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MacroAPE 1083:3-AGAAAAVGGAACT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;93.534;0.119;11.305;14.042!2;8.568;8.33;101.983;0.119!3;103.649;2.737;12.495;0.119!4;104.839;2.856;8.449;2.856!5;74.613;14.042;16.303;14.042...")
 
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2179-129A1;0.0350931!12180-129A2;9.8898e-05!12181-129A3;2.85674e-05!12176-128I7;0.000114169!12177-128I8;0.000101056!12182-129A4;0.00036349!12183-129A5;7.8714e-05!12184-129A6;0.000101613!10809-111A8;9.30786e-05!10597-108E3;0.161105!10717-109I6;0.0677121!10455-106G5;0.0853348!10534-107G3;0.0341116!10429-106D6;0.838124!10464-106H5;0.426416!10827-111C8;0.610774!10789-110H6;0.00051715!10828-111C9;0.0274022!10788-110H5;0.00112339!10792-110H9;0.00987746!10765-110E9;0.000167813!10829-111D1;0.0150533!10830-111D2;0.0545741!10831-111D3;0.0231387!10832-111D4;0.0137817!10833-111D5;0.137909!10764-110E8;0.038651!10770-110F5;0.191333!10399-106A3;0.0389208!10400-106A4;0.269283!10405-106A9;0.191376!10834-111D6;0.266066!10835-111D7;0.0494461!10836-111D8;0.692042!10837-111D9;0.660351!10699-109G6;0.128259!10802-111A1;0.193018!10796-110I4;0.16881!10010-101C1;0.106763!10810-111A9;0.589602!10421-106C7;0.025657!10708-109H6;0.16656!12235-129G3;0.0484189!12236-129G4;0.297288!12237-129G5;0.902228!10167-103B5;0.760455!10151-102I7;0.334796!10428-106D5;0.619797!10795-110I3;0.0546664!10805-111A4;0.332226!10052-101G7;0.103924!10189-103D9;0.924747!10589-108D4;0.000643971!10425-106D2;0.022809!10427-106D4;0.00194037!10702-109G9;0.00893477!10432-106D9;0.646056!10496-107C1;0.00199014!10718-109I7;0.275153!10011-101C2;0.0388371!10053-101G8;0.8713!10686-109F2;0.00034623!10084-102B3;0.000611892!10012-101C3;0.207328!10085-102B4;0.25076!10482-107A5;0.286821!10419-106C5;0.247556!10080-102A8;0.93075!10760-110E4;0.966837!10709-109H7;0.206548!10710-109H8;0.100797!10703-109H1;0.112168!10719-109I8;0.0313369!10642-109A3;0.134626!10177-103C6;0.0448895!10164-103B2;0.368394!10173-103C2;0.435893!10166-103B4;0.219794!10083-102B2;0.311112!10188-103D8;0.205937!10552-107I3;0.182172!10553-107I4;0.522899!10013-101C4;0.232441!10536-107G5;0.834486!10618-108G6;0.147031!10423-106C9;0.426417!10785-110H2;0.241824!12238-129G6;0.422156!12239-129G7;0.882821!12240-129G8;0.312118!10416-106C2;0.622483!10801-110I9;0.447529!10766-110F1;0.0835745!10824-111C5;0.0304731!10825-111C6;0.901169!10826-111C7;0.958714!10454-106G4;0.916712!10409-106B4;0.185206!10638-108I8;0.631732!10636-108I6;0.093121!10513-107D9;0.0200335!10420-106C6;0.00402423!10082-102B1;0.257196!10014-101C5;0.735071!10070-101I7;0.780449!10452-106G2;0.684309!10453-106G3;0.835815!10449-106F8;0.622034!10042-101F6;0.520414!10069-101I6;0.348973!10193-103E4;0.725042!10631-108I1;0.289152!10438-106E6;0.218413!10488-107B2;0.00858726!10196-103E7;0.238732!10071-101I8;0.606179!10071-101I8;0.787338!10041-101F5;0.299935!10451-106G1;0.363057!10450-106F9;0.0707734!10604-108F1;0.036816!10605-108F2;0.0160137!10606-108F3;0.00769259!10603-108E9;0.0128478!10497-107C2;0.00679723!10448-106F7;0.0453696!10643-109A4;0.00667196!10426-106D3;0.176346!10431-106D8;0.126127!10197-103E8;0.0301598!10443-106F2;0.7581!10815-111B5;0.330679!10816-111B6;0.