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MacroAPE 1083:GGACCGCCG,motif717: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;2.128;406.448;1717.296;2.128!2;210.672;2.128;1649.2;266!3;1553.44;2.128;2.128;570.304!4;780.976;1134.224;2.128;210.672!5;2.128;2121.616;2.12...")
 
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0.618664!10717-109I6;0.807824!10455-106G5;0.0122271!10534-107G3;0.0371878!10429-106D6;0.109366!10464-106H5;0.0801329!10827-111C8;0.0486477!10789-110H6;0.110428!10828-111C9;0.0231981!10788-110H5;0.0679403!10792-110H9;0.0273451!10765-110E9;0.0233035!10829-111D1;0.120528!10830-111D2;0.0356932!10831-111D3;0.024058!10832-111D4;0.090831!10833-111D5;0.0339271!10764-110E8;0.0989951!10770-110F5;0.0541368!10399-106A3;0.00499848!10400-106A4;0.0586706!10405-106A9;0.017181!10834-111D6;0.0377705!10835-111D7;0.0150499!10836-111D8;0.0527734!10837-111D9;0.145269!10699-109G6;0.00978388!10802-111A1;0.162867!10796-110I4;0.060168!10010-101C1;0.0204876!10810-111A9;0.0222459!10421-106C7;0.238932!10708-109H6;0.0221655!12235-129G3;0.21162!12236-129G4;0.621869!12237-129G5;0.377486!10167-103B5;0.497576!10151-102I7;0.453381!10428-106D5;0.26863!10795-110I3;0.835237!10805-111A4;0.0147598!10052-101G7;0.387511!10189-103D9;0.00913619!10589-108D4;0.240563!10425-106D2;0.473062!10427-106D4;0.1719!10702-109G9;0.0692895!10432-106D9;0.412817!10496-107C1;0.048926!10718-109I7;0.231133!10011-101C2;0.0320764!10053-101G8;0.115906!10686-109F2;0.626454!10084-102B3;0.711095!10012-101C3;0.0339562!10085-102B4;0.135449!10482-107A5;0.0929899!10419-106C5;0.510125!10080-102A8;0.0742558!10760-110E4;0.0163394!10709-109H7;0.627278!10710-109H8;0.494852!10703-109H1;0.623284!10719-109I8;0.925636!10642-109A3;0.927824!10177-103C6;0.980408!10164-103B2;0.363289!10173-103C2;0.492525!10166-103B4;0.644397!10083-102B2;0.488587!10188-103D8;0.163321!10552-107I3;0.119977!10553-107I4;0.0791166!10013-101C4;0.437254!10536-107G5;0.19127!10618-108G6;0.409976!10423-106C9;0.475296!10785-110H2;0.268512!12238-129G6;0.0904404!12239-129G7;0.739552!12240-129G8;0.468347!10416-106C2;0.974881!10801-110I9;0.0948929!10766-110F1;0.0421567!10824-111C5;0.0707085!10825-111C6;0.111332!10826-111C7;0.091608!10454-106G4;0.102693!10409-106B4;0.047636!10638-108I8;0.0108514!10636-108I6;0.0782008!10513-107D9;0.00860348!10420-106C6;0.178171!10082-102B1;0.518299!10014-101C5;0.110764!10070-101I7;0.316905!10452-106G2;0.156885!10453-106G3;0.134028!10449-106F8;0.153864!10042-101F6;0.119629!10069-101I6;0.018976!10193-103E4;0.0101064!10631-108I1;0.162952!10438-106E6;0.0640782!10488-107B2;0.161802!10196-103E7;0.20182!10071-101I8;0.560919!10071-101I8;0.115914!10041-101F5;0.244881!10451-106G1;0.0991859!10450-106F9;0.477994!10604-108F1;0.71759!10605-108F2;0.904653!10606-108F3;0.703