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MacroAPE 1083:PAX3 Rh4-PAX3:FKHR-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;593;52;147;215!2;3;599;404;1!3;1;751;1;254!4;475;6;509;17!5;18;1;76;912!6;195;3;794;15!7;788;15;103;101!8;88;917;1;1!9;224;102;25;656!10;965...")
 
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.0356403!10827-111C8;0.0278636!10789-110H6;3.42194e-05!10828-111C9;0.00769492!10788-110H5;0.0162238!10792-110H9;0.00253861!10765-110E9;0.00269109!10829-111D1;0.00066679!10830-111D2;5.46177e-05!10831-111D3;0.0329702!10832-111D4;0.00081481!10833-111D5;0.0152406!10764-110E8;0.0208302!10770-110F5;0.0113696!10399-106A3;0.00125397!10400-106A4;0.0149229!10405-106A9;0.00947344!10834-111D6;0.009665!10835-111D7;6.58407e-05!10836-111D8;0.0369494!10837-111D9;0.132334!10699-109G6;0.0123841!10802-111A1;0.058144!10796-110I4;0.00389653!10010-101C1;0.5623!10810-111A9;0.342439!10421-106C7;0.579248!10708-109H6;0.00689703!12235-129G3;0.185972!12236-129G4;0.054748!12237-129G5;0.90011!10167-103B5;0.120054!10151-102I7;0.953459!10428-106D5;0.761104!10795-110I3;0.142958!10805-111A4;0.0066635!10052-101G7;0.420567!10189-103D9;0.544853!10589-108D4;0.159006!10425-106D2;0.191418!10427-106D4;0.0311721!10702-109G9;0.229824!10432-106D9;0.136869!10496-107C1;0.814008!10718-109I7;0.21538!10011-101C2;0.000610198!10053-101G8;0.875681!10686-109F2;0.195123!10084-102B3;0.295911!10012-101C3;0.703492!10085-102B4;0.931904!10482-107A5;0.767471!10419-106C5;0.527321!10080-102A8;0.531686!10760-110E4;0.326502!10709-109H7;0.264919!10710-109H8;0.690183!10703-109H1;0.820415!10719-109I8;0.291372!10642-109A3;0.282213!10177-103C6;0.221744!10164-103B2;0.877111!10173-103C2;0.813786!10166-103B4;0.775745!10083-102B2;0.788158!10188-103D8;0.566199!10552-107I3;0.787972!10553-107I4;0.886555!10013-101C4;0.211818!10536-107G5;0.605875!10618-108G6;0.468331!10423-106C9;0.0539444!10785-110H2;0.457757!12238-129G6;0.304502!12239-129G7;0.18784!12240-129G8;0.746902!10416-106C2;0.746394!10801-110I9;0.0209675!10766-110F1;8.12873e-05!10824-111C5;0.0383522!10825-111C6;0.0593648!10826-111C7;0.083617!10454-106G4;0.0885551!10409-106B4;0.0542401!10638-108I8;0.0925069!10636-108I6;0.399114!10513-107D9;0.482629!10420-106C6;0.261426!10082-102B1;0.639104!10014-101C5;0.417652!10070-101I7;0.275043!10452-106G2;0.332482!10453-106G3;0.130429!10449-106F8;0.116824!10042-101F6;0.0910621!10069-101I6;0.370017!10193-103E4;0.920811!10631-108I1;0.722442!10438-106E6;0.127176!10488-107B2;0.946946!10196-103E7;0.287018!10071-101I8;0.690895!10071-101I8;0.279522!10041-101F5;0.79896!10451-106G1;0.194343!10