144115!10817-111B7;0.15849!10015-101C6;0.127528!10410-106B5;0.878225!10054-101G9;0.336063!10758-110E2;0.217084!10711-109H9;0.571632!10040-101F4;0.273132!10470-106I2;0.241283!10415-106C1;0.0147917!10198-103E9;0.00431784!10614-108G2;0.320549!10612-108F9;0.0235663!10549-107H9;0.202738!10615-108G3;0.0282892!10487-107B1;0.121373!10433-106E1;0.253012!10688-109F4;0.0202989!10444-106F3;0.26624!10444-106F3;0.0880241!10485-107A8;0.111422!10413-106B8;0.134869!10175-103C4;0.295254!10161-103A8;0.273357!12131-128D7;0.650856!10624-108H3;0.000383977!10712-109I1;0.745795!10205-103F7;0.0725825!10206-103F8;0.873734!10207-103F9;0.762694!10050-101G5;0.827819!10051-101G6;0.174772!10016-101C7;0.599754!10046-101G1;0.968989!10778-110G4;0.594507!10633-108I3;0.642828!10818-111B8;0.113812!10819-111B9;0.0459603!10820-111C1;0.0547031!10484-107A7;0.0563747!10808-111A7;0.027019!10169-103B7;0.116716!10153-102I9;0.603917!13425-144D5;0.609301!13433-144E4;0.00251885!13437-144E8;0.00469537!11904-125F5;0.00516568!11905-125F6;0.00248531!10039-101F3;0.0353335!10791-110H8;0.241766!10017-101C8;0.276807!10045-101F9;0.661208!10509-107D5;0.992988!10839-111E2;0.505594!10692-109F8;0.402606!10079-102A7;0.0143516!10078-102A6;0.704776!10721-110A1;0.86428!10569-108B2;0.49112!10570-108B3;0.965437!10571-108B4;0.784509!10647-109A8;0.573772!10752-110D5;0.0200427!10782-110G8;0.46092!10726-110A6;0.544544!10018-101C9;0.00230848!10086-102B5;0.963138!10182-103D2;0.705701!10165-103B3;0.194813!10499-107C4;0.420738!10408-106B3;0.000187739!10019-101D1;0.00203579!10068-101I5;0.271736!10075-102A3;0.319119!10077-102A5;0.0989082!10727-110A7;0.00037642!10775-110G1;0.159919!10412-106B7;0.207976!12231-129F8;0.989136!12232-129F9;0.721524!12233-129G1;0.331974!12234-129G2;0.571695!10414-106B9;0.218114!10170-103B8;0.057592!10183-103D3;0.15593!10150-102I6;0.275973!10174-103C3;0.50646!10155-103A2;0.371903!10038-101F2;0.529378!10838-111E1;0.488322!10759-110E3;0.373495!10514-107E1;0.0295733!10465-106H6;0.00194851!10691-109F7;0.0352166!10843-111E6;0.231354!10844-111E7;0.0228618!11747-123G1;0.0126436!11748-123G2;0.495173!11749-123G3;0.882032!11750-123G4;0.725828!11751-123G5;0.409982!11840-124H4;0.847436!11752-123G6;0.88837!11753-123G7;0.647559!11754-123G8;0.783308!11755-123G9;0.468469!11756-123H1;0.549372!11833-124G6;0.417395!11760-123H5;0.452811!11836-124G9;0.312013!11758-123H3;0.645969!11835-124G8;0.50054!11762-123H7;0.394718!11838-124H2;0.738762!11757-123H2;0.611366!11759-123H4;0.408956!11761-123H6;0.45132!11842-124H6;0.375449!11837-124H1;0.168044!10568-108B1;0.562083!13230-141I8;0.0022154!13231-141I9;0.879194!10696-109G3;0.849009!10493-107B7;0.0239196!10494-107B8;0.0979374!10850-111F4;0.409739!10851-111F5;0.302009!10852-111F6;0.284948!10853-111F7;0.52325!10854-111F8;0.289226!10855-111F9;0.0510559!10856-111G1;0.55936!10847-111F1;0.0889644!10846-111E9;0.00833994!10848-111F2;0.73809!10845-111E8;0.30887!10857-111G2;0.0508546!10858-111G3;0.00193818!10156-103A3;0.0269194!11901-125F2;0.467052!11902-125F3;0.0125483!11903-125F4;0.0111387!10689-109F5;0.00501141!10648-109A9;0.0896389!10784-110H1;0.169957!10744-110C6;0.436061!10772-110F7;0.324991!10474-106I6;0.0677775!10600-108E6;0.0424779!10684-109E9;0.23494!12226-129F3;