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MacroAPE 1083:CNhs13498 bu f1: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;57.41509319083663;786.9115607875731;37.31678262761805;143.07928466498794!2;158.6703628347717;229.54909312528144;77.8080313574972;558.6952339...")
 
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9.26146e-05!12183-129A5;0.00360683!12184-129A6;0.00112974!10809-111A8;0.00137206!10597-108E3;3.04616e-07!10717-109I6;0.0564915!10455-106G5;0.0198096!10534-107G3;0.226952!10429-106D6;0.105895!10464-106H5;0.179698!10827-111C8;0.165967!10789-110H6;0.975981!10828-111C9;0.661659!10788-110H5;0.693568!10792-110H9;0.667395!10765-110E9;0.820219!10829-111D1;0.85478!10830-111D2;0.351171!10831-111D3;0.189524!10832-111D4;0.79641!10833-111D5;0.783984!10764-110E8;0.530735!10770-110F5;0.677482!10399-106A3;0.8593!10400-106A4;0.13886!10405-106A9;0.162832!10834-111D6;0.204094!10835-111D7;0.759348!10836-111D8;0.0326314!10837-111D9;0.324273!10699-109G6;0.657086!10802-111A1;0.588725!10796-110I4;0.316071!10010-101C1;0.00333468!10810-111A9;0.0183624!10421-106C7;0.000340829!10708-109H6;0.518435!12235-129G3;0.00066355!12236-129G4;0.960592!12237-129G5;0.454514!10167-103B5;0.794707!10151-102I7;0.430295!10428-106D5;0.228291!10795-110I3;0.118274!10805-111A4;0.483332!10052-101G7;7.27056e-08!10189-103D9;0.0206596!10589-108D4;0.000537126!10425-106D2;0.0194245!10427-106D4;0.0194494!10702-109G9;0.503193!10432-106D9;0.230619!10496-107C1;0.000913699!10718-109I7;0.00621464!10011-101C2;0.489015!10053-101G8;0.0107164!10686-109F2;0.00383299!10084-102B3;0.404313!10012-101C3;0.210092!10085-102B4;0.231595!10482-107A5;0.618171!10419-106C5;0.0128781!10080-102A8;0.00294984!10760-110E4;0.0318189!10709-109H7;1.91816e-06!10710-109H8;1.12108e-06!10703-109H1;0.000370784!10719-109I8;0.00072059!10642-109A3;0.00189777!10177-103C6;0.0600591!10164-103B2;0.335679!10173-103C2;0.250199!10166-103B4;0.958705!10083-102B2;0.641846!10188-103D8;0.676671!10552-107I3;0.211064!10553-107I4;1.44164e-06!10013-101C4;0.00364794!10536-107G5;0.0147996!10618-108G6;0.0939296!10423-106C9;0.000246754!10785-110H2;0.000919202!12238-129G6;0.000647388!12239-129G7;0.183687!12240-129G8;0.775597!10416-106C2;0.171873!10801-110I9;0.528584!10766-110F1;0.722199!10824-111C5;0.983212!10825-111C6;0.00344198!10826-111C7;0.00273456!10454-106G4;0.00308867!10409-106B4;0.00453253!10638-108I8;0.45606!10636-108I6;9.43961e-05!10513-107D9;0.000105931!10420-106C6;0.00297822!10082-102B1;0.00241543!10014-101C5;0.106917!10070-101I7;0.0398877!10452-106G2;0.0215735!10453-106G3;0.0288512!10449-106F8;0.0322432!10042-101F6;0.0277361!10069-101I6;0.139564!10