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MacroAPE 1083:4-TTYCTCTKCWGMR: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;0.845;140.27;16.055;687.83!2;0.845;318.565;23.66;501.93!3;4.225;439.4;3.38;397.995!4;0.845;828.1;0.845;15.21!5;271.245;69.29;16.055;488.41!6...")
 
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28I8;0.00103793!12182-129A4;0.000221208!12183-129A5;0.00108093!12184-129A6;0.000313914!10809-111A8;0.00201128!10597-108E3;0.0323575!10717-109I6;0.210535!10455-106G5;0.102392!10534-107G3;0.137266!10429-106D6;0.831261!10464-106H5;0.288721!10827-111C8;0.542529!10789-110H6;0.317093!10828-111C9;0.834483!10788-110H5;0.612173!10792-110H9;0.389295!10765-110E9;0.332775!10829-111D1;0.46041!10830-111D2;0.502247!10831-111D3;0.615885!10832-111D4;0.413876!10833-111D5;0.333957!10764-110E8;0.430873!10770-110F5;0.758144!10399-106A3;0.180137!10400-106A4;0.806714!10405-106A9;0.664476!10834-111D6;0.846094!10835-111D7;0.580738!10836-111D8;0.687042!10837-111D9;0.618497!10699-109G6;0.992252!10802-111A1;0.512362!10796-110I4;0.486431!10010-101C1;0.0106837!10810-111A9;0.483285!10421-106C7;0.177934!10708-109H6;0.113508!12235-129G3;0.00242686!12236-129G4;0.0392728!12237-129G5;0.594031!10167-103B5;0.0542571!10151-102I7;0.0396538!10428-106D5;0.0582933!10795-110I3;0.2247!10805-111A4;0.138621!10052-101G7;0.593554!10189-103D9;0.782215!10589-108D4;0.051306!10425-106D2;0.194365!10427-106D4;0.394724!10702-109G9;0.106508!10432-106D9;0.676724!10496-107C1;0.324058!10718-109I7;0.11433!10011-101C2;0.893145!10053-101G8;0.574842!10686-109F2;0.00678597!10084-102B3;0.584403!10012-101C3;0.193208!10085-102B4;0.04091!10482-107A5;0.47852!10419-106C5;0.0107593!10080-102A8;0.0444508!10760-110E4;0.59856!10709-109H7;0.0123922!10710-109H8;0.0663838!10703-109H1;0.0577261!10719-109I8;0.183729!10642-109A3;0.398941!10177-103C6;0.541213!10164-103B2;0.0959627!10173-103C2;0.0636808!10166-103B4;0.0486992!10083-102B2;0.0322706!10188-103D8;0.12429!10552-107I3;0.0500001!10553-107I4;0.0584221!10013-101C4;0.130892!10536-107G5;0.704291!10618-108G6;0.537971!10423-106C9;0.0256979!10785-110H2;0.0593719!12238-129G6;0.0266736!12239-129G7;0.144109!12240-129G8;0.118108!10416-106C2;0.396963!10801-110I9;0.277882!10766-110F1;0.754438!10824-111C5;0.890644!10825-111C6;0.552592!10826-111C7;0.622615!10454-106G4;0.80432!10409-106B4;0.306865!10638-108I8;0.823613!10636-108I6;0.00157237!10513-107D9;0.135074!10420-106C6;0.0156201!10082-102B1;0.211748!10014-101C5;0.531218!10070-101I7;0.50703!10452-106G2;0.979879!10453-106G3;0.424319!10449-106F8;0.403022!10042-101F6;0.333134!10069-101I6;0.196351!10193-103E4;0.703023!10631-108I1;0.130056!10438-106E6;0.417473!10488-107B2;0.0647555!10196-103E7;0.0102341!10071-101I8;0.696469!10071-101I8;0.766377!10041-101F5;0.168627!10451-106G1;0.0135319!10450-106F9;0.128299!10604-108F1;0.10812!10605-108F2;0.020397!10606-108F3;0.0303086!10603-108E9;0.0646116!10497-107C2;0.0606512!10448-106F7;0.128176!10643-109A4;0.0083366!10426-106D3;0.0388924!10431-106D8;0.302748!10197-103E8;0.