578!10603-108E9;0.646206!10497-107C2;0.728261!10448-106F7;0.000144809!10643-109A4;0.0128699!10426-106D3;0.399345!10431-106D8;0.0239539!10197-103E8;0.0874405!10443-106F2;0.350171!10815-111B5;0.0901141!10816-111B6;0.0531373!10817-111B7;0.107817!10015-101C6;0.0768854!10410-106B5;0.106108!10054-101G9;0.066055!10758-110E2;0.00657919!10711-109H9;0.704643!10040-101F4;0.247889!10470-106I2;0.273131!10415-106C1;0.0889756!10198-103E9;0.04656!10614-108G2;0.160608!10612-108F9;0.450172!10549-107H9;0.0982571!10615-108G3;0.230408!10487-107B1;0.482663!10433-106E1;0.152661!10688-109F4;0.272442!10444-106F3;0.39294!10444-106F3;0.264648!10485-107A8;0.381304!10413-106B8;0.275897!10175-103C4;0.255087!10161-103A8;0.215335!12131-128D7;0.186522!10624-108H3;0.144752!10712-109I1;0.341543!10205-103F7;0.344124!10206-103F8;0.0105737!10207-103F9;0.049572!10050-101G5;0.0868378!10051-101G6;0.113913!10016-101C7;0.0749291!10046-101G1;0.0539513!10778-110G4;0.043651!10633-108I3;0.056245!10818-111B8;0.566643!10819-111B9;0.333009!10820-111C1;0.299707!10484-107A7;0.25014!10808-111A7;0.0983352!10169-103B7;0.0125245!10153-102I9;0.340792!13425-144D5;0.192459!13433-144E4;0.993272!13437-144E8;0.641545!11904-125F5;0.712757!11905-125F6;0.308332!10039-101F3;0.132444!10791-110H8;0.183013!10017-101C8;0.353684!10045-101F9;0.956343!10509-107D5;0.139685!10839-111E2;0.129849!10692-109F8;0.869193!10079-102A7;0.313282!10078-102A6;0.0247337!10721-110A1;0.0730526!10569-108B2;0.0925851!10570-108B3;0.335176!10571-108B4;0.879228!10647-109A8;0.160558!10752-110D5;0.31793!10782-110G8;0.0295697!10726-110A6;0.728371!10018-101C9;0.363797!10086-102B5;0.700423!10182-103D2;0.29262!10165-103B3;0.157062!10499-107C4;0.155096!10408-106B3;0.0976754!10019-101D1;0.224071!10068-101I5;0.270332!10075-102A3;0.307505!10077-102A5;0.129224!10727-110A7;0.266264!10775-110G1;0.0383394!10412-106B7;0.0271652!12231-129F8;0.0461923!12232-129F9;0.796099!12233-129G1;0.503075!12234-129G2;0.886202!10414-106B9;0.373717!10170-103B8;0.216237!10183-103D3;0.493567!10150-102I6;0.321057!10174-103C3;0.300146!10155-103A2;0.183367!10038-101F2;0.110596!10838-111E1;0.0399761!10759-110E3;0.841086!10514-107E1;0.72816!10465-106H6;0.344409!10691-109F7;0.378234!10843-111E6;0.75806!10844-111E7;0.813703!11747-123G1;0.880799!11748-123G2;0.326397!11749-123G3;0.564249!11750-123G4;0.352195!11751-123G5;0.039856!11840-124H4;0.205877!11752-123G6;0.16425!11753-123G7;0.566062!11754-123G8;0.0233321!11755-123G9;0.103183!11756-123H1;0.141608!11833-124G6;0.887191!11760-123H5;0.514053!11836-124G9;0.778289!11758-123H3;0.305!11835-124G8;0.454352!11762-123H7;0.197033!11838-124H2;0.602432!11757-123H2;0.245596!11759-123H4;0.913436!11761-123H6;0.508869!11842-124H6;0.571219!11837-124H1;0.818046!10568-108B1;0.0679155!13230-141I8;0.590093!13231