193-103E4;0.060457!10631-108I1;0.327152!10438-106E6;0.148758!10488-107B2;0.0294981!10196-103E7;0.000113923!10071-101I8;0.0506593!10071-101I8;0.0199833!10041-101F5;0.580193!10451-106G1;0.00359192!10450-106F9;5.63213e-05!10604-108F1;0.00627602!10605-108F2;0.00933331!10606-108F3;0.000546561!10603-108E9;0.00365584!10497-107C2;0.00396671!10448-106F7;0.0235348!10643-109A4;0.0112893!10426-106D3;0.000916923!10431-106D8;0.000577802!10197-103E8;0.00101167!10443-106F2;0.0121801!10815-111B5;0.00588445!10816-111B6;5.54908e-07!10817-111B7;1.2058e-06!10015-101C6;1.32571e-06!10410-106B5;0.0481494!10054-101G9;0.000878873!10758-110E2;0.141488!10711-109H9;0.0141599!10040-101F4;0.0297447!10470-106I2;0.317545!10415-106C1;0.000268908!10198-103E9;0.111566!10614-108G2;0.0219586!10612-108F9;0.00144543!10549-107H9;0.000124878!10615-108G3;2.37383e-05!10487-107B1;0.00120836!10433-106E1;7.32228e-05!10688-109F4;0.0145096!10444-106F3;0.0219647!10444-106F3;0.325692!10485-107A8;0.359351!10413-106B8;0.0288221!10175-103C4;0.0178747!10161-103A8;0.314274!12131-128D7;0.137717!10624-108H3;0.20621!10712-109I1;0.399155!10205-103F7;0.995569!10206-103F8;0.0539239!10207-103F9;0.0720718!10050-101G5;0.039367!10051-101G6;0.297147!10016-101C7;0.10678!10046-101G1;0.122184!10778-110G4;0.237179!10633-108I3;0.59621!10818-111B8;0.00418712!10819-111B9;0.00527938!10820-111C1;0.00636331!10484-107A7;0.0059833!10808-111A7;0.00236992!10169-103B7;0.312012!10153-102I9;0.424288!13425-144D5;0.175702!13433-144E4;1.76082e-09!13437-144E8;1.70862e-07!11904-125F5;2.40431e-08!11905-125F6;0.376932!10039-101F3;0.999771!10791-110H8;0.283305!10017-101C8;0.000648927!10045-101F9;0.0213155!10509-107D5;0.10016!10839-111E2;0.0135928!10692-109F8;0.0370766!10079-102A7;0.000620581!10078-102A6;0.0307006!10721-110A1;0.0835813!10569-108B2;7.3826e-05!10570-108B3;0.338574!10571-108B4;0.286252!10647-109A8;0.441563!10752-110D5;0.00600791!10782-110G8;0.304304!10726-110A6;0.751524!10018-101C9;0.209661!10086-102B5;0.0948944!10182-103D2;0.147053!10165-103B3;0.225398!10499-107C4;0.166701!10408-106B3;0.0172941!10019-101D1;0.0106695!10068-101I5;0.0183399!10075-102A3;0.0292735!10077-102A5;0.00306599!10727-110A7;4.98861e-06!10775-110G1;0.791494!10412-106B7;0.294759!12231-129F8;0.0110352!12232-129F9;0.630908!12233-129G1;0.385056!12234-129G2;0.37791!10414-106B9;0.704788!10170-103B8;0.000440323!10183-103D3;0.551547!10150-102I6;0.332926!10174-103C3;0.245756!10155-103A2;0.195438!10038-101F2;0.113724!10838-111E1;0.099562!10759-110E3;0.00750672!10514-107E1;0.0295231!10465-106H6;0.174198!10691-109F7;0.0100811!10843-111E6;0.302052!10844-111E7;0.0175891!11747-123G1;0.0124183!11748-123