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MacroAPE 1083:SOX17 f2: Difference between revisions

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099312!10534-107G3;0.542065!10429-106D6;0.660703!10464-106H5;0.790518!10827-111C8;0.802733!10789-110H6;0.957562!10828-111C9;0.733078!10788-110H5;0.945402!10792-110H9;0.849182!10765-110E9;0.667601!10829-111D1;0.768038!10830-111D2;0.621226!10831-111D3;0.866714!10832-111D4;0.959646!10833-111D5;0.833182!10764-110E8;0.833022!10770-110F5;0.812445!10399-106A3;0.763722!10400-106A4;0.520463!10405-106A9;0.384669!10834-111D6;0.463628!10835-111D7;0.77352!10836-111D8;0.911678!10837-111D9;0.441559!10699-109G6;0.143504!10802-111A1;0.751741!10796-110I4;0.843645!10010-101C1;0.576857!10810-111A9;0.917025!10421-106C7;0.537677!10708-109H6;0.922597!12235-129G3;0.00908121!12236-129G4;0.655329!12237-129G5;0.988597!10167-103B5;0.454372!10151-102I7;0.757966!10428-106D5;0.765967!10795-110I3;0.777488!10805-111A4;0.877966!10052-101G7;0.678899!10189-103D9;0.111588!10589-108D4;0.283976!10425-106D2;0.811914!10427-106D4;0.506414!10702-109G9;0.923411!10432-106D9;0.504059!10496-107C1;0.0549542!10718-109I7;0.0203545!10011-101C2;0.468284!10053-101G8;0.196768!10686-109F2;0.348683!10084-102B3;0.805222!10012-101C3;0.319518!10085-102B4;0.304557!10482-107A5;0.277914!10419-106C5;0.455886!10080-102A8;0.377599!10760-110E4;0.904553!10709-109H7;0.175148!10710-109H8;0.568825!10703-109H1;0.383801!10719-109I8;0.322075!10642-109A3;0.275012!10177-103C6;0.443977!10164-103B2;0.625491!10173-103C2;0.921539!10166-103B4;0.234893!10083-102B2;0.384187!10188-103D8;0.14674!10552-107I3;0.395123!10553-107I4;0.780215!10013-101C4;0.111501!10536-107G5;0.641172!10618-108G6;0.99507!10423-106C9;0.964002!10785-110H2;0.523747!12238-129G6;0.896481!12239-129G7;0.288253!12240-129G8;0.0213855!10416-106C2;0.193916!10801-110I9;0.64507!10766-110F1;0.377855!10824-111C5;0.441049!10825-111C6;0.812196!10826-111C7;0.98699!10454-106G4;0.931135!10409-106B4;0.602956!10638-108I8;0.57574!10636-108I6;0.0119992!10513-107D9;0.912205!10420-106C6;0.496141!10082-102B1;0.189889!10014-101C5;0.232891!10070-101I7;0.298839!10452-106G2;0.355213!10453-106G3;0.317606!10449-106F8;0.550377!10042-101F6;0.790719!10069-101I6;0.0594685!10193-103E4;0.194603!10631-108I1;0.4136!10438-106E6;0.643926!10488-107B2;0.309216!10196-103E7;0.371262!10071-101I8;0.723676!10071-101I8;0.283892!10041-101F5;0.442605!10451-106G1;0.805514!10450-106F9;0.449343!10604-108F1;0.613792!10605-108F2;0.0618157!10606-108F3;0.241111!10603-108E9;0.121146!10497-107C2;0.0784422!10448-106F7;0.49639!10643-109A4;0.107558!10426-106D3;0.319636!10431-106D8;0.0193646!10197-103E8;0.073372!10443-106F2;0.683682!10815-111B5;0.250508!10816-111B6;0.668781!10817-111B7;0.476521!10015-101C6;0.543825!10410-106B5;0.275985!10054-101G9;0.850099!10758-110E2;0.415878!10711-109H9;0.00789285!10040-101F4;0.830792!10470-106I2;0.436255!10415-106C1;0.204708!10198-103E9;0.445957!10614-108G2