MacroAPE 1083:12-GWTYKNKNTTG: Difference between revisions
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(Created page with "{{Macroape_1083
|PWM=PO;A;C;G;T!1;37.128;40.443;550.953;34.476!2;264.537;33.813;27.846;336.804!3;17.238;207.519;25.857;412.386!4;20.553;315.588;15.912;310.284!5;22.542;100.77...") |
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!10827-111C8;0.497022!10789-110H6;0.347842!10828-111C9;0.1236!10788-110H5;0.99782!10792-110H9;0.342313!10765-110E9;0.23938!10829-111D1;0.15341!10830-111D2;0.318457!10831-111D3;0.595109!10832-111D4;0.385392!10833-111D5;0.328762!10764-110E8;0.409194!10770-110F5;0.771665!10399-106A3;0.104848!10400-106A4;0.246007!10405-106A9;0.220614!10834-111D6;0.289193!10835-111D7;0.71645!10836-111D8;0.72553!10837-111D9;0.470621!10699-109G6;0.337837!10802-111A1;0.764466!10796-110I4;0.596022!10010-101C1;0.130176!10810-111A9;0.526754!10421-106C7;0.709911!10708-109H6;0.638896!12235-129G3;0.311256!12236-129G4;0.596505!12237-129G5;0.527272!10167-103B5;0.193173!10151-102I7;0.751148!10428-106D5;0.67944!10795-110I3;0.0381924!10805-111A4;0.331439!10052-101G7;0.892453!10189-103D9;0.822258!10589-108D4;0.797799!10425-106D2;0.621248!10427-106D4;0.37704!10702-109G9;0.309121!10432-106D9;0.502309!10496-107C1;0.810058!10718-109I7;0.962552!10011-101C2;0.640068!10053-101G8;0.496549!10686-109F2;0.422974!10084-102B3;0.664961!10012-101C3;0.881676!10085-102B4;0.760963!10482-107A5;0.620544!10419-106C5;0.389964!10080-102A8;0.861746!10760-110E4;0.899958!10709-109H7;0.24905!10710-109H8;0.501072!10703-109H1;0.661813!10719-109I8;0.671071!10642-109A3;0.83011!10177-103C6;0.453603!10164-103B2;0.835286!10173-103C2;0.724539!10166-103B4;0.500846!10083-102B2;0.416469!10188-103D8;0.587437!10552-107I3;0.537917!10553-107I4;0.268867!10013-101C4;0.546763!10536-107G5;0.781048!10618-108G6;3.54192e-09!10423-106C9;0.386711!10785-110H2;0.482987!12238-129G6;0.238626!12239-129G7;0.81584!12240-129G8;0.707925!10416-106C2;0.704312!10801-110I9;0.635594!10766-110F1;0.673495!10824-111C5;0.349932!10825-111C6;0.674451!10826-111C7;0.621769!10454-106G4;0.636473!10409-106B4;0.227526!10638-108I8;0.428053!10636-108I6;0.563225!10513-107D9;0.447704!10420-106C6;0.256419!10082-102B1;0.931137!10014-101C5;0.85227!10070-101I7;0.914227!10452-106G2;0.879621!10453-106G3;0.292149!10449-106F8;0.196856!10042-101F6;0.205389!10069-101I6;0.802391!10193-103E4;0.615809!10631-108I1;0.716337!10438-106E6;0.643353!10488-107B2;0.846629!10196-103E7;0.893003!10071-101I8;0.963149!10071-101I8;0.555938!10041-101F5;0.545971!10451-106G1;0.483456!10450-106F9;0.073665!10604-108F1;0.362688!10605-108F2;0.559517!10606-108F3;0.996361!10603-108E9;0.594978!10497-107C2;0.615862!10448-106F7;0.719085!10643-109A4;0.583492!10426-106D3;0.960673!10431-106D8;0.11072!10197-103E8;0.389387!10443-106F2;0.541333!10815-111B5;0.573011!10816-111B6;0.725971!10817-111B7;0.725408!10015-101C6;0.78012!10410-106B5;0.701978!10054-101G