-141I9;0.223877!10696-109G3;0.16756!10493-107B7;0.241491!10494-107B8;0.19738!10850-111F4;0.333188!10851-111F5;0.5635!10852-111F6;0.535252!10853-111F7;0.794246!10854-111F8;0.211388!10855-111F9;0.630943!10856-111G1;0.442481!10847-111F1;0.568967!10846-111E9;0.696417!10848-111F2;0.332371!10845-111E8;0.303976!10857-111G2;0.388334!10858-111G3;0.0309243!10156-103A3;0.273843!11901-125F2;0.310032!11902-125F3;0.10307!11903-125F4;0.284882!10689-109F5;0.256188!10648-109A9;0.0748032!10784-110H1;0.463854!10744-110C6;0.353132!10772-110F7;0.00160443!10474-106I6;0.055984!10600-108E6;0.0105846!10684-109E9;0.618966!12226-129F3;0.44822!12227-129F4;0.39627!10508-107D4;0.375543!10539-107G8;0.978377!10607-108F4;0.851212!10555-107I6;0.767003!10774-110F9;0.966177!10637-108I7;0.453027!10663-109C6;0.774538!10728-110A8;0.915616!10729-110A9;0.989005!10430-106D7;0.0949067!10730-110B1;0.0527839!10813-111B3;0.496364!10812-111B2;0.19244!10037-101F1;0.86514!10172-103C1;0.202987!10163-103B1;0.636576!10076-102A4;0.321474!10073-102A1;0.161694!10036-101E9;0.299026!10195-103E6;0.153422!10277-104E7;0.22529!10434-106E2;0.040542!10550-107I1;0.215389!10545-107H5;0.434931!10544-107H4;0.00649432!10704-109H2;0.147942!10510-107D6;0.648995!10558-107I9;0.564953!10020-101D2;0.8338!10732-110B3;0.116851!10049-101G4;0.902248!10698-109G5;0.149517!10437-106E5;0.15334!10417-106C3;0.337707!10035-101E8;0.0771669!10171-103B9;0.201422!10157-103A4;0.369493!10034-101E7;0.330575!10072-101I9;0.16874!10199-103F1;0.434548!10200-103F2;0.340743!10697-109G4;0.0650334!10723-110A3;0.604392!10179-103C8;0.712135!10160-103A7;0.335701!10180-103C9;0.405755!10162-103A9;0.766338!10021-101D3;0.700891!10840-111E3;0.263225!10706-109H4;0.00103107!10033-101E6;0.123282!10032-101E5;0.216485!10490-107B4;0.158189!10439-106E7;0.147975!10022-101D4;0.358783!10176-103C5;0.147774!10469-106I1;0.519585!10067-101I4;0.274013!10411-106B6;0.0579089!10471-106I3;0.174653!10030-101E3;0.11542!10475-106I7;0.00885964!10787-110H4;0.792429!10477-106I9;0.295352!10695-109G2;0.558!11771-123I7;0.218419!11772-123I8;0.906885!11773-123I9;0.859926!10093-102C3;0.665237!10442-106F1;0.221239!10442-106F1;0.113109!10201-103F3;0.11786!10639-108I9;0.282481!11843-124H7;0.176797!11841-124H5;0.0441566!10693-109F9;0.0413047!10436-106E4;0.421827!10483-107A6;0.000648597!10282-104F3;0.0273143!10023-101D5;0.147463!10066-101I3;0.0296796!10065-101I2;0.00128142!10800-110I8;0.021349!10610-108F7;0.927781!10841-111E4;0.572495!10541-107H1;0.539332!10842-111E5;0.483517!10562-108A4;0.737897!10024-101D6;0.81793!10064-101I1;0.550648!10609-108F6;0.382796!10048-101G3;0.446722!10781-110G7;0.0161597!10181-103D1;0.820442!10159-103A6;0.0310693!10056-101H2;0.199539!10737-110B8;0.00640708!10025-101D7;0.0732626!10044-101F8;0.367793!10424-106D1;0.109691