450-106F9;0.445281!10604-108F1;0.198289!10605-108F2;0.195112!10606-108F3;0.472164!10603-108E9;0.290593!10497-107C2;0.429291!10448-106F7;0.93099!10643-109A4;0.783773!10426-106D3;0.526218!10431-106D8;0.19616!10197-103E8;0.426098!10443-106F2;0.78203!10815-111B5;0.70861!10816-111B6;0.892549!10817-111B7;0.88884!10015-101C6;0.969539!10410-106B5;0.710638!10054-101G9;0.846!10758-110E2;0.315165!10711-109H9;0.0197226!10040-101F4;0.30174!10470-106I2;0.951528!10415-106C1;0.436245!10198-103E9;0.112067!10614-108G2;0.185452!10612-108F9;0.40864!10549-107H9;0.638103!10615-108G3;0.888676!10487-107B1;0.323661!10433-106E1;0.500814!10688-109F4;0.00149073!10444-106F3;0.493417!10444-106F3;0.00532012!10485-107A8;0.00525182!10413-106B8;0.215704!10175-103C4;0.458985!10161-103A8;0.702542!12131-128D7;0.538602!10624-108H3;0.180928!10712-109I1;0.325225!10205-103F7;0.0563384!10206-103F8;0.483555!10207-103F9;0.289968!10050-101G5;0.268974!10051-101G6;0.536414!10016-101C7;0.260863!10046-101G1;0.500603!10778-110G4;0.232175!10633-108I3;0.492088!10818-111B8;0.184664!10819-111B9;0.288352!10820-111C1;0.313989!10484-107A7;0.216722!10808-111A7;0.754551!10169-103B7;0.324116!10153-102I9;0.941143!13425-144D5;0.947135!13433-144E4;0.852614!13437-144E8;0.769066!11904-125F5;0.358526!11905-125F6;0.891306!10039-101F3;0.511619!10791-110H8;0.876897!10017-101C8;0.85482!10045-101F9;0.970406!10509-107D5;0.96137!10839-111E2;0.920053!10692-109F8;0.620744!10079-102A7;0.39276!10078-102A6;0.171271!10721-110A1;0.0885214!10569-108B2;0.802966!10570-108B3;0.193995!10571-108B4;0.257289!10647-109A8;0.398349!10752-110D5;0.113589!10782-110G8;0.0402568!10726-110A6;0.0783389!10018-101C9;0.830889!10086-102B5;0.0437795!10182-103D2;0.000771388!10165-103B3;0.950056!10499-107C4;0.961972!10408-106B3;0.951567!10019-101D1;0.702373!10068-101I5;0.507948!10075-102A3;0.4599!10077-102A5;0.415596!10727-110A7;0.0273529!10775-110G1;0.00015327!10412-106B7;0.281952!12231-129F8;0.365553!12232-129F9;0.586314!12233-129G1;0.290093!12234-129G2;0.355038!10414-106B9;0.228289!10170-103B8;0.331279!10183-103D3;0.62619!10150-102I6;0.583128!10174-103C3;0.8377!10155-103A2;0.47025!10038-101F2;0.407701!10838-111E1;0.467838!10759-110E3;0.411457!10514-107E1;0.663098!10465-106H6;0.910338!10691-109F7;0.577095!10843-111E6;0.380119!10844-111E7;0.0751538!11747-123G1;0.540692!11748-123G2;0.606706!11749-123G3;0.18902!11750-123G4;0.625038!11751-123G5;0.0391551!11840-124H4;0.136094!11752-123G6;0.238193!11753-123G7;0.0999672!11754-123G8;0.275422!11755-123G9;0.262205!11756-123H1;0.363453!11833-124G6;0.282873!11760-123H5;0.0131501!11836-124G9;0.278417