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MacroAPE 1083:RGAAAGSAGAAG,motif654: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;99.53;2.775;75.11;7.585!2;27.38;2.22;113.22;42.18!3;144.3;33.3;4.81;2.59!4;135.605;5.365;38.85;5.18!5;167.61;5.735;4.255;7.4!6;28.675;48.1;7...")
 
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;0.854447!10809-111A8;0.825957!10597-108E3;0.594585!10717-109I6;0.543365!10455-106G5;0.00246263!10534-107G3;0.241281!10429-106D6;0.0139799!10464-106H5;0.301096!10827-111C8;0.357836!10789-110H6;0.145916!10828-111C9;0.433538!10788-110H5;0.0912261!10792-110H9;0.357112!10765-110E9;0.328876!10829-111D1;0.359177!10830-111D2;0.358843!10831-111D3;0.611969!10832-111D4;0.15146!10833-111D5;0.223635!10764-110E8;0.133227!10770-110F5;0.468032!10399-106A3;0.715981!10400-106A4;0.278639!10405-106A9;0.293305!10834-111D6;0.339484!10835-111D7;0.170137!10836-111D8;0.361232!10837-111D9;0.946824!10699-109G6;0.2939!10802-111A1;0.484409!10796-110I4;0.443588!10010-101C1;0.19203!10810-111A9;0.0355916!10421-106C7;0.398876!10708-109H6;0.117473!12235-129G3;0.0209735!12236-129G4;0.00597676!12237-129G5;0.953654!10167-103B5;0.0128717!10151-102I7;0.233851!10428-106D5;0.158329!10795-110I3;0.247179!10805-111A4;0.491343!10052-101G7;0.389351!10189-103D9;0.0265458!10589-108D4;0.12412!10425-106D2;0.936236!10427-106D4;0.315316!10702-109G9;0.346629!10432-106D9;0.251958!10496-107C1;4.52656e-05!10718-109I7;0.00114651!10011-101C2;0.313851!10053-101G8;0.0660457!10686-109F2;0.989516!10084-102B3;0.511919!10012-101C3;0.281395!10085-102B4;0.23021!10482-107A5;0.222808!10419-106C5;0.0550462!10080-102A8;0.00263862!10760-110E4;0.0553033!10709-109H7;0.000380127!10710-109H8;7.82082e-05!10703-109H1;0.0334336!10719-109I8;0.945493!10642-109A3;0.694259!10177-103C6;0.17003!10164-103B2;0.127704!10173-103C2;0.159229!10166-103B4;0.517795!10083-102B2;0.465291!10188-103D8;0.527605!10552-107I3;0.228837!10553-107I4;0.0220055!10013-101C4;0.0253639!10536-107G5;0.0545774!10618-108G6;0.392982!10423-106C9;0.00914364!10785-110H2;0.00404645!12238-129G6;0.00179433!12239-129G7;0.155125!12240-129G8;0.0861079!10416-106C2;0.0961608!10801-110I9;0.175244!10766-110F1;0.646457!10824-111C5;0.401187!10825-111C6;0.048697!10826-111C7;0.113583!10454-106G4;0.0669988!10409-106B4;0.141256!10638-108I8;0.165707!10636-108I6;0.00926008!10513-107D9;0.277543!10420-106C6;0.0656137!10082-102B1;0.707771!10014-101C5;0.577876!10070-101I7;0.349652!10452-106G2;0.258698!10453-106G3;0.541825!10449-106F8;0.623847!10042-101F6;0.515757!10069-101I6;0.0770524!10193-103E4;0.0337789!10631-108I1;0.170732!10438-106E6;0.102654!10488-107B2;0.0168666!10196-103E7;0.0663265!10071-101I8;0.198847!10071-101I8;0.0629442!10041-101F5;0.121559!10451-106G1;0.0137809!10450-106F9;0.340779!10604-108F1;0.550285!10605-108F2;0.12079!10606