110003!10443-106F2;0.796038!10815-111B5;0.474085!10816-111B6;0.207848!10817-111B7;0.209772!10015-101C6;0.190992!10410-106B5;0.876148!10054-101G9;0.226997!10758-110E2;0.379848!10711-109H9;0.267406!10040-101F4;0.455983!10470-106I2;0.0445038!10415-106C1;0.0551541!10198-103E9;0.132902!10614-108G2;0.875707!10612-108F9;0.0078434!10549-107H9;0.00217439!10615-108G3;0.0309857!10487-107B1;0.0729563!10433-106E1;0.225686!10688-109F4;0.022583!10444-106F3;0.0402777!10444-106F3;0.602052!10485-107A8;0.633304!10413-106B8;0.226638!10175-103C4;0.769438!10161-103A8;0.142067!12131-128D7;0.0385722!10624-108H3;0.32521!10712-109I1;0.0502091!10205-103F7;0.403875!10206-103F8;0.688676!10207-103F9;0.753019!10050-101G5;0.477312!10051-101G6;0.026311!10016-101C7;0.345431!10046-101G1;0.638763!10778-110G4;0.928827!10633-108I3;0.936819!10818-111B8;0.0028547!10819-111B9;0.00920764!10820-111C1;0.00812665!10484-107A7;0.0143825!10808-111A7;0.0299999!10169-103B7;0.400427!10153-102I9;0.0501759!13425-144D5;0.0426272!13433-144E4;0.00196741!13437-144E8;0.00885888!11904-125F5;0.0151659!11905-125F6;0.0601639!10039-101F3;0.451593!10791-110H8;0.0705474!10017-101C8;0.00769414!10045-101F9;0.854835!10509-107D5;0.784791!10839-111E2;0.400903!10692-109F8;0.0255447!10079-102A7;0.137315!10078-102A6;0.923999!10721-110A1;0.447028!10569-108B2;0.0519015!10570-108B3;0.255814!10571-108B4;0.264473!10647-109A8;0.520535!10752-110D5;0.713808!10782-110G8;0.820846!10726-110A6;0.923058!10018-101C9;0.0101963!10086-102B5;0.149437!10182-103D2;0.498131!10165-103B3;0.144135!10499-107C4;0.0721152!10408-106B3;0.0168731!10019-101D1;0.0968619!10068-101I5;0.521783!10075-102A3;0.261668!10077-102A5;0.80319!10727-110A7;0.0128755!10775-110G1;0.0520964!10412-106B7;0.217975!12231-129F8;0.598818!12232-129F9;0.377457!12233-129G1;0.827204!12234-129G2;0.734899!10414-106B9;0.378633!10170-103B8;0.00766463!10183-103D3;0.0470088!10150-102I6;0.0465867!10174-103C3;0.028269!10155-103A2;0.101133!10038-101F2;0.0297924!10838-111E1;0.0774686!10759-110E3;0.984788!10514-107E1;0.363777!10465-106H6;0.0345157!10691-109F7;0.0140177!10843-111E6;0.00665584!10844-111E7;0.471822!11747-123G1;0.414946!11748-123G2;0.173588!11749-123G3;0.171336!11750-123G4;0.469349!11751-123G5;0.118772!11840-124H4;0.234392!11752-123G6;0.253261!11753-123G7;0.452786!11754-123G8;0.0642103!11755-123G9;0.414977!11756-123H1;0.343018!11833-124G6;0.660974!11760-123H5;0.738511!11836-124G9;0.294391!11758-123H3;0.433824!11835-124G8;0.354594!11762-123H7;0.202321!11838-124H2;0.137913!11757-123H2;0.563215!11759-123H4;0.927929!11761-123H6;0.26424!11842-124H6;0.15247!11837-124H1;0.101691!10568-108B1;0.585708!13230-141I8;0.280425!13231-141I9;0.537887!10696-109G3;0.26265!10493-107B7;0.584985!10494-107B8;0.101767!10850-111F4;0.0636938!10851-111F5;0.0724011!10852-111F6;0.8085!10853-111F7;0.228245!10854-111F8;0.228271!10855-111F9;0.298731!10856-111G1;0.102149!10847-111F1;0.147846!10846-111E9;0.190611!10848-111F2;0.132324!10845-111E8;0.00974638!10857-111G2;0.00945256!10858-111G3;0.125005!10156-103A3;