!11758-123H3;0.0750862!11835-124G8;0.106747!11762-123H7;0.183782!11838-124H2;0.222223!11757-123H2;0.200059!11759-123H4;0.325007!11761-123H6;0.250422!11842-124H6;0.060575!11837-124H1;0.16147!10568-108B1;0.286989!13230-141I8;0.00801621!13231-141I9;0.0762316!10696-109G3;0.152485!10493-107B7;0.00342405!10494-107B8;0.389432!10850-111F4;0.691546!10851-111F5;0.0648557!10852-111F6;0.81!10853-111F7;0.29441!10854-111F8;0.24793!10855-111F9;0.0426579!10856-111G1;0.239357!10847-111F1;0.87897!10846-111E9;0.0277638!10848-111F2;0.115049!10845-111E8;0.422613!10857-111G2;0.621271!10858-111G3;0.70914!10156-103A3;0.0656285!11901-125F2;0.738479!11902-125F3;0.410329!11903-125F4;0.761647!10689-109F5;0.589357!10648-109A9;0.957822!10784-110H1;0.0813553!10744-110C6;0.486948!10772-110F7;0.146957!10474-106I6;0.0189179!10600-108E6;0.230734!10684-109E9;0.00541014!12226-129F3;0.33369!12227-129F4;0.411573!10508-107D4;0.841173!10539-107G8;0.348573!10607-108F4;0.598788!10555-107I6;0.76847!10774-110F9;0.286135!10637-108I7;0.459162!10663-109C6;0.998551!10728-110A8;0.894632!10729-110A9;0.908472!10430-106D7;0.490568!10730-110B1;0.236431!10813-111B3;0.302776!10812-111B2;0.237918!10037-101F1;0.417279!10172-103C1;0.983301!10163-103B1;0.492924!10076-102A4;0.781159!10073-102A1;0.75009!10036-101E9;0.978825!10195-103E6;0.897085!10277-104E7;0.970473!10434-106E2;0.539917!10550-107I1;0.322406!10545-107H5;0.822201!10544-107H4;0.417277!10704-109H2;0.317705!10510-107D6;0.366047!10558-107I9;0.93152!10020-101D2;0.14273!10732-110B3;0.48404!10049-101G4;0.391956!10698-109G5;0.3406!10437-106E5;0.184983!10417-106C3;0.8539!10035-101E8;0.302298!10171-103B9;0.958282!10157-103A4;0.915548!10034-101E7;0.776982!10072-101I9;0.995496!10199-103F1;0.912283!10200-103F2;0.879264!10697-109G4;0.675367!10723-110A3;0.851801!10179-103C8;0.722272!10160-103A7;0.773379!10180-103C9;0.776821!10162-103A9;0.597094!10021-101D3;0.765446!10840-111E3;0.985738!10706-109H4;0.0381956!10033-101E6;0.31948!10032-101E5;0.790727!10490-107B4;0.956886!10439-106E7;0.857601!10022-101D4;0.610042!10176-103C5;0.904618!10469-106I1;0.890351!10067-101I4;0.261738!10411-106B6;0.371518!10471-106I3;0.648074!10030-101E3;0.453449!10475-106I7;0.205393!10787-110H4;0.112457!10477-106I9;0.137782!10695-109G2;0.606974!11771-123I7;0.865319!11772-123I8;0.272948!11773-123I9;0.81382!10093-102C3;0.84571!10442-106F1;0.667495!10442-106F1;0.0116802!10201-103F3;0.0184363!10639-108I9;0.550373!11843-124H7;0.484568!11841-124H5;0.574872!10693-109F9;0.956201!10436-106E4;0.268111!10483-107A6;0.801715!10282-104F3;0.590579!10023-101D5;0.702857!10066-101I3;0.881391!10065