-108F3;0.0178828!10603-108E9;0.0830889!10497-107C2;0.324317!10448-106F7;0.44642!10643-109A4;0.000265027!10426-106D3;0.0485659!10431-106D8;1.68515e-07!10197-103E8;1.24599e-05!10443-106F2;0.00483702!10815-111B5;0.0269904!10816-111B6;0.000938323!10817-111B7;0.000320221!10015-101C6;0.0004521!10410-106B5;0.315566!10054-101G9;0.448212!10758-110E2;0.0766323!10711-109H9;0.0144377!10040-101F4;0.00883676!10470-106I2;0.170089!10415-106C1;0.000308989!10198-103E9;0.00258375!10614-108G2;0.00759241!10612-108F9;0.0245985!10549-107H9;0.0057511!10615-108G3;0.412817!10487-107B1;0.909985!10433-106E1;0.00174719!10688-109F4;9.31781e-06!10444-106F3;2.97962e-05!10444-106F3;0.000261747!10485-107A8;0.00115366!10413-106B8;0.167206!10175-103C4;0.812344!10161-103A8;0.15452!12131-128D7;0.0911711!10624-108H3;0.930144!10712-109I1;0.0529546!10205-103F7;0.913632!10206-103F8;0.00295502!10207-103F9;0.0293681!10050-101G5;0.147634!10051-101G6;0.173825!10016-101C7;0.0981914!10046-101G1;0.0501333!10778-110G4;0.0165081!10633-108I3;0.17081!10818-111B8;0.679886!10819-111B9;0.134769!10820-111C1;0.121312!10484-107A7;0.135131!10808-111A7;0.0393914!10169-103B7;0.42948!10153-102I9;0.214972!13425-144D5;0.145817!13433-144E4;0.477147!13437-144E8;0.589449!11904-125F5;0.597363!11905-125F6;0.157444!10039-101F3;0.0194529!10791-110H8;0.151106!10017-101C8;0.000231205!10045-101F9;0.191453!10509-107D5;0.038824!10839-111E2;0.00861574!10692-109F8;0.0211562!10079-102A7;0.000692137!10078-102A6;0.0201431!10721-110A1;0.269795!10569-108B2;0.310146!10570-108B3;0.11797!10571-108B4;0.179633!10647-109A8;0.147203!10752-110D5;0.237585!10782-110G8;0.0403732!10726-110A6;0.324136!10018-101C9;0.262943!10086-102B5;0.98285!10182-103D2;0.34911!10165-103B3;0.287064!10499-107C4;0.142818!10408-106B3;0.160564!10019-101D1;0.0344346!10068-101I5;0.00199604!10075-102A3;0.00033313!10077-102A5;0.0204926!10727-110A7;0.170774!10775-110G1;0.324864!10412-106B7;0.400058!12231-129F8;1.61753e-05!12232-129F9;0.671884!12233-129G1;0.832392!12234-129G2;0.770393!10414-106B9;0.656325!10170-103B8;0.312967!10183-103D3;0.349259!10150-102I6;0.273087!10174-103C3;0.211797!10155-103A2;0.162805!10038-101F2;0.128418!10838-111E1;0.142866!10759-110E3;0.756987!10514-107E1;0.354007!10465-106H6;0.712374!10691-109F7;0.845485!10843-111E6;0.0295547!10844-111E7;0.878968!11747-123G1;0.485366!11748-123G2;0.261188!11749-123G3;0.0393271!11750-123G4;0.0607037!11751-123G5;0.142084!11840-124H4;0.00971673!11752-123G6;0.0278018!11753-123G7;0.181143!11754-123G8;0.0782085!11755-123G9;0.604073!11756-123H1;0.690791!11833-124G6;0.757814!11760-123H5;0.370213!11836-124G9;0.253816!11758-123H3;0.12008!11835-124G8;0.039274!11762-123H7;0.018236!11838-124H2;0.251061!11757-123H2;0.442527!11759-123H4;0.914102!11761-123H6;0.0718756!11842-124H6;0.343234!11837-124H1;0.175777!10568-108