9;0.0702792!10758-110E2;0.446042!10711-109H9;0.0113164!10040-101F4;0.41464!10470-106I2;0.61974!10415-106C1;0.575142!10198-103E9;0.246087!10614-108G2;0.99267!10612-108F9;0.196133!10549-107H9;0.903726!10615-108G3;0.467359!10487-107B1;0.743942!10433-106E1;0.36786!10688-109F4;0.803971!10444-106F3;0.712247!10444-106F3;0.676005!10485-107A8;0.650404!10413-106B8;0.070882!10175-103C4;0.275495!10161-103A8;0.814307!12131-128D7;0.860992!10624-108H3;0.475242!10712-109I1;0.461602!10205-103F7;0.2256!10206-103F8;0.961544!10207-103F9;0.952594!10050-101G5;0.783088!10051-101G6;0.230421!10016-101C7;0.447789!10046-101G1;0.507127!10778-110G4;0.455482!10633-108I3;0.923186!10818-111B8;0.905545!10819-111B9;0.61796!10820-111C1;0.629151!10484-107A7;0.590965!10808-111A7;0.374142!10169-103B7;0.571169!10153-102I9;0.606625!13425-144D5;0.650137!13433-144E4;0.754844!13437-144E8;0.901879!11904-125F5;0.959649!11905-125F6;0.336819!10039-101F3;0.917853!10791-110H8;0.599516!10017-101C8;0.328703!10045-101F9;0.182613!10509-107D5;0.418666!10839-111E2;0.739755!10692-109F8;0.155809!10079-102A7;0.708702!10078-102A6;0.915161!10721-110A1;0.323128!10569-108B2;0.854702!10570-108B3;0.602473!10571-108B4;0.925845!10647-109A8;0.892871!10752-110D5;0.929258!10782-110G8;0.933087!10726-110A6;0.560788!10018-101C9;0.218239!10086-102B5;0.741476!10182-103D2;0.901519!10165-103B3;0.920418!10499-107C4;0.857401!10408-106B3;0.844158!10019-101D1;0.571622!10068-101I5;0.571889!10075-102A3;0.847376!10077-102A5;0.766844!10727-110A7;0.769447!10775-110G1;0.591671!10412-106B7;0.974352!12231-129F8;0.231127!12232-129F9;0.648093!12233-129G1;0.970974!12234-129G2;0.932657!10414-106B9;0.958207!10170-103B8;0.92821!10183-103D3;0.562745!10150-102I6;0.776819!10174-103C3;0.660829!10155-103A2;0.732063!10038-101F2;0.748938!10838-111E1;0.641837!10759-110E3;0.420036!10514-107E1;0.000654271!10465-106H6;0.547304!10691-109F7;0.403734!10843-111E6;0.417123!10844-111E7;0.758174!11747-123G1;0.848203!11748-123G2;0.591545!11749-123G3;0.573372!11750-123G4;0.627864!11751-123G5;0.0652245!11840-124H4;0.0397549!11752-123G6;0.0581088!11753-123G7;0.249946!11754-123G8;0.0877693!11755-123G9;0.864889!11756-123H1;0.754874!11833-124G6;0.84798!11760-123H5;0.436349!11836-124G9;0.477146!11758-123H3;0.746666!11835-124G8;0.880385!11762-123H7;0.8602!11838-124H2;0.0586056!11757-123H2;0.381002!11759-123H4;0.645525!11761-123H6;0.655668!11842-124H6;0.179602!11837-124H1;0.414091!10568-108B1;0.661443!13230-141I8;0.98364!13231-141I9;0.446862!10696-109G3;0.436087!10493-107B7;0.626788!10494-107B8;0.434504!10850-111F4;0.326786!10851-111F5;0.329344!10852-111F6;0.591526!10853-111F7;0.558838!10854-111F8;0.148138!10855-111F9;0.221038!10856-111G1;0.248239!10847-111F1;0.755128!10846-111E9;0.0936457!10848-111F2;0.510519!10845-111E8;0.724883!10857-111G2;0.864485!10858-111G3;0.518528!10156-103A3;0.0732326!11901-125F2;0.708594!11902-125F3;0.554757!11903-125F4;0.619749!10689-109F5;0.662069!