-101I2;0.88572!10800-110I8;0.903915!10610-108F7;0.331658!10841-111E4;0.190817!10541-107H1;0.628839!10842-111E5;0.477673!10562-108A4;0.382729!10024-101D6;0.640615!10064-101I1;0.444061!10609-108F6;0.084811!10048-101G3;0.291358!10781-110G7;0.509902!10181-103D1;0.847002!10159-103A6;0.787021!10056-101H2;0.368814!10737-110B8;0.652047!10025-101D7;0.194023!10044-101F8;0.109278!10424-106D1;0.231797!10463-106H4;0.236509!10616-108G4;0.841482!10486-107A9;0.131336!10062-101H8;0.651699!10202-103F4;0.401811!10158-103A5;0.900768!10441-106E9;0.456895!10031-101E4;0.576045!10063-101H9;0.989479!10063-101H9;0.884191!11763-123H8;0.232205!11765-123I1;0.0407089!11768-123I4;0.0398725!10807-111A6;0.151253!10790-110H7;0.733244!10798-110I6;0.623918!10786-110H3;0.420409!10591-108D6;0.525915!10593-108D8;0.461006!10590-108D5;0.448008!10026-101D8;0.511895!10096-102C6;0.153979!10168-103B6;0.230435!10154-103A1;0.653417!10209-103G2;0.713567!10061-101H7;0.595287!10027-101D9;0.623898!10043-101F7;0.0504172!10783-110G9;0.160258!10028-101E1;0.59021!10060-101H6;0.680402!10203-103F5;0.513895!10059-101H5;0.711233!10047-101G2;0.799291!10029-101E2;0.474545!10058-101H4;0.988868!10418-106C4;0.922824!10492-107B6;0.194192!10694-109G1;0.157256!10797-110I5;0.170428!10057-101H3;0.244119!10100-102D1;0.993206!10055-101H1;0.884747!10204-103F6;0.243246!10191-103E2;0.535307!10563-108A5;0.521425
|name=PAX3_Rh4-PAX3:FKHR-ChIP-Seq/Homer
|name=PAX3_Rh4-PAX3:FKHR-ChIP-Seq/Homer
|tomtom_result=GCN4#MA0303.1;3;0.00037202;0.177081;0.31803;15;ACCGTGACTAATTGA;TGAAGTATGACTCATCCCTTG;-!Pdx1#MA0132.1;-7;0.00109039;0.519025;0.31803;6;ACCGTGACTAATTGA;CTAATT;+!Pax2#MA0067.1;-1;0.00182851;0.870369;0.375286;8;ACCGTGACTAATTGA;GCGTGACT;-!STB3#MA0390.1;2;0.00408191;1.94299;0.375286;15;ACCGTGACTAATTGA;CCAGAGTGAAAAATTTTGGAC;-!Fos#MA0099.1;-3;0.00485369;2.31036;0.375286;8;ACCGTGACTAATTGA;GTGAGTCA;+!AP1#MA0099.2;-4;0.00513883;2.44608;0.375286;7;ACCGTGACTAATTGA;TGACTCA;+!OdsH#MA0455.1;-7;0.00546379;2.60076;0.375286;7;ACCGTGACTAATTGA;CTAATTA;+!OdsH#MA0455.1;-7;0.00546379;2.60076;0.375286;7;ACCGTGACTAATTGA;CTAATTA;+!Pph13#MA0200.1;-7;0.00615984;2.93208;0.375286;7;ACCGTGACTAATTGA;CTAATTA;+!PHDP#MA0457.1;-7;0.0069245;3.29606;0.375286;7;ACCGTGACTAATTGA;TTAATTA;+!CG9876#MA0184.1;-7;0.00733482;3.49138;0.375286;7;ACCGTGACTAATTGA;CTAATTA;+!Rx#MA0202.1;-7;0.00733482;3.49138;0.375286;7;ACCGTGACTAATTGA;CTAATTA;+!ro#MA0241.1;-7;0.00733482;3.49138;0.375286;7;ACCGTGACTAATTGA;CTAATTA;+!inv#MA0229.1;-6;0.00744606;3.54432;0.375286;8;ACCGTGACTAATTGA;TCTAATTA;+!ap#MA0209.1;-7;0.00776563;3.69644;0.375286;7;ACCGTGACTAATTGA;CTAATTA;+!Ubx#MA0094.1;-8;0.00878151;4.18;0.375286;4;ACCGTGACTAATTGA;TAAT;+!Prrx2#MA0075.1;-8;0.00904385;4.30487;0.375286;5;ACCGTGACTAATTGA;TAATT;-!HOXA5#MA0158.1;-5;0.00916831;4.36412;0.375286;8;ACCGTGACTAATTGA;CACTAATT;+!CUP9#MA0288.1;-4;0.00963718;4.5873;0.375286;9;ACCGTGACTAATTGA;TGACACATT;+!PPARG#MA0066.1;7;0.0100221;4.7705;0.375286;13;ACCGTGACTAATTGA;GTAGGTCACGGTGACCTACT;+!Lim3#MA0195.1;-7;0.0102572;4.88241;0.375286;7;ACCGTGACTAATTGA;TTAATTA;+!ind#MA0228.1;-7;0.0108314;5.15576;0.375286;7;ACCGTGACTAATTGA;CTAATTA;+!HAT5#MA0008.1;-6;0.0112403;5.35038;0.375286;8;ACCGTGACTAATTGA;AATAATTG;-!eve#MA0221.1;-7;0.0114343;5.44272;0.375286;7;ACCGTGACTAATTGA;CTAATGA;+!en#MA0220.1;-7;0.0127303;6.05964;0.375286;7;ACCGTGACTAATTGA;TTAATTA;+!Nobox#MA0125.1;-6;0.0130602;6.21667;0.375286;8;ACCGTGACTAATTGA;ACCAATTA;-!CG13424#MA0175.1;-7;0.0134251;6.39037;0.375286;7;ACCGTGACTAATTGA;TTAATTG;+!E5#MA0189.1;-7;0.0134251;6.39037;0.375286;7;ACCGTGACTAATTGA;TTAATTA;+!NFE2L2#MA0150.1;-3;0.013843;6.58927;0.375286;11;ACCGTGACTAATTGA;ATGACTCAGCA;+!CG18599#MA0177.1;-7;0.0141537;6.73714;0.375286;7;ACCGTGACTAATTGA;CTAATTA;+!Vsx1#MA0181.1;-7;0.0141537;6.73714;0.375286;7;ACCGTGACTAATTGA;TTAATTA;+!ems#MA0219.1;-7;0.0141537;6.73714;0.375286;7;ACCGTGACTAATTGA;TTAATGA;+!YAP7#MA0419.1;-1;0.0164951;7.85168;0.401245;11;ACCGTGACTAATTGA;TGCTTACTAAT;-!NFE2L1::MafG#MA0089.1;-2;0.0165677;7.88621;0.401245;6;ACCGTGACTAATTGA;CATGAC;+!SMP1#MA0383.1;0;0.0169696;8.07751;0.401245;15;ACCGTGACTAATTGA;TGCTAATTTAATTATAGGTAA;-!Awh#MA0167.1;-7;0.0174297;8.29655;0.401245;7;ACCGTGACTAATTGA;TTAATTA;+!otp#MA0236.1;-7;0.0183426;8.7311;0.401245;7;ACCGTGACTAATTGA;TTAATTA;+!unpg#MA0251.1;-7;0.0183426;8.7311;0.401245;7;ACCGTGACTAATTGA;TTAATTA;+!ARG81#MA0272.1;-3;0.0202158;9.6227;0.41284;8;ACCGTGACTAATTGA;GTGACTCT;+!CG32532#MA0179.1;-7;0.0202882;9.65716;0.41284;7;ACCGTGACTAATTGA;TTAATTA;+!slou#MA0245.1;-7;0.0202882;9.65716;0.41284;7;ACCGTGACTAATTGA;TTAATTA;+!CAD1#MA0279.1;-2;0.0207932;9.89758;0.413502;10;ACCGTGACTAATTGA;GCTTACTAAT;-
}}
}}

Latest revision as of 14:50, 7 September 2012

Full Name: PAX3_Rh4-PAX3:FKHR-ChIP-Seq/Homer

Motif matrix
POACGT
159352147215
235994041
317511254
4475650917
518176912
6195379415
778815103101
88891711
922410225656
109652391
111004111
12922218875
1360214196537
14275200293239
15324218272193

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
GCN4#MA0303.130.000372020.1770810.3180315ACCGTGACTAATTGATGAAGTATGACTCATCCCTTG-
Pdx1#MA0132.1-70.001090390.5190250.318036ACCGTGACTAATTGACTAATT+
Pax2#MA0067.1-10.001828510.8703690.3752868ACCGTGACTAATTGAGCGTGACT-