B1;0.0735588!13230-141I8;0.605565!13231-141I9;0.0296052!10696-109G3;0.0499986!10493-107B7;0.0290732!10494-107B8;1.1867e-05!10850-111F4;0.00900457!10851-111F5;0.0407918!10852-111F6;0.00928247!10853-111F7;0.207508!10854-111F8;0.00624515!10855-111F9;0.109815!10856-111G1;6.81744e-05!10847-111F1;0.00498701!10846-111E9;0.0222427!10848-111F2;0.00224884!10845-111E8;0.0099941!10857-111G2;0.522031!10858-111G3;0.0741005!10156-103A3;0.0261895!11901-125F2;0.196578!11902-125F3;0.185737!11903-125F4;0.29707!10689-109F5;0.472325!10648-109A9;0.1549!10784-110H1;0.00214921!10744-110C6;1.55415e-08!10772-110F7;0.151827!10474-106I6;0.226383!10600-108E6;0.323179!10684-109E9;0.329026!12226-129F3;0.957082!12227-129F4;0.00134844!10508-107D4;0.861128!10539-107G8;0.304654!10607-108F4;0.947345!10555-107I6;0.855178!10774-110F9;0.196494!10637-108I7;0.795617!10663-109C6;0.997669!10728-110A8;0.913648!10729-110A9;0.57959!10430-106D7;0.332012!10730-110B1;0.287686!10813-111B3;0.375684!10812-111B2;0.00699642!10037-101F1;0.00316723!10172-103C1;0.131726!10163-103B1;0.302805!10076-102A4;0.175919!10073-102A1;0.264739!10036-101E9;0.298319!10195-103E6;0.180913!10277-104E7;0.219336!10434-106E2;0.311765!10550-107I1;0.000111025!10545-107H5;0.0137025!10544-107H4;0.000157947!10704-109H2;0.00759214!10510-107D6;0.026334!10558-107I9;0.491462!10020-101D2;0.253072!10732-110B3;0.0168473!10049-101G4;0.756584!10698-109G5;0.43854!10437-106E5;0.154721!10417-106C3;0.0129377!10035-101E8;4.60177e-05!10171-103B9;0.219902!10157-103A4;0.30711!10034-101E7;0.193309!10072-101I9;0.186272!10199-103F1;0.225884!10200-103F2;0.591628!10697-109G4;0.060577!10723-110A3;0.361759!10179-103C8;0.0227897!10160-103A7;0.252703!10180-103C9;0.23959!10162-103A9;0.0738601!10021-101D3;0.0306472!10840-111E3;0.648109!10706-109H4;0.5025!10033-101E6;0.886577!10032-101E5;0.302967!10490-107B4;0.194552!10439-106E7;0.000145651!10022-101D4;9.48222e-06!10176-103C5;0.0277636!10469-106I1;0.251096!10067-101I4;0.0493583!10411-106B6;0.0540478!10471-106I3;0.546883!10030-101E3;0.231348!10475-106I7;0.0791058!10787-110H4;0.873199!10477-106I9;0.132308!10695-109G2;0.0696235!11771-123I7;0.00669003!11772-123I8;0.127099!11773-123I9;0.731094!10093-102C3;0.381115!10442-106F1;0.819111!10442-106F1;0.000464084!10201-103F3;0.00173268!10639-108I9;0.252504!11843-124H7;0.423512!11841-124H5;0.17733!10693-109F9;0.472507!10436-106E4;0.406367!10483-107A6;0.013668!10282-104F3;0.441907!10023-101D5;0.320539!10066-101I3;0.227755!10065-101I2;0.00448967!10800-110I8;0.0630936!10610-108F7;0.748969!10841-111E4;0.761075!10541-107H1;0.793457!10842-111E5;0.904486!10562-108A4;0.809718!10024-101D6;0.897642!10064-101I1;0.626658!10609-108F6;0.18951!10048-101G3;0.990307!10781-110G7;0.144135!10181-103D1;0.842539!10159-103A6;0.205814!10056-101H2;0.0654065!10737-110B8;0.12338!10025