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MacroAPE 1083:9-RTKACAA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;921.704;99.358;1090.824;2.114!2;2.114;2.114;2.114;2107.658!3;2.114;399.546;856.17;856.17!4;1522.08;2.114;587.692;2.114!5;2.114;1689.086;2.11...")
 
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557!10789-110H6;0.326827!10828-111C9;0.944249!10788-110H5;0.445914!10792-110H9;0.357841!10765-110E9;0.897383!10829-111D1;0.462175!10830-111D2;0.89721!10831-111D3;0.840697!10832-111D4;0.439678!10833-111D5;0.864216!10764-110E8;0.600886!10770-110F5;0.837709!10399-106A3;0.355911!10400-106A4;0.769459!10405-106A9;0.820383!10834-111D6;0.972573!10835-111D7;0.912986!10836-111D8;0.836493!10837-111D9;0.998926!10699-109G6;0.819609!10802-111A1;0.936837!10796-110I4;0.687777!10010-101C1;0.388111!10810-111A9;0.279864!10421-106C7;0.555363!10708-109H6;0.733232!12235-129G3;0.287998!12236-129G4;0.484022!12237-129G5;0.967028!10167-103B5;0.406596!10151-102I7;0.775437!10428-106D5;0.829692!10795-110I3;0.984053!10805-111A4;0.947513!10052-101G7;0.718748!10189-103D9;0.980078!10589-108D4;0.384233!10425-106D2;0.766377!10427-106D4;0.481001!10702-109G9;0.790953!10432-106D9;0.625514!10496-107C1;0.97071!10718-109I7;0.646711!10011-101C2;0.634798!10053-101G8;0.642429!10686-109F2;0.0407421!10084-102B3;0.382403!10012-101C3;0.956732!10085-102B4;0.960356!10482-107A5;0.853055!10419-106C5;0.721813!10080-102A8;0.161372!10760-110E4;0.176571!10709-109H7;0.281769!10710-109H8;0.950965!10703-109H1;0.349273!10719-109I8;0.848264!10642-109A3;0.421191!10177-103C6;0.609455!10164-103B2;0.616788!10173-103C2;0.802256!10166-103B4;0.790443!10083-102B2;0.824317!10188-103D8;0.57159!10552-107I3;0.708941!10553-107I4;0.280018!10013-101C4;0.434703!10536-107G5;0.918565!10618-108G6;0.605436!10423-106C9;0.44195!10785-110H2;0.30399!12238-129G6;0.406609!12239-129G7;0.492247!12240-129G8;0.492876!10416-106C2;0.152038!10801-110I9;0.81152!10766-110F1;0.602446!10824-111C5;0.981833!10825-111C6;0.440067!10826-111C7;0.408782!10454-106G4;0.577279!10409-106B4;0.527558!10638-108I8;0.568762!10636-108I6;0.977869!10513-107D9;0.791439!10420-106C6;0.63711!10082-102B1;0.544166!10014-101C5;0.989218!10070-101I7;0.89195!10452-106G2;0.506336!10453-106G3;0.989931!10449-106F8;0.73088!10042-101F6;0.685304!10069-101I6;0.657743!10193-103E4;0.900815!10631-108I1;0.95349!10438-106E6;0.548965!10488-107B2;0.637657!10196-103E7;0.627559!10071-101I8;0.973984!10071-101I8;0.543739!10041-101F5;0.73183!10451-106G1;0.739474!10450-106F9;0.931651!10604-108F1;0.939219!10605-108F2;0.471385!10606-108F3;0.487384!10603-108E9;0.7371!10497-107C2;0.718565!10448-106F7;0.458597!10643-109A4;0.252124!10426-106D3;0.323478!10431-106D8;0.560594!10197-103E8;0.609278!10443-106F2;0.95152!10815-111B5;0.153603!10816-111B6;0.92435!10817-111B7;0.971034!10015-101C6;0.861013!10410-106B5;0.660851!10054-101G9;0.698642!10758-110E2;0.785459!10711-109H9;0.243097!10040-101F4;0.720778!10470-106I2;0.848198!10415-106C1;0.838185!10198-103E9;0.810605!10614-108G2;0.774426!10612-108F9;0.921164!10549-107H9;0.343955!10615-108G3;0.718673!10487-107B1;0.710181!10433-106E1;0.95723!10688-109F4;0.80756!10444-106F3;0.776893!10444-106F3;0.555605!10485-107A8;0.625262!10413-106B8;0.557689!10175-103C4;0.0862416!10161-103A8;0.841999!12131-128D7;0.865069!10624-108H3;0.298755!10712-109I1;0.946882!10205-103F7;0.89882!10206-103F8;0.474729!10207-103F9;0.741705!10050-101G5;0.387116!10051-101G6;0.920886!10016-101C7;0.935775!10046-101G1;0.486232