STB3#MA0390.120.004081911.942990.37528615ACCGTGACTAATTGACCAGAGTGAAAAATTTTGGAC-
Fos#MA0099.1-30.004853692.310360.3752868ACCGTGACTAATTGAGTGAGTCA+
AP1#MA0099.2-40.005138832.446080.3752867ACCGTGACTAATTGATGACTCA+
OdsH#MA0455.1-70.005463792.600760.3752867ACCGTGACTAATTGACTAATTA+
OdsH#MA0455.1-70.005463792.600760.3752867ACCGTGACTAATTGACTAATTA+
Pph13#MA0200.1-70.006159842.932080.3752867ACCGTGACTAATTGACTAATTA+
PHDP#MA0457.1-70.00692453.296060.3752867ACCGTGACTAATTGATTAATTA+
CG9876#MA0184.1-70.007334823.491380.3752867ACCGTGACTAATTGACTAATTA+
Rx#MA0202.1-70.007334823.491380.3752867ACCGTGACTAATTGACTAATTA+
ro#MA0241.1-70.007334823.491380.3752867ACCGTGACTAATTGACTAATTA+
inv#MA0229.1-60.007446063.544320.3752868ACCGTGACTAATTGATCTAATTA+
ap#MA0209.1-70.007765633.696440.3752867ACCGTGACTAATTGACTAATTA+
Ubx#MA0094.1-80.008781514.180.3752864ACCGTGACTAATTGATAAT+
Prrx2#MA0075.1-80.009043854.304870.3752865ACCGTGACTAATTGATAATT-
HOXA5#MA0158.1-50.009168314.364120.3752868ACCGTGACTAATTGACACTAATT+
CUP9#MA0288.1-40.009637184.58730.3752869ACCGTGACTAATTGATGACACATT+
PPARG#MA0066.170.01002214.77050.37528613ACCGTGACTAATTGAGTAGGTCACGGTGACCTACT+
Lim3#MA0195.1-70.01025724.882410.3752867ACCGTGACTAATTGATTAATTA+
ind#MA0228.1-70.01083145.155760.3752867ACCGTGACTAATTGACTAATTA+
HAT5#MA0008.1-60.01124035.350380.3752868ACCGTGACTAATTGAAATAATTG-
eve#MA0221.1-70.01143435.442720.3752867ACCGTGACTAATTGACTAATGA+
en#MA0220.1-70.01273036.059640.3752867ACCGTGACTAATTGATTAATTA+
Nobox#MA0125.1-60.01306026.216670.3752868ACCGTGACTAATTGAACCAATTA-
CG13424#MA0175.1-70.01342516.390370.3752867ACCGTGACTAATTGATTAATTG+
E5#MA0189.1-70.01342516.390370.3752867ACCGTGACTAATTGATTAATTA+
NFE2L2#MA0150.1-30.0138436.589270.37528611ACCGTGACTAATTGAATGACTCAGCA+
CG18599#MA0177.1-70.01415376.737140.3752867ACCGTGACTAATTGACTAATTA+
Vsx1#MA0181.1-70.01415376.737140.3752867ACCGTGACTAATTGATTAATTA+
ems#MA0219.1-70.01415376.737140.3752867ACCGTGACTAATTGATTAATGA+
YAP7#MA0419.1-10.01649517.851680.40124511ACCGTGACTAATTGATGCTTACTAAT-
NFE2L1::MafG#MA0089.1-20.01656777.886210.4012456ACCGTGACTAATTGACATGAC+
SMP1#MA0383.100.01696968.077510.40124515ACCGTGACTAATTGATGCTAATTTAATTATAGGTAA-
Awh#MA0167.1-70.01742978.296550.4012457ACCGTGACTAATTGATTAATTA+
otp#MA0236.1-70.01834268.73110.4012457ACCGTGACTAATTGATTAATTA+
unpg#MA0251.1-70.01834268.73110.4012457ACCGTGACTAATTGATTAATTA+
ARG81#MA0272.1-30.02021589.62270.412848ACCGTGACTAATTGAGTGACTCT+
CG32532#MA0179.1-70.02028829.657160.412847ACCGTGACTAATTGATTAATTA+
slou#MA0245.1-70.02028829.657160.412847ACCGTGACTAATTGATTAATTA+
CAD1#MA0279.1-20.02079329.897580.41350210ACCGTGACTAATTGAGCTTACTAAT-
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