0.0552969!11901-125F2;0.0282536!11902-125F3;0.189021!11903-125F4;0.44204!10689-109F5;0.440065!10648-109A9;0.0217157!10784-110H1;0.0719261!10744-110C6;0.109011!10772-110F7;0.0289838!10474-106I6;0.698563!10600-108E6;0.0129586!10684-109E9;0.824166!12226-129F3;0.934423!12227-129F4;0.0176955!10508-107D4;0.178687!10539-107G8;0.750505!10607-108F4;0.575752!10555-107I6;0.238647!10774-110F9;0.554633!10637-108I7;0.291828!10663-109C6;0.900254!10728-110A8;0.705659!10729-110A9;0.35729!10430-106D7;0.918522!10730-110B1;0.572243!10813-111B3;0.61177!10812-111B2;0.225547!10037-101F1;0.243082!10172-103C1;0.0867741!10163-103B1;0.0649891!10076-102A4;0.0233187!10073-102A1;0.120379!10036-101E9;0.280675!10195-103E6;0.0988328!10277-104E7;0.0850396!10434-106E2;0.949184!10550-107I1;0.151654!10545-107H5;0.0420705!10544-107H4;0.330188!10704-109H2;0.132186!10510-107D6;0.702857!10558-107I9;0.0355308!10020-101D2;0.255999!10732-110B3;0.828974!10049-101G4;0.223371!10698-109G5;0.0347951!10437-106E5;0.0827664!10417-106C3;0.528669!10035-101E8;0.036943!10171-103B9;0.0685817!10157-103A4;0.10007!10034-101E7;0.0291839!10072-101I9;0.0866295!10199-103F1;0.210667!10200-103F2;0.17521!10697-109G4;0.965225!10723-110A3;0.427!10179-103C8;0.0499723!10160-103A7;0.18307!10180-103C9;0.0188463!10162-103A9;0.621885!10021-101D3;0.294779!10840-111E3;0.592004!10706-109H4;0.065127!10033-101E6;0.0701783!10032-101E5;0.0767413!10490-107B4;0.077548!10439-106E7;0.0818611!10022-101D4;0.0886633!10176-103C5;0.666624!10469-106I1;0.0668433!10067-101I4;0.0342362!10411-106B6;0.883978!10471-106I3;0.000432321!10030-101E3;0.0327513!10475-106I7;0.156439!10787-110H4;0.691545!10477-106I9;0.966022!10695-109G2;0.913137!11771-123I7;0.797218!11772-123I8;0.0374762!11773-123I9;0.158629!10093-102C3;0.407597!10442-106F1;0.159144!10442-106F1;0.46911!10201-103F3;0.750694!10639-108I9;0.527709!11843-124H7;0.00780442!11841-124H5;0.00692807!10693-109F9;0.0450604!10436-106E4;0.0123133!10483-107A6;0.0576962!10282-104F3;0.00273727!10023-101D5;0.298483!10066-101I3;0.80701!10065-101I2;0.829446!10800-110I8;0.744067!10610-108F7;0.0364812!10841-111E4;0.412071!10541-107H1;0.738101!10842-111E5;0.195848!10562-108A4;0.89209!10024-101D6;0.0290639!10064-101I1;0.519952!10609-108F6;0.624122!10048-101G3;0.0292438!10781-110G7;0.912342!10181-103D1;0.00123374!10159-103A6;0.0912278!10056-101H2;0.0158597!10737-110B8;0.391914!10025-101D7;0.780516!10044-101F8;0.00107743!10424-106D1;0.0152412!10463-106H4;0.194807!10616-108G4;0.27347!10486-107A9;0.102121!10062-101H8;0.150605!10202-103F4;0.49743!10158-103A5;0.984284!10441-106E9;0.051957!10031-101E4;0.41836!10063-101H9;0.0877308!10063-101H9;0.226661!11763-123H8;0.588264!11765-123I1;0.389974!11768-123I4;0.773058!10807-111A6;0.650136!10790-110H7;0.0206696!10798-110I6;0.11202!10786-110H3;0.529153!10591-108D6;0.000408272!10593-108D8;0.0075099!10590-108D5;0.00481161!10026-101D8;0.00457173!10096-102C6;0.629719!10168-103B6;0.202348!10154-103A1;0.127346!10209-103G2;0.0424392!10061-101H7;0.831692!10027-101D9;0.756263!10043-101F7;0.00102642!10783-110G9;3.16516e-05!10028-101E1;0.0604784!10060-101H6;0.166895!10203-103F5;0.0731777!10059-101H5;0.753518!10047-101G2;0.344395!10029-101E2;0.159111!10058-101H4;0.887976!10418-106C4;0.801826!10492-107B6;0.351679!10694-109G1;0.070062!10797-110I5;0.768025!10057-101H3;0.000942646!10100-102D1;0.668772!10055-101H1;0.637805!10204-103F6;0.696286!10191-103E2;0.581246!10563-108A5;0.0617425