10648-109A9;0.212139!10784-110H1;0.432741!10744-110C6;0.909608!10772-110F7;0.342775!10474-106I6;0.491981!10600-108E6;0.567926!10684-109E9;0.543791!12226-129F3;0.0355986!12227-129F4;0.102182!10508-107D4;0.765087!10539-107G8;0.267617!10607-108F4;0.935235!10555-107I6;0.338297!10774-110F9;0.427813!10637-108I7;0.895607!10663-109C6;0.553374!10728-110A8;0.765582!10729-110A9;0.577335!10430-106D7;0.901083!10730-110B1;0.601858!10813-111B3;0.648971!10812-111B2;0.576039!10037-101F1;0.787737!10172-103C1;0.66696!10163-103B1;0.72267!10076-102A4;0.87359!10073-102A1;0.725793!10036-101E9;0.52745!10195-103E6;0.721067!10277-104E7;0.721293!10434-106E2;0.716927!10550-107I1;0.0435411!10545-107H5;0.900531!10544-107H4;0.128961!10704-109H2;0.242986!10510-107D6;0.483858!10558-107I9;0.590919!10020-101D2;0.600592!10732-110B3;0.996601!10049-101G4;0.0621942!10698-109G5;0.251196!10437-106E5;0.317727!10417-106C3;0.0526689!10035-101E8;0.427601!10171-103B9;0.631152!10157-103A4;0.627168!10034-101E7;0.743046!10072-101I9;0.689736!10199-103F1;0.562057!10200-103F2;0.62755!10697-109G4;0.954724!10723-110A3;0.463218!10179-103C8;0.167661!10160-103A7;0.374198!10180-103C9;0.338483!10162-103A9;0.763926!10021-101D3;0.659738!10840-111E3;0.312136!10706-109H4;0.248525!10033-101E6;0.0346664!10032-101E5;0.579505!10490-107B4;0.652401!10439-106E7;0.45192!10022-101D4;0.646502!10176-103C5;0.875464!10469-106I1;0.739902!10067-101I4;0.49836!10411-106B6;0.724552!10471-106I3;0.874512!10030-101E3;0.813462!10475-106I7;0.171585!10787-110H4;0.884087!10477-106I9;0.563267!10695-109G2;0.924495!11771-123I7;0.938205!11772-123I8;0.00175742!11773-123I9;0.0415526!10093-102C3;0.124237!10442-106F1;0.519956!10442-106F1;0.836875!10201-103F3;0.720711!10639-108I9;0.865286!11843-124H7;0.15471!11841-124H5;0.637621!10693-109F9;0.595821!10436-106E4;0.723214!10483-107A6;0.691503!10282-104F3;0.11271!10023-101D5;0.476314!10066-101I3;0.918064!10065-101I2;0.234378!10800-110I8;0.910298!10610-108F7;0.15335!10841-111E4;0.8742!10541-107H1;0.152516!10842-111E5;0.460424!10562-108A4;0.40061!10024-101D6;0.0144051!10064-101I1;0.289219!10609-108F6;0.234428!10048-101G3;0.553868!10781-110G7;0.55305!10181-103D1;0.344968!10159-103A6;0.856607!10056-101H2;0.680861!10737-110B8;0.681507!10025-101D7;0.951894!10044-101F8;0.258824!10424-106D1;0.0844207!10463-106H4;0.943283!10616-108G4;0.822312!10486-107A9;0.294224!10062-101H8;0.783634!10202-103F4;0.992055!10158-103A5;0.781731!10441-106E9;0.819653!10031-101E4;0.413218!10063-101H9;0.665089!10063-101H9;0.570095!11763-123H8;0.369664!11765-123I1;0.383134!11768-123I4;0.107149!10807-111A6;0.498586!10790-110H7;0.777152!10798-110I6;0.76554!10786-110H3;0.939164!10591-108D6;0.51083!10593-108D8;0.867205!10590-108D5;0.488637!10026-101D8;0.849359!10096-102C6;0.822994!10168-103B6;0.830167!10154-103A1;0.860394!10209-103G2;0.808307!10061-101H7;0.664035!10027-101D9;0.972326!10043-101F7;0.453439!10783-110G9;0.535976!10028-101E1;0.0256031!10060-101H6;0.952408!10203-103F5;0.713011!10059-101H5;0.853976!10047-101G2;0.60812!10029-101E2;0.517913!10058-101H4;0.745244!10418-106C4;0.858804!10492-107B6;0.515824!10694-109G1;0.193024!10797-110I5;0.951898!10057-101H3;0.488248!10100-102D1;0.790879!10055-101H1;0.604249!10204-103F6;0.712489!10191-103E2;0.839161!10563-108A5;0.641814 | ||