;0.128441!10612-108F9;0.221255!10549-107H9;0.7194!10615-108G3;0.451143!10487-107B1;0.739526!10433-106E1;0.510431!10688-109F4;0.0829465!10444-106F3;0.0913419!10444-106F3;0.00647297!10485-107A8;0.00704487!10413-106B8;0.673425!10175-103C4;0.0976643!10161-103A8;0.420199!12131-128D7;0.328115!10624-108H3;0.363095!10712-109I1;0.343236!10205-103F7;0.994252!10206-103F8;0.129029!10207-103F9;0.0185029!10050-101G5;0.51864!10051-101G6;0.500892!10016-101C7;0.254403!10046-101G1;0.191732!10778-110G4;0.0389324!10633-108I3;0.330976!10818-111B8;0.203478!10819-111B9;0.403046!10820-111C1;0.455746!10484-107A7;0.478953!10808-111A7;0.147087!10169-103B7;0.895131!10153-102I9;0.490649!13425-144D5;0.665819!13433-144E4;0.726135!13437-144E8;0.5211!11904-125F5;0.528025!11905-125F6;0.898312!10039-101F3;0.932984!10791-110H8;0.427641!10017-101C8;0.0124376!10045-101F9;0.511316!10509-107D5;0.988171!10839-111E2;0.81656!10692-109F8;0.816766!10079-102A7;0.132214!10078-102A6;0.689777!10721-110A1;0.362531!10569-108B2;0.368606!10570-108B3;0.945523!10571-108B4;0.976768!10647-109A8;0.815859!10752-110D5;0.526302!10782-110G8;0.328441!10726-110A6;0.608284!10018-101C9;0.522393!10086-102B5;0.767102!10182-103D2;0.994479!10165-103B3;0.387713!10499-107C4;0.393072!10408-106B3;0.180802!10019-101D1;0.382453!10068-101I5;0.919515!10075-102A3;0.532363!10077-102A5;0.893538!10727-110A7;0.599307!10775-110G1;0.902359!10412-106B7;0.243585!12231-129F8;0.161408!12232-129F9;0.912501!12233-129G1;0.790673!12234-129G2;0.565777!10414-106B9;0.577084!10170-103B8;0.406266!10183-103D3;0.545138!10150-102I6;0.455744!10174-103C3;0.559734!10155-103A2;0.499595!10038-101F2;0.325749!10838-111E1;0.177276!10759-110E3;0.569875!10514-107E1;0.761794!10465-106H6;0.231536!10691-109F7;0.22732!10843-111E6;0.0115424!10844-111E7;0.541832!11747-123G1;0.826513!11748-123G2;0.962214!11749-123G3;0.713758!11750-123G4;0.972503!11751-123G5;0.551228!11840-124H4;0.0910761!11752-123G6;0.711026!11753-123G7;0.637337!11754-123G8;0.99707!11755-123G9;0.881812!11756-123H1;0.988672!11833-124G6;0.553097!11760-123H5;0.746085!11836-124G9;0.996975!11758-123H3;0.623482!11835-124G8;0.185556!11762-123H7;0.922543!11838-124H2;0.673679!11757-123H2;0.953443!11759-123H4;0.473714!11761-123H6;0.941086!11842-124H6;0.881925!11837-124H1;0.932907!10568-108B1;0.859393!13230-141I8;0.684614!13231-141I9;0.602329!10696-109G3;0.611316!10493-107B7;0.167523!10494-107B8;0.133336!10850-111F4;0.460752!10851-111F5;0.877629!10852-111F6;0.129694!10853-111F7;0.158826!10854-111F8;0.150521!10855-111F9;0.0266711!10856-111G1;0.50448!10847-111F1;0.871784!10846-111E9;0.0366723!10848-111F2;0.400025!10845-111E8;0.0708388!10857-111G2;0.380371!10858-111G3;0.288586!10156-103A3;0.0084033!11901-125F2;0.398472!11902-125F3;0.674935!11903-125F4;0.12283!10689-109F5;0.205548!10648-109A9;0.932385!10784-110H1;0.0260693!10744-110C6;0.0575232!10772-110F7;0.800652!10474-106I6;0.426314!10600-108E6;0.493871!10684-109E9;0.446162!12226-129F3;0.810