-101D7;0.426897!10044-101F8;0.222744!10424-106D1;0.0250523!10463-106H4;0.406217!10616-108G4;0.00150001!10486-107A9;0.0173062!10062-101H8;0.000648307!10202-103F4;0.0467517!10158-103A5;0.248887!10441-106E9;0.0623958!10031-101E4;0.256743!10063-101H9;0.164462!10063-101H9;0.229626!11763-123H8;0.0660747!11765-123I1;0.129293!11768-123I4;0.206217!10807-111A6;0.33973!10790-110H7;0.882996!10798-110I6;0.491369!10786-110H3;0.486558!10591-108D6;0.331376!10593-108D8;0.789506!10590-108D5;0.918122!10026-101D8;0.337749!10096-102C6;0.00251119!10168-103B6;0.0248081!10154-103A1;0.190395!10209-103G2;0.0759587!10061-101H7;0.00210852!10027-101D9;0.000236312!10043-101F7;0.178209!10783-110G9;0.00383827!10028-101E1;0.592279!10060-101H6;0.000750424!10203-103F5;0.000137076!10059-101H5;0.172302!10047-101G2;0.0653378!10029-101E2;0.78712!10058-101H4;0.00410671!10418-106C4;0.00616513!10492-107B6;3.30112e-06!10694-109G1;0.00899487!10797-110I5;0.0860828!10057-101H3;0.513408!10100-102D1;0.0195035!10055-101H1;0.0157243!10204-103F6;0.0415137!10191-103E2;0.0366268!10563-108A5;0.0108607
|name=RGAAAGSAGAAG,motif654,CNhs13544,T:185.0(3.28%),B:991.0(1.25%),P:1e-29
|name=RGAAAGSAGAAG,motif654,CNhs13544,T:185.0(3.28%),B:991.0(1.25%),P:1e-29
|tomtom_result=Dof2#MA0020.1;-2;0.00382167;1.81911;1;6;AGAAAGCAGAAG;AAAGCA;+!br_Z3#MA0012.1;-1;0.00423857;2.01756;1;11;AGAAAGCAGAAG;TAAACTAAAAG;+!Su(H)#MA0085.1;5;0.00474194;2.25716;1;11;AGAAAGCAGAAG;CTGTGGGAAACGAGAT;+!IRF2#MA0051.1;6;0.00586464;2.79157;1;12;AGAAAGCAGAAG;GGAAAGCGAAACCAAAAC;+!id1#MA0120.1;1;0.0108841;5.18082;1;11;AGAAAGCAGAAG;CGAAAAGGAAAA;-!SFL1#MA0377.1;1;0.0157889;7.51554;1;12;AGAAAGCAGAAG;TAGAGAATAGAAGAAATAAAA;+!Dof3#MA0021.1;-2;0.016303;7.76024;1;6;AGAAAGCAGAAG;AAAGCG;+!Evi1#MA0029.1;1;0.018401;8.75889;1;12;AGAAAGCAGAAG;AAGATAAGATAATA;+
}}
}}

Latest revision as of 15:01, 7 September 2012

Full Name: RGAAAGSAGAAG,motif654,CNhs13544,T:185.0(3.28%),B:991.0(1.25%),P:1e-29

Motif matrix
POACGT
199.532.77575.117.585
227.382.22113.2242.18
3144.333.34.812.59
4135.6055.36538.855.18
5167.615.7354.2557.4
628.67548.177.3330.71
76.10592.1385.2851.48
8172.6052.964.444.995
97.43.515106.9367.155
1098.426.2924.0556.24
11118.9550.747.0358.275
123.51541.255133.27.03

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Dof2#MA0020.1-20.003821671.8191116AGAAAGCAGAAGAAAGCA+
br_Z3#MA0012.1-10.004238572.01756111AGAAAGCAGAAGTAAACTAAAAG+
Su(H)#MA0085.150.004741942.25716111AGAAAGCAGAAGCTGTGGGAAACGAGAT+
IRF2#MA0051.160.005864642.79157112AGAAAGCAGAAGGGAAAGCGAAACCAAAAC+
id1#MA0120.110.01088415.18082111AGAAAGCAGAAGCGAAAAGGAAAA-
SFL1#MA0377.110.01578897.51554112AGAAAGCAGAAGTAGAGAATAGAAGAAATAAAA+
Dof3#MA0021.1-20.0163037.7602416AGAAAGCAGAAGAAAGCG+
Evi1#MA0029.110.0184018.75889112AGAAAGCAGAAGAAGATAAGATAATA+
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