|name=12-GWTYKNKNTTG,CNhs11955,BestGuess:BRCA1_f1_HM09(0.666699894093852),T:663.0(15.80%),B:4371.9(10.11%),P:1e-29 | |name=12-GWTYKNKNTTG,CNhs11955,BestGuess:BRCA1_f1_HM09(0.666699894093852),T:663.0(15.80%),B:4371.9(10.11%),P:1e-29 | ||
|tomtom_result=BRCA1#MA0133.1;-5;0.00332551;1.58294;1;6;GTTCTTTTTTG;GTGTTGT;-!id1#MA0120.1;1;0.00369704;1.75979;1;11;GTTCTTTTTTG;TTTTCCTTTTCG;+!HMG-I/Y#MA0045.1;2;0.00371086;1.76637;1;11;GTTCTTTTTTG;GTTTTTCCATTTGTTG;-!NDT80#MA0343.1;0;0.00593426;2.82471;1;11;GTTCTTTTTTG;TTGCGTTTTTGTGGCCGGAAA;-!FKH1#MA0296.1;-2;0.00731037;3.47974;1;9;GTTCTTTTTTG;TCCTCTTTGTTTACAATTCA;-!hb#MA0049.1;-1;0.00738397;3.51477;1;10;GTTCTTTTTTG;TTTTTTATGC;-!HAP4#MA0315.1;2;0.00991873;4.72132;1;11;GTTCTTTTTTG;TCGCCTCTGATTGGT;-!br_Z3#MA0012.1;0;0.0114553;5.45274;1;11;GTTCTTTTTTG;CTTTTAGTTTA;-!MGA1#MA0336.1;8;0.0120449;5.73335;1;11;GTTCTTTTTTG;TTTAGAGTGTTCTATAGTCCT;-!exd#MA0222.1;-6;0.0187545;8.92715;1;5;GTTCTTTTTTG;TTTTGACA;+!Tcfcp2l1#MA0145.1;3;0.0207976;9.89964;1;11;GTTCTTTTTTG;CTGGTTTGAACTGG;- | |||
}} | }} |
Latest revision as of 14:54, 7 September 2012
Full Name: 12-GWTYKNKNTTG,CNhs11955,BestGuess:BRCA1_f1_HM09(0.666699894093852),T:663.0(15.80%),B:4371.9(10.11%),P:1e-29
Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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|
Sample specificity
The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon
TomTom analysis
<br>Analyst: Michiel de Hoon and Hiroko Ohmiya
Target_ID | Optimal_offset | p-value | E-value | q-value | Overlap | Query consensus | Target consensus | Orientation |
---|---|---|---|---|---|---|---|---|
BRCA1#MA0133.1 | -5 | 0.00332551 | 1.58294 | 1 | 6 | GTTCTTTTTTG | GTGTTGT | - |
id1#MA0120.1 | 1 | 0.00369704 | 1.75979 | 1 | 11 | GTTCTTTTTTG | TTTTCCTTTTCG | + |
HMG-I/Y#MA0045.1 | 2 | 0.00371086 | 1.76637 | 1 | 11 | GTTCTTTTTTG | GTTTTTCCATTTGTTG | - |
NDT80#MA0343.1 | 0 | 0.00593426 | 2.82471 | 1 | 11 | GTTCTTTTTTG | TTGCGTTTTTGTGGCCGGAAA | - |
FKH1#MA0296.1 | -2 | 0.00731037 | 3.47974 | 1 | 9 | GTTCTTTTTTG | TCCTCTTTGTTTACAATTCA | - |
hb#MA0049.1 | -1 | 0.00738397 | 3.51477 | 1 | 10 | GTTCTTTTTTG | TTTTTTATGC | - |
HAP4#MA0315.1 | 2 | 0.00991873 | 4.72132 | 1 | 11 | GTTCTTTTTTG | TCGCCTCTGATTGGT | - |
br_Z3#MA0012.1 | 0 | 0.0114553 | 5.45274 | 1 | 11 | GTTCTTTTTTG | CTTTTAGTTTA | - |
MGA1#MA0336.1 | 8 | 0.0120449 | 5.73335 | 1 | 11 | GTTCTTTTTTG | TTTAGAGTGTTCTATAGTCCT | - |
exd#MA0222.1 | -6 | 0.0187545 | 8.92715 | 1 | 5 | GTTCTTTTTTG | TTTTGACA | + |
Tcfcp2l1#MA0145.1 | 3 | 0.0207976 | 9.89964 | 1 | 11 | GTTCTTTTTTG | CTGGTTTGAACTGG | - |