACCAGCGGGGGGTC-
BAS1#MA0278.1-30.009837194.68250.5940917GGGGGTCACCCAGAGGTCACGCACAGCCAGAGTCAAGTCAA+
Pax5#MA0014.1-20.01070215.09420.5940918GGGGGTCACCCAGAGGTCACGGAGCACTGAAGCGTAACCG+
CTCF#MA0139.100.01157725.510770.5940919GGGGGTCACCCAGAGGTCACTAGCGCCCCCTGGTGGCCA-
Hltf#MA0109.1-80.01182915.630640.5940910GGGGGTCACCCAGAGGTCACATATAAGGTT-
NR1H2::RXRA#MA0115.1-110.01244475.923690.594099GGGGGTCACCCAGAGGTCACAAAGGTCAAAGGTCAAC+
ESR2#MA0258.1-10.01316476.266380.5940918GGGGGTCACCCAGAGGTCACCAGGTCACCGTGACCTTG-
tll#MA0459.1-110.01319186.279310.594099GGGGGTCACCCAGAGGTCACAAAAGTCAAA+
bZIP910#MA0096.1-130.01407816.701170.6051857GGGGGTCACCCAGAGGTCACACGTCAT-
ARO80#MA0273.110.01492597.104720.61088720GGGGGTCACCCAGAGGTCACACATACTTGCCGAGAATTATC-
usp#MA0016.1-120.01550267.379250.6108878GGGGGTCACCCAGAGGTCACGGGGTCACGG+
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