!10463-106H4;0.00603915!10616-108G4;0.274972!10486-107A9;0.35308!10062-101H8;0.0532099!10202-103F4;0.134819!10158-103A5;0.184131!10441-106E9;0.0781998!10031-101E4;0.925003!10063-101H9;0.086162!10063-101H9;0.243279!11763-123H8;0.286293!11765-123I1;0.110563!11768-123I4;0.173182!10807-111A6;0.14669!10790-110H7;0.287144!10798-110I6;0.608905!10786-110H3;0.756396!10591-108D6;0.0993121!10593-108D8;0.0681767!10590-108D5;0.0852693!10026-101D8;0.128961!10096-102C6;0.461058!10168-103B6;0.702476!10154-103A1;0.238867!10209-103G2;0.215294!10061-101H7;0.0971539!10027-101D9;0.0425434!10043-101F7;0.460309!10783-110G9;0.902401!10028-101E1;0.484391!10060-101H6;0.353091!10203-103F5;0.000995663!10059-101H5;0.0477138!10047-101G2;0.0627269!10029-101E2;0.386279!10058-101H4;0.255556!10418-106C4;0.0288627!10492-107B6;0.28566!10694-109G1;0.0846457!10797-110I5;0.384319!10057-101H3;0.154821!10100-102D1;0.0732875!10055-101H1;0.235314!10204-103F6;0.0519786!10191-103E2;0.225345!10563-108A5;0.126777
|name=GGACCGCCG,motif717,CNhs11974,T:2128.0(39.17%),B:23861.1(31.93%),P:1e-28
|name=GGACCGCCG,motif717,CNhs11974,T:2128.0(39.17%),B:23861.1(31.93%),P:1e-28
|tomtom_result=IME1#MA0320.1;-3;0.0029182;1.38906;1;6;GGACCGCCG;CCGCCGAG;+!abi4#MA0123.1;1;0.00480007;2.28483;1;9;GGACCGCCG;GGGGGCACCG;-!SNT2#MA0384.1;2;0.00846585;4.02974;1;9;GGACCGCCG;TGGTAGCGCCG;+!lin-14#MA0261.1;-1;0.00888947;4.23139;1;6;GGACCGCCG;GAACAC;+!STB5#MA0392.1;-1;0.00983694;4.68238;1;8;GGACCGCCG;TAACACCG;-!STP1#MA0394.1;-3;0.00983694;4.68238;1;6;GGACCGCCG;GCGCCGCA;-!YLL054C#MA0429.1;-2;0.0100477;4.78269;1;7;GGACCGCCG;TCGGCCG;-!Macho-1#MA0118.1;0;0.0106273;5.05859;1;9;GGACCGCCG;GAACCCCCA;-!UGA3#MA0410.1;-1;0.0164756;7.84239;1;8;GGACCGCCG;TCCCGCCG;-!SUT1#MA0399.1;-4;0.0191268;9.10436;1;5;GGACCGCCG;CGCGGGG;+
}}
}}

Latest revision as of 14:44, 7 September 2012

Full Name: GGACCGCCG,motif717,CNhs11974,T:2128.0(39.17%),B:23861.1(31.93%),P:1e-28

Motif matrix
POACGT
12.128406.4481717.2962.128
2210.6722.1281649.2266
31553.442.1282.128570.304
4780.9761134.2242.128210.672
52.1282121.6162.1282.128
6359.6322.1281764.1122.128
7263.8721859.8722.1282.128
82.1281651.328472.4162.128
9304.3042.1281625.792195.776

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation

IME1#MA0320.1-30.00291821.3890616GGACCGCCGCCGCCGAG+
abi4#MA0123.110.004800072.2848319GGACCGCCGGGGGGCACCG-
SNT2#MA0384.120.008465854.0297419GGACCGCCGTGGTAGCGCCG+
lin-14#MA0261.1-10.008889474.2313916GGACCGCCGGAACAC+
STB5#MA0392.1-10.009836944.6823818GGACCGCCGTAACACCG-
STP1#MA0394.1-30.009836944.6823816GGACCGCCGGCGCCGCA-
YLL054C#MA0429.1-20.01004774.7826917GGACCGCCGTCGGCCG-
Macho-1#MA0118.100.01062735.0585919GGACCGCCGGAACCCCCA-
UGA3#MA0410.1-10.01647567.8423918GGACCGCCGTCCCGCCG-
SUT1#MA0399.1-40.01912689.1043615GGACCGCCGCGCGGGG+