!10778-110G4;0.555912!10633-108I3;0.70502!10818-111B8;0.296168!10819-111B9;0.538735!10820-111C1;0.523711!10484-107A7;0.507079!10808-111A7;0.380509!10169-103B7;0.991245!10153-102I9;0.794549!13425-144D5;0.892202!13433-144E4;0.623122!13437-144E8;0.587615!11904-125F5;0.615235!11905-125F6;0.35769!10039-101F3;0.276328!10791-110H8;0.851625!10017-101C8;0.655146!10045-101F9;0.934079!10509-107D5;0.9317!10839-111E2;0.764149!10692-109F8;0.326594!10079-102A7;0.958121!10078-102A6;0.916074!10721-110A1;0.693788!10569-108B2;0.345797!10570-108B3;0.191628!10571-108B4;0.557439!10647-109A8;0.477898!10752-110D5;0.237764!10782-110G8;0.386589!10726-110A6;0.114721!10018-101C9;0.79749!10086-102B5;0.802856!10182-103D2;0.841841!10165-103B3;0.865914!10499-107C4;0.856516!10408-106B3;0.754392!10019-101D1;0.094044!10068-101I5;0.262079!10075-102A3;0.199216!10077-102A5;0.230583!10727-110A7;0.326779!10775-110G1;0.71921!10412-106B7;0.880772!12231-129F8;0.990116!12232-129F9;0.0147054!12233-129G1;0.0143371!12234-129G2;0.0296702!10414-106B9;0.031782!10170-103B8;0.587937!10183-103D3;0.666759!10150-102I6;0.632133!10174-103C3;0.76633!10155-103A2;0.902852!10038-101F2;0.780574!10838-111E1;0.835103!10759-110E3;0.778496!10514-107E1;0.268436!10465-106H6;0.606358!10691-109F7;0.930437!10843-111E6;0.932991!10844-111E7;0.664549!11747-123G1;0.724972!11748-123G2;0.515626!11749-123G3;0.491463!11750-123G4;0.594833!11751-123G5;0.757763!11840-124H4;0.77403!11752-123G6;0.543123!11753-123G7;0.499092!11754-123G8;0.537321!11755-123G9;0.883115!11756-123H1;0.550427!11833-124G6;0.917859!11760-123H5;0.865357!11836-124G9;0.979729!11758-123H3;0.619174!11835-124G8;0.386212!11762-123H7;0.990501!11838-124H2;0.731645!11757-123H2;0.48016!11759-123H4;0.694967!11761-123H6;0.913978!11842-124H6;0.855662!11837-124H1;0.697367!10568-108B1;0.883205!13230-141I8;0.531865!13231-141I9;0.746839!10696-109G3;0.780474!10493-107B7;0.0413575!10494-107B8;0.645943!10850-111F4;0.656083!10851-111F5;0.817677!10852-111F6;0.523595!10853-111F7;0.119154!10854-111F8;0.996551!10855-111F9;0.37343!10856-111G1;0.0695445!10847-111F1;0.187272!10846-111E9;0.786839!10848-111F2;0.165399!10845-111E8;0.530204!10857-111G2;0.461633!10858-111G3;0.961816!10156-103A3;0.62699!11901-125F2;0.776193!11902-125F3;0.689953!11903-125F4;0.889351!10689-109F5;0.791396!10648-109A9;0.917511!10784-110H1;0.789757!10744-110C6;0.790548!10772-110F7;0.775268!10474-106I6;0.627468!10600-108E6;0.960767!10684-109E9;0.121691!12226-129F3;0.286751!12227-129F4;0.638309!10508-107D4;0.48198!10539-107G8;0.932289!10607-108F4;0.80206!10555-107I6;0.277782!10774-110F9;0.877238!10637-108I7;0.23582!10663-109C6;0.403182!10728-110A8;0.546837!10729-110A9;0.996168!10430-106D7;0.866049!10730-110B1;0.727752!10813-111B3;0.979973!10812-111B2;0.795837!10037-101F1;0.687016!10172-103C1;0.827905!10163-103B1;0.66978!10076-102A4;0.921429!10073-102A1;0.754323!10036-101E9;0.623857!10195-103E6;0.996525!10277-104E7;0.903996!10434-106E2;0.735829!10550-107I1;0.449315!10545-107H5;0.736413!10544-107H4;0.89202!10704-109H2;0.738033!10510-107D6;0.200671!10558-107I9;0.0352187!10020-101D2;0.224816!10732-110B3;0.814265!10049-101G4;0.684225!10698-109G5;0.985304!10437-106E5;0.433372!10417-106C3;0.119058!10035-101E8;0.366849!10171-103B9;0.917608!10157-103A4;0.90234!10034-101E7;0.722064!10072-101I9;0.921526!10199-103F1;0.601569!10200-103F2;0.71789!10697-109G4;0.846756!10723-110A3;0.302197!10179-103C8;0.474064!10160-103A7;0.395699!10180-103C9;0.534985!10162-103A9;0.201309!10021-101D3;