924!12227-129F4;0.0105202!10508-107D4;0.539273!10539-107G8;0.305526!10607-108F4;0.14822!10555-107I6;0.706872!10774-110F9;0.0364927!10637-108I7;0.735111!10663-109C6;0.116888!10728-110A8;0.861609!10729-110A9;0.537325!10430-106D7;0.795293!10730-110B1;0.399818!10813-111B3;0.3036!10812-111B2;0.0749105!10037-101F1;0.716755!10172-103C1;0.417727!10163-103B1;0.295317!10076-102A4;0.488853!10073-102A1;0.302079!10036-101E9;0.644141!10195-103E6;0.269615!10277-104E7;0.292537!10434-106E2;0.430561!10550-107I1;0.106878!10545-107H5;0.43574!10544-107H4;0.0795775!10704-109H2;0.0937526!10510-107D6;0.0139422!10558-107I9;0.632797!10020-101D2;0.618305!10732-110B3;0.273177!10049-101G4;0.816011!10698-109G5;0.659836!10437-106E5;0.830485!10417-106C3;0.137496!10035-101E8;0.0456014!10171-103B9;0.340383!10157-103A4;0.317344!10034-101E7;0.441759!10072-101I9;0.253765!10199-103F1;0.968735!10200-103F2;0.457783!10697-109G4;0.590962!10723-110A3;0.99088!10179-103C8;0.26917!10160-103A7;0.643924!10180-103C9;0.901779!10162-103A9;0.502434!10021-101D3;0.6639!10840-111E3;0.0722276!10706-109H4;0.846429!10033-101E6;0.224784!10032-101E5;0.279934!10490-107B4;0.235018!10439-106E7;0.244822!10022-101D4;0.417862!10176-103C5;0.25705!10469-106I1;0.87703!10067-101I4;0.409779!10411-106B6;0.336682!10471-106I3;0.015789!10030-101E3;0.172879!10475-106I7;0.300837!10787-110H4;0.949063!10477-106I9;0.699232!10695-109G2;0.50238!11771-123I7;0.0118631!11772-123I8;0.102926!11773-123I9;0.582346!10093-102C3;0.545908!10442-106F1;0.401751!10442-106F1;0.468254!10201-103F3;0.559901!10639-108I9;0.805186!11843-124H7;0.412922!11841-124H5;0.0448689!10693-109F9;0.009645!10436-106E4;0.560512!10483-107A6;0.673265!10282-104F3;0.356116!10023-101D5;0.596687!10066-101I3;0.466143!10065-101I2;0.444737!10800-110I8;0.357053!10610-108F7;0.587158!10841-111E4;0.644839!10541-107H1;0.543892!10842-111E5;0.97927!10562-108A4;0.998879!10024-101D6;0.884048!10064-101I1;0.606721!10609-108F6;0.576041!10048-101G3;0.498374!10781-110G7;0.33489!10181-103D1;0.839643!10159-103A6;0.212403!10056-101H2;0.170574!10737-110B8;0.251667!10025-101D7;0.924992!10044-101F8;0.669698!10424-106D1;0.654669!10463-106H4;0.643904!10616-108G4;0.14405!10486-107A9;0.0233017!10062-101H8;0.522203!10202-103F4;0.0311289!10158-103A5;0.660222!10441-106E9;0.0935663!10031-101E4;0.871353!10063-101H9;0.225134!10063-101H9;0.603336!11763-123H8;0.220084!11765-123I1;0.0273043!11768-123I4;0.0246642!10807-111A6;0.1047!10790-110H7;0.676834!10798-110I6;0.234138!10786-110H3;0.274711!10591-108D6;0.770025!10593-108D8;0.663365!10590-108D5;0.856835!10026-101D8;0.511029!10096-102C6;0.0265719!10168-103B6;0.000131206!10154-103A1;0.267971!10209-103G2;0.324762!10061-101H7;0.958807!10027-101D9;0.548861!10043-101F7;0.341783!10783-110G9;0.797522!10028-101E1;0.00431064!10060-101H6;0.68687!10203-103F5;0.518569!10059-101H5;0.885384!10047-101G2;0.61549!10029-101E2;0.96719!10058-101H4;0.632347!10418-106C4;0.264315!10492-107B6;0.483124!10694-109G1;0.0355696!10797-110I5;0.164723!10057-101H3;0.163769!10100-102D1;0.00826309!10055-101H1;0.644464!10204-103F6;0.60594!10191-103E2;0.332635!10563-108A5;0.33983