0.00570028!12227-129F4;0.699163!10508-107D4;0.0898672!10539-107G8;0.269959!10607-108F4;0.289882!10555-107I6;0.0210839!10774-110F9;0.482487!10637-108I7;0.0357005!10663-109C6;0.269116!10728-110A8;0.00104073!10729-110A9;0.302286!10430-106D7;0.437719!10730-110B1;0.624542!10813-111B3;0.0198975!10812-111B2;0.982934!10037-101F1;0.104499!10172-103C1;0.253145!10163-103B1;0.262923!10076-102A4;0.457389!10073-102A1;0.215553!10036-101E9;0.356942!10195-103E6;0.189456!10277-104E7;0.329996!10434-106E2;0.405214!10550-107I1;0.468224!10545-107H5;0.0941387!10544-107H4;0.655046!10704-109H2;0.0955729!10510-107D6;0.4932!10558-107I9;0.0134759!10020-101D2;0.00355633!10732-110B3;0.565725!10049-101G4;0.140527!10698-109G5;0.988982!10437-106E5;0.326274!10417-106C3;0.0098876!10035-101E8;0.0206962!10171-103B9;0.229855!10157-103A4;0.208276!10034-101E7;0.582051!10072-101I9;0.218618!10199-103F1;0.188472!10200-103F2;0.187613!10697-109G4;0.841926!10723-110A3;0.194165!10179-103C8;0.679921!10160-103A7;0.514287!10180-103C9;0.510734!10162-103A9;0.158334!10021-101D3;0.261766!10840-111E3;0.819845!10706-109H4;0.0594741!10033-101E6;0.00749016!10032-101E5;0.233296!10490-107B4;0.22081!10439-106E7;0.0333642!10022-101D4;0.00414058!10176-103C5;0.925389!10469-106I1;0.355395!10067-101I4;0.0797229!10411-106B6;0.728246!10471-106I3;0.00772559!10030-101E3;0.0286422!10475-106I7;0.131616!10787-110H4;0.183087!10477-106I9;0.313475!10695-109G2;0.65529!11771-123I7;0.962707!11772-123I8;0.125644!11773-123I9;0.211435!10093-102C3;0.361493!10442-106F1;0.434083!10442-106F1;0.0108432!10201-103F3;0.00882224!10639-108I9;0.6485!11843-124H7;0.104569!11841-124H5;0.224451!10693-109F9;0.233282!10436-106E4;0.0237514!10483-107A6;0.101551!10282-104F3;0.0653834!10023-101D5;0.819489!10066-101I3;0.72107!10065-101I2;0.691163!10800-110I8;0.703676!10610-108F7;0.000909913!10841-111E4;0.0185659!10541-107H1;0.171827!10842-111E5;0.0375033!10562-108A4;0.268689!10024-101D6;0.00393885!10064-101I1;0.826075!10609-108F6;0.864317!10048-101G3;0.0245302!10781-110G7;0.980754!10181-103D1;0.118915!10159-103A6;0.681154!10056-101H2;0.638108!10737-110B8;0.264015!10025-101D7;0.538639!10044-101F8;0.00215222!10424-106D1;0.0203495!10463-106H4;0.0215463!10616-108G4;0.58185!10486-107A9;0.215202!10062-101H8;0.00130899!10202-103F4;0.378942!10158-103A5;0.0986614!10441-106E9;0.914374!10031-101E4;0.495776!10063-101H9;0.179369!10063-101H9;0.317757!11763-123H8;0.941698!11765-123I1;0.658452!11768-123I4;0.285064!10807-111A6;0.777159!10790-110H7;0.0439928!10798-110I6;0.136417!10786-110H3;0.197319!10591-108D6;0.018601!10593-108D8;0.138186!10590-108D5;0.119722!10026-101D8;0.0253053!10096-102C6;0.199417!10168-103B6;0.107803!10154-103A1;0.143565!10209-103G2;0.474843!10061-101H7;0.921118!10027-101D9;0.359007!10043-101F7;0.00231085!10783-110G9;0.00134865!10028-101E1;4.45365e-05!10060-101H6;0.206729!10203-103F5;0.768282!10059-101H5;0.873373!10047-101G2;0.566374!10029-101E2;0.00795495!10058-101H4;0.534763!10418-106C4;0.714879!10492-107B6;0.0422372!10694-109G1;0.0360356!10797-110I5;0.619977!10057-101H3;0.0063114!10100-102D1;0.942779!10055-101H1;0.644461!10204-103F6;0.373781!10191-103E2;0.982186!10563-108A5;0.0162805