G2;0.455688!11749-123G3;0.904392!11750-123G4;0.835134!11751-123G5;0.913463!11840-124H4;0.491771!11752-123G6;0.431475!11753-123G7;0.932705!11754-123G8;0.3596!11755-123G9;0.937954!11756-123H1;0.490783!11833-124G6;0.870802!11760-123H5;0.96902!11836-124G9;0.4682!11758-123H3;0.282371!11835-124G8;0.975037!11762-123H7;0.601058!11838-124H2;0.764342!11757-123H2;0.328775!11759-123H4;0.735307!11761-123H6;0.729102!11842-124H6;0.644003!11837-124H1;0.49898!10568-108B1;0.405199!13230-141I8;0.0418437!13231-141I9;0.333056!10696-109G3;0.411089!10493-107B7;0.491755!10494-107B8;0.0303284!10850-111F4;0.0242063!10851-111F5;0.00358536!10852-111F6;0.00339443!10853-111F7;0.0863849!10854-111F8;0.000302518!10855-111F9;0.0202705!10856-111G1;0.188624!10847-111F1;0.518766!10846-111E9;0.0754382!10848-111F2;0.050889!10845-111E8;0.00764568!10857-111G2;0.0152995!10858-111G3;1.59671e-05!10156-103A3;0.00011025!11901-125F2;0.227021!11902-125F3;0.309051!11903-125F4;0.351651!10689-109F5;0.439596!10648-109A9;2.92893e-06!10784-110H1;0.000437694!10744-110C6;0.00993331!10772-110F7;0.770249!10474-106I6;0.410611!10600-108E6;0.600023!10684-109E9;0.00055913!12226-129F3;0.00743788!12227-129F4;0.000310626!10508-107D4;0.967241!10539-107G8;0.0540938!10607-108F4;0.0400364!10555-107I6;0.000498929!10774-110F9;0.015781!10637-108I7;0.00279114!10663-109C6;0.05533!10728-110A8;0.00706897!10729-110A9;0.007416!10430-106D7;0.806414!10730-110B1;0.0595623!10813-111B3;0.041017!10812-111B2;0.998284!10037-101F1;0.123044!10172-103C1;0.265464!10163-103B1;0.479911!10076-102A4;0.221627!10073-102A1;0.344116!10036-101E9;0.75026!10195-103E6;0.353367!10277-104E7;0.281243!10434-106E2;0.386666!10550-107I1;0.000735374!10545-107H5;3.5993e-06!10544-107H4;0.018622!10704-109H2;0.000377887!10510-107D6;0.908616!10558-107I9;0.0320471!10020-101D2;0.0136765!10732-110B3;0.0907325!10049-101G4;0.00550484!10698-109G5;0.773115!10437-106E5;0.00127095!10417-106C3;0.021333!10035-101E8;0.027219!10171-103B9;0.333099!10157-103A4;0.526413!10034-101E7;0.267545!10072-101I9;0.308871!10199-103F1;0.825301!10200-103F2;0.00665129!10697-109G4;0.0202331!10723-110A3;0.173395!10179-103C8;0.0200236!10160-103A7;0.774514!10180-103C9;0.666298!10162-103A9;0.728591!10021-101D3;0.640876!10840-111E3;0.0351021!10706-109H4;0.513419!10033-101E6;0.41489!10032-101E5;0.255053!10490-107B4;0.347745!10439-106E7;0.000422577!10022-101D4;0.000640521!10176-103C5;0.0156983!10469-106I1;0.335725!10067-101I4;0.0038924!10411-106B6;0.1187!10471-106I3;0.00495934!10030-101E3;0.0276624!10475-106I7;0.0846549!10787-110H4;0.000335431!10477-106I9;0.00121072!10695-109G2;0.0718604!11771-123I7;0.205078!11772-123I8;0.0896