|name=SOX17_f2
|name=SOX17_f2
|tomtom_result=Sox17#MA0078.1;-1;6.78295e-09;3.22868e-06;6.44891e-06;9;GGACAATGAAGATTGTTG;GACAATGAG;-!SOX9#MA0077.1;0;0.000312655;0.148824;0.148629;9;GGACAATGAAGATTGTTG;GAACAATGG;+!D#MA00445.1;1;0.000676879;0.322194;0.160925;10;GGACAATGAAGATTGTTG;AGAACAATGGA;-!SOX10#MA0442.1;-2;0.00067704;0.322271;0.160925;6;GGACAATGAAGATTGTTG;ACAAAG;-!ROX1#MA0371.1;2;0.0022874;1.0888;0.434952;10;GGACAATGAAGATTGTTG;GAGAACAATGGA;-!MATA1#MA0327.1;0;0.0033151;1.57799;0.525308;7;GGACAATGAAGATTGTTG;ACACAAT;+!Sox5#MA0087.1;0;0.00529482;2.52034;0.719154;7;GGACAATGAAGATTGTTG;AAACAAT;+!Pax4#MA0068.1;12;0.00669393;3.18631;0.795535;18;GGACAATGAAGATTGTTG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!STB3#MA0390.1;0;0.0110835;5.27573;0.998691;18;GGACAATGAAGATTGTTG;CCAGAGTGAAAAATTTTGGAC;-!ttk#MA0460.1;2;0.0147421;7.01725;0.998691;7;GGACAATGAAGATTGTTG;AAGGATAAT;+
}}
}}

Latest revision as of 14:48, 7 September 2012

Full Name: SOX17_f2

Motif matrix
POACGT
18.8237582351987416.06880180357634223.210440892500868.927213316205659
24.86466587724892611.7993442026057340.366204167626940.0
357.03021424748160.00.00.0
40.057.03021424748160.00.0
557.03021424748160.00.00.0
657.03021424748160.00.00.0
70.00.00.057.0302142474816
810.8678436611125561.966557367100958640.262698485066183.933114734201912
921.6321310381105220.020.7006304966173514.697452712753732
1018.7340731295164145.89967210130286517.69901630390859314.697452712753732
1112.73089534565273915.73245893680765716.7675157624154211.79934420260573
1236.433089433425015.8996721013028650.014.697452712753732
1311.799344202605733.001614192708750.042.229255852167114
140.00.08.79778061145086648.23243363603079
150.00.035.3980832093710821.632131038110522
161.96655736710095860.017.69901630390859337.36464057647202
170.02.89810851014796768.9012862940116245.230819443322034
184.5541867807319754.55418678073197539.4345391710837358.487301514933868

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Sox17#MA0078.1-16.78295e-093.22868e-066.44891e-069GGACAATGAAGATTGTTGGACAATGAG-
SOX9#MA0077.100.0003126550.1488240.1486299GGACAATGAAGATTGTTGGAACAATGG+
D#MA00445.110.0006768790.3221940.16092510GGACAATGAAGATTGTTGAGAACAATGGA-
SOX10#MA0442.1-20.000677040.3222710.1609256GGACAATGAAGATTGTTGACAAAG-
ROX1#MA0371.120.00228741.08880.43495210GGACAATGAAGATTGTTGGAGAACAATGGA-
MATA1#MA0327.100.00331511.577990.5253087GGACAATGAAGATTGTTGACACAAT+
Sox5#MA0087.100.005294822.520340.7191547GGACAATGAAGATTGTTGAAACAAT+
Pax4#MA0068.1120.006693933.186310.79553518GGACAATGAAGATTGTTGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
STB3#MA0390.100.01108355.275730.99869118GGACAATGAAGATTGTTGCCAGAGTGAAAAATTTTGGAC-
ttk#MA0460.120.01474217.017250.9986917GGACAATGAAGATTGTTGAAGGATAAT+
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