|name=3-AGAAAAVGGAACT,CNhs13229,BestGuess:SPIB_f1_HM09(0.724101944953052),T:119.0(4.85%),B:617.2(1.33%),P:1e-31
|name=3-AGAAAAVGGAACT,CNhs13229,BestGuess:SPIB_f1_HM09(0.724101944953052),T:119.0(4.85%),B:617.2(1.33%),P:1e-31
|tomtom_result=STAT1#MA0137.1;0;2.1969e-05;0.0104572;0.020865;13;AGAAAACGGAACT;GGAAAACGAAACTG;+!IRF1#MA0050.1;-1;0.0017522;0.834047;0.558247;12;AGAAAACGGAACT;GAAAGCGAAACC;+!YKL222C#MA0428.1;-4;0.00176335;0.839356;0.558247;9;AGAAAACGGAACT;AACGGAAAT;+!AZF1#MA0277.1;-2;0.0031941;1.52039;0.633418;9;AGAAAACGGAACT;AAAAAGAAA;+!YRM1#MA0438.1;-5;0.00400749;1.90756;0.633418;8;AGAAAACGGAACT;ACGGAAAT;+!id1#MA0120.1;0;0.00401264;1.91001;0.633418;12;AGAAAACGGAACT;CGAAAAGGAAAA;-!SPI1#MA0080.2;-6;0.00466853;2.22222;0.633418;6;AGAAAACGGAACT;CGGAAG;+!YBR239C#MA0420.1;-4;0.00707444;3.36743;0.839868;8;AGAAAACGGAACT;ACCGGAAC;+!ELF5#MA0136.1;-5;0.0120626;5.74179;0.997635;8;AGAAAACGGAACT;AAGGAAGTA;-!SPI1#MA0080.2;-6;0.016891;8.04013;0.997635;7;AGAAAACGGAACT;AGGAAGT;+!Klf4#MA0039.1;1;0.0170416;8.11178;0.997635;9;AGAAAACGGAACT;TAAAGGAAGG;+!TBP#MA0108.2;2;0.0178773;8.5096;0.997635;13;AGAAAACGGAACT;GTATAAAAGGCGGGG;+!SPIB#MA0081.1;-4;0.0179236;8.53162;0.997635;7;AGAAAACGGAACT;AGAGGAA;+!HMG-I/Y#MA0045.1;2;0.0183053;8.71332;0.997635;13;AGAAAACGGAACT;CAACAAATGGAAAAAC;+!TBP#MA0108.2;2;0.0185589;8.83405;0.997635;13;AGAAAACGGAACT;GTATAAAAGGCGGGG;+!HSF1#MA0319.1;-5;0.0195506;9.3061;0.997635;8;AGAAAACGGAACT;ATGGAACA;+!LYS14#MA0325.1;-5;0.0205895;9.8006;0.997635;8;AGAAAACGGAACT;CCGGAATT;+
}}
}}

Latest revision as of 14:49, 7 September 2012

Full Name: 3-AGAAAAVGGAACT,CNhs13229,BestGuess:SPIB_f1_HM09(0.724101944953052),T:119.0(4.85%),B:617.2(1.33%),P:1e-31

Motif matrix
POACGT
193.5340.11911.30514.042
28.5688.33101.9830.119
3103.6492.73712.4950.119
4104.8392.8568.4492.856
574.61314.04216.30314.042
691.8688.3318.6830.119
730.58347.71940.5790.119
810.712.85685.6819.754
95.5932.737110.5510.119
10104.83911.1862.8560.119
1181.03917.01720.8250.119
122.85699.8418.4497.854
138.332.7370.119107.814

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
STAT1#MA0137.102.1969e-050.01045720.02086513AGAAAACGGAACTGGAAAACGAAACTG+
IRF1#MA0050.1-10.00175220.8340470.55824712AGAAAACGGAACTGAAAGCGAAACC+
YKL222C#MA0428.1-40.001763350.8393560.5582479AGAAAACGGAACTAACGGAAAT+
AZF1#MA0277.1-20.00319411.520390.6334189AGAAAACGGAACTAAAAAGAAA+
YRM1#MA0438.1-50.004007491.907560.6334188AGAAAACGGAACTACGGAAAT+
id1#MA0120.100.004012641.910010.63341812AGAAAACGGAACTCGAAAAGGAAAA-
SPI1#MA0080.2-60.004668532.222220.6334186AGAAAACGGAACTCGGAAG+
YBR239C#MA0420.1-40.007074443.367430.8398688AGAAAACGGAACTACCGGAAC+
ELF5#MA0136.1-50.01206265.741790.9976358AGAAAACGGAACTAAGGAAGTA-
SPI1#MA0080.2-60.0168918.040130.9976357AGAAAACGGAACTAGGAAGT+
Klf4#MA0039.110.01704168.111780.9976359AGAAAACGGAACTTAAAGGAAGG+
TBP#MA0108.220.01787738.50960.99763513AGAAAACGGAACTGTATAAAAGGCGGGG+
SPIB#MA0081.1-40.01792368.531620.9976357AGAAAACGGAACTAGAGGAA+
HMG-I/Y#MA0045.120.01830538.713320.99763513AGAAAACGGAACTCAACAAATGGAAAAAC+
TBP#MA0108.220.01855898.834050.99763513AGAAAACGGAACTGTATAAAAGGCGGGG+
HSF1#MA0319.1-50.01955069.30610.9976358AGAAAACGGAACTATGGAACA+
LYS14#MA0325.1-50.02058959.80060.9976358AGAAAACGGAACTCCGGAATT+
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