|name=4-TTYCTCTKCWGMR,CNhs11671,BestGuess:SPIB.p2.SwissRegulon.nucfreq(0.741062322726526),T:845.0(26.38%),B:8432.1(18.22%),P:1e-29
|name=4-TTYCTCTKCWGMR,CNhs11671,BestGuess:SPIB.p2.SwissRegulon.nucfreq(0.741062322726526),T:845.0(26.38%),B:8432.1(18.22%),P:1e-29
|tomtom_result=SPIB#MA0081.1;0;0.000472977;0.225137;0.450274;7;TTCCTCTGCAGCA;TTCCTCT;-!Pax5#MA0014.1;3;0.0013269;0.631607;0.631607;13;TTCCTCTGCAGCA;CCGCTACGCTTCAGTGCTCT;-!STB3#MA0390.1;10;0.00286115;1.36191;0.907938;11;TTCCTCTGCAGCA;GTCCAAAATTTTTCACTCTGG;+!YGR067C#MA0425.1;1;0.00408008;1.94212;0.97106;13;TTCCTCTGCAGCA;ACCCCACTTTTTTG;+!id1#MA0120.1;1;0.00669254;3.18565;1;11;TTCCTCTGCAGCA;TTTTCCTTTTCG;+!Tal1::Gata1#MA0140.1;0;0.00764721;3.64007;1;13;TTCCTCTGCAGCA;CTTATCTGTCCCCACCAG;-!Trl#MA0205.1;0;0.00957901;4.55961;1;10;TTCCTCTGCAGCA;TTGCTCTCTC;+!RME1#MA0370.1;0;0.0134168;6.3864;1;10;TTCCTCTGCAGCA;TTCCTTTGGA;-!TEAD1#MA0090.1;4;0.0146937;6.99419;1;8;TTCCTCTGCAGCA;CACATTCCTCCG;+!Klf4#MA0039.1;2;0.0158037;7.52256;1;8;TTCCTCTGCAGCA;CCTTCCTTTA;-!PHD1#MA0355.1;-3;0.0166791;7.93924;1;10;TTCCTCTGCAGCA;ACCTGCAGCA;+!GABPA#MA0062.1;-3;0.0206239;9.81698;1;10;TTCCTCTGCAGCA;CTCTTCCGGT;-
}}
}}

Latest revision as of 15:00, 7 September 2012

Full Name: 4-TTYCTCTKCWGMR,CNhs11671,BestGuess:SPIB.p2.SwissRegulon.nucfreq(0.741062322726526),T:845.0(26.38%),B:8432.1(18.22%),P:1e-29

Motif matrix
POACGT
10.845140.2716.055687.83
20.845318.56523.66501.93
34.225439.43.38397.995
40.845828.10.84515.21
5271.24569.2916.055488.41
60.845788.38551.5454.225
7184.2134.6450.845625.3
84.22543.095431.795365.885
983.655610.93515.21135.2
10331.24143.65114.92254.345
1158.305112.385615.1659.15
12242.515331.2477.74193.505
13323.63537.18296.595186.745

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
SPIB#MA0081.100.0004729770.2251370.4502747TTCCTCTGCAGCATTCCTCT-
Pax5#MA0014.130.00132690.6316070.63160713TTCCTCTGCAGCACCGCTACGCTTCAGTGCTCT-
STB3#MA0390.1100.002861151.361910.90793811TTCCTCTGCAGCAGTCCAAAATTTTTCACTCTGG+
YGR067C#MA0425.110.004080081.942120.9710613TTCCTCTGCAGCAACCCCACTTTTTTG+
id1#MA0120.110.006692543.18565111TTCCTCTGCAGCATTTTCCTTTTCG+
Tal1::Gata1#MA0140.100.007647213.64007113TTCCTCTGCAGCACTTATCTGTCCCCACCAG-
Trl#MA0205.100.009579014.55961110TTCCTCTGCAGCATTGCTCTCTC+
RME1#MA0370.100.01341686.3864110TTCCTCTGCAGCATTCCTTTGGA-
TEAD1#MA0090.140.01469376.9941918TTCCTCTGCAGCACACATTCCTCCG+
Klf4#MA0039.120.01580377.5225618TTCCTCTGCAGCACCTTCCTTTA-
PHD1#MA0355.1-30.01667917.93924110TTCCTCTGCAGCAACCTGCAGCA+
GABPA#MA0062.1-30.02062399.81698110TTCCTCTGCAGCACTCTTCCGGT-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:4-TTYCTCTKCWGMR&oldid=2134564"