0.411761!10840-111E3;0.783942!10706-109H4;0.790237!10033-101E6;0.372278!10032-101E5;0.716923!10490-107B4;0.958933!10439-106E7;0.347187!10022-101D4;0.769274!10176-103C5;0.967271!10469-106I1;0.781005!10067-101I4;0.27027!10411-106B6;0.673747!10471-106I3;0.180079!10030-101E3;0.749679!10475-106I7;0.863662!10787-110H4;0.681643!10477-106I9;0.575398!10695-109G2;0.833891!11771-123I7;0.769139!11772-123I8;0.519677!11773-123I9;0.778512!10093-102C3;0.737537!10442-106F1;0.635952!10442-106F1;0.462959!10201-103F3;0.459697!10639-108I9;0.406825!11843-124H7;0.716559!11841-124H5;0.651689!10693-109F9;0.711245!10436-106E4;0.604367!10483-107A6;0.996011!10282-104F3;0.603131!10023-101D5;0.916169!10066-101I3;0.872952!10065-101I2;0.992117!10800-110I8;0.518349!10610-108F7;0.468605!10841-111E4;0.791417!10541-107H1;0.723033!10842-111E5;0.556724!10562-108A4;0.674084!10024-101D6;0.524316!10064-101I1;0.937663!10609-108F6;0.75082!10048-101G3;0.754546!10781-110G7;0.735789!10181-103D1;0.622183!10159-103A6;0.988748!10056-101H2;0.749246!10737-110B8;0.985269!10025-101D7;0.686783!10044-101F8;0.098304!10424-106D1;0.220169!10463-106H4;0.714821!10616-108G4;0.663!10486-107A9;0.216259!10062-101H8;0.818724!10202-103F4;0.807747!10158-103A5;0.978052!10441-106E9;0.451104!10031-101E4;0.630662!10063-101H9;0.978315!10063-101H9;0.549988!11763-123H8;0.748064!11765-123I1;0.899989!11768-123I4;0.948477!10807-111A6;0.985661!10790-110H7;0.553441!10798-110I6;0.664784!10786-110H3;0.374011!10591-108D6;0.879076!10593-108D8;0.37593!10590-108D5;0.435327!10026-101D8;0.350812!10096-102C6;0.187427!10168-103B6;0.185147!10154-103A1;0.979256!10209-103G2;0.917354!10061-101H7;0.714669!10027-101D9;0.749554!10043-101F7;0.249323!10783-110G9;0.0783019!10028-101E1;0.867066!10060-101H6;0.944648!10203-103F5;0.514689!10059-101H5;0.898249!10047-101G2;0.78639!10029-101E2;0.867105!10058-101H4;0.530485!10418-106C4;0.631842!10492-107B6;0.647431!10694-109G1;0.246332!10797-110I5;0.297877!10057-101H3;0.105915!10100-102D1;0.493911!10055-101H1;0.61474!10204-103F6;0.667874!10191-103E2;0.190898!10563-108A5;0.527432
|name=9-RTKACAA,CNhs13472,BestGuess:NF2L1_f1_HM09(0.747270056750428),T:2114.0(48.54%),B:17431.8(38.80%),P:1e-38
|name=9-RTKACAA,CNhs13472,BestGuess:NF2L1_f1_HM09(0.747270056750428),T:2114.0(48.54%),B:17431.8(38.80%),P:1e-38
|tomtom_result=ABF1#MA0265.1;9;0.00338809;1.61273;1;7;GTGACAA;TCGTATAAAGTGATAA;+!Pax2#MA0067.1;2;0.00506959;2.41312;1;6;GTGACAA;GCGTGACT;-!slbo#MA0244.1;0;0.00635941;3.02708;1;7;GTGACAA;ATTGCAAA;+!NFE2L2#MA0150.1;0;0.0109756;5.22439;1;7;GTGACAA;ATGACTCAGCA;+!NFIL3#MA0025.1;2;0.0126844;6.03778;1;7;GTGACAA;ATGTTACATAA;-!CEBPA#MA0102.2;0;0.0192816;9.17803;1;7;GTGACAA;ATTGCGAAA;-
}}
}}

Latest revision as of 14:38, 7 September 2012

Full Name: 9-RTKACAA,CNhs13472,BestGuess:NF2L1_f1_HM09(0.747270056750428),T:2114.0(48.54%),B:17431.8(38.80%),P:1e-38

Motif matrix
POACGT
1921.70499.3581090.8242.114
22.1142.1142.1142107.658
32.114399.546856.17856.17
41522.082.114587.6922.114
52.1141689.0862.114420.686
6980.8962.114657.454473.536
71530.53640.16654.964488.334

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ABF1#MA0265.190.003388091.6127317GTGACAATCGTATAAAGTGATAA+
Pax2#MA0067.120.005069592.4131216GTGACAAGCGTGACT-
slbo#MA0244.100.006359413.0270817GTGACAAATTGCAAA+
NFE2L2#MA0150.100.01097565.2243917GTGACAAATGACTCAGCA+
NFIL3#MA0025.120.01268446.0377817GTGACAAATGTTACATAA-
CEBPA#MA0102.200.01928169.1780317GTGACAAATTGCGAAA-
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