006!11773-123I9;0.0575079!10093-102C3;0.616042!10442-106F1;0.00728961!10442-106F1;0.0197279!10201-103F3;0.0380645!10639-108I9;0.020115!11843-124H7;0.0251412!11841-124H5;0.000577478!10693-109F9;0.000860125!10436-106E4;0.000124834!10483-107A6;0.00560038!10282-104F3;0.0247413!10023-101D5;0.624207!10066-101I3;0.242135!10065-101I2;0.209726!10800-110I8;0.0921075!10610-108F7;0.00343166!10841-111E4;0.00418082!10541-107H1;0.000926394!10842-111E5;0.00253988!10562-108A4;0.00100563!10024-101D6;0.0106345!10064-101I1;0.0301553!10609-108F6;0.0582353!10048-101G3;0.0021806!10781-110G7;0.014338!10181-103D1;0.149682!10159-103A6;0.114732!10056-101H2;0.0447172!10737-110B8;0.29774!10025-101D7;0.761261!10044-101F8;0.000100651!10424-106D1;0.00125912!10463-106H4;0.196167!10616-108G4;0.00325852!10486-107A9;0.00398807!10062-101H8;3.65759e-05!10202-103F4;0.114698!10158-103A5;0.0052934!10441-106E9;0.0535983!10031-101E4;0.000569096!10063-101H9;0.279251!10063-101H9;0.75557!11763-123H8;0.0190163!11765-123I1;0.517298!11768-123I4;0.182104!10807-111A6;0.249524!10790-110H7;8.47661e-05!10798-110I6;4.66493e-05!10786-110H3;1.46505e-08!10591-108D6;0.000110326!10593-108D8;8.54933e-05!10590-108D5;0.00737704!10026-101D8;8.59249e-05!10096-102C6;0.949364!10168-103B6;0.000877057!10154-103A1;0.334593!10209-103G2;0.133523!10061-101H7;0.0452882!10027-101D9;0.196631!10043-101F7;0.00529661!10783-110G9;0.00124373!10028-101E1;0.00377459!10060-101H6;0.194771!10203-103F5;0.180467!10059-101H5;0.0548312!10047-101G2;0.173245!10029-101E2;0.00116975!10058-101H4;0.0197504!10418-106C4;0.100426!10492-107B6;0.00506436!10694-109G1;8.79572e-05!10797-110I5;0.866219!10057-101H3;0.0056755!10100-102D1;0.0499836!10055-101H1;0.0113423!10204-103F6;0.143033!10191-103E2;0.0162296!10563-108A5;0.0012958
|name=CNhs13498_bu_f1
|name=CNhs13498_bu_f1
|tomtom_result=GABPA#MA0062.2;0;0.000686395;0.326724;0.56055;10;CTCTTCCTGCTC;CTCTTCCGGT;-!Eip74EF#MA0026.1;-2;0.00196722;0.936398;0.56055;7;CTCTTCCTGCTC;CTTCCGG;-!ELK1#MA0028.1;-2;0.00223036;1.06165;0.56055;10;CTCTTCCTGCTC;CTTCCGGCTC;-!ELF5#MA0136.1;0;0.00235834;1.12257;0.56055;9;CTCTTCCTGCTC;TACTTCCTT;+!FEV#MA0156.1;-1;0.00328359;1.56299;0.624377;8;CTCTTCCTGCTC;ATTTCCTG;-!SPI1#MA0080.2;-1;0.00403479;1.92056;0.639349;7;CTCTTCCTGCTC;ACTTCCT;-!REST#MA0138.2;3;0.00542079;2.5803;0.736263;12;CTCTTCCTGCTC;GCGCTGTCCATGGTGCTGA;+!SPI1#MA0080.2;-2;0.00723464;3.44369;0.839864;6;CTCTTCCTGCTC;CTTCCG;-!Klf4#MA0039.1;0;0.0079503;3.78434;0.839864;10;CTCTTCCTGCTC;CCTTCCTTTA;-!GABPA#MA0062.2;2;0.0101503;4.83155;0.965045;9;CTCTTCCTGCTC;GCCACTTCCGG;-!RXR::RAR_DR5#MA0159.1;4;0.0113774;5.41563;0.983372;12;CTCTTCCTGCTC;TGACCTCTCCGTGACCT;-!IXR1#MA0323.1;3;0.0125528;5.97514;0.985593;12;CTCTTCCTGCTC;CCCCGCTTCCGGCTT;-!MZF1_5-13#MA0057.1;0;0.013911;6.62164;0.985593;10;CTCTTCCTGCTC;TTCCCCCTAC;-!ETS1#MA0098.1;-2;0.0146164;6.9574;0.985593;6;CTCTTCCTGCTC;CTTCCG;+!SPIB#MA0081.1;-3;0.016822;8.00727;0.985593;7;CTCTTCCTGCTC;TTCCTCT;-!REST#MA0138.2;4;0.0172814;8.22593;0.985593;12;CTCTTCCTGCTC;GGCGCTGTCCATGGTGCTGAA;-!id1#MA0120.1;-1;0.0176229;8.38852;0.985593;11;CTCTTCCTGCTC;TTTTCCTTTTCG;+
}}
}}

Latest revision as of 14:25, 7 September 2012

Full Name: CNhs13498_bu_f1

Motif matrix
POACGT
157.41509319083663786.911560787573137.31678262761805143.07928466498794
2158.6703628347717229.5490931252814477.8080313574972558.6952339534656
32.8857383003666888529.4157951406321354.7041292890168137.71705854099994
46.105350801970209292.4431525636956618.084149860563137708.090068044786
52.9005595943943963387.5049672791238323.151426809007386611.1657675884898
64.362486491848501841.989603920809618.670251804075903159.70037905428106
713.141858223338951009.16967823749280.02.411184810183641
813.821286289101524.7718577561786333.5430309953940841002.586546230341
911.016707016770258123.31807790813365661.2593039834513229.1286323626607
10108.430553452936445.0517570040086295.2404187599763175.9999920540945
11158.7928486587999395.71054299948662371.2005736287296399.0187559839991
1263.99907476929991406.5258176882484342.15850874280613212.03932007066103

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GABPA#MA0062.200.0006863950.3267240.5605510CTCTTCCTGCTCCTCTTCCGGT-
Eip74EF#MA0026.1-20.001967220.9363980.560557CTCTTCCTGCTCCTTCCGG-
ELK1#MA0028.1-20.002230361.061650.5605510CTCTTCCTGCTCCTTCCGGCTC-
ELF5#MA0136.100.002358341.122570.560559CTCTTCCTGCTCTACTTCCTT+
FEV#MA0156.1-10.003283591.562990.6243778CTCTTCCTGCTCATTTCCTG-
SPI1#MA0080.2-10.004034791.920560.6393497CTCTTCCTGCTCACTTCCT-
REST#MA0138.230.005420792.58030.73626312CTCTTCCTGCTCGCGCTGTCCATGGTGCTGA+
SPI1#MA0080.2-20.007234643.443690.8398646CTCTTCCTGCTCCTTCCG-
Klf4#MA0039.100.00795033.784340.83986410CTCTTCCTGCTCCCTTCCTTTA-
GABPA#MA0062.220.01015034.831550.9650459CTCTTCCTGCTCGCCACTTCCGG-
RXR::RAR_DR5#MA0159.140.01137745.415630.98337212CTCTTCCTGCTCTGACCTCTCCGTGACCT-
IXR1#MA0323.130.01255285.975140.98559312CTCTTCCTGCTCCCCCGCTTCCGGCTT-
MZF1_5-13#MA0057.100.0139116.621640.98559310CTCTTCCTGCTCTTCCCCCTAC-
ETS1#MA0098.1-20.01461646.95740.9855936CTCTTCCTGCTCCTTCCG+
SPIB#MA0081.1-30.0168228.007270.9855937CTCTTCCTGCTCTTCCTCT-
REST#MA0138.240.01728148.225930.98559312CTCTTCCTGCTCGGCGCTGTCCATGGTGCTGAA-
id1#MA0120.1-10.01762298.388520.98559311CTCTTCCTGCTCTTTTCCTTTTCG+
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