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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0016080;synaptic vesicle targeting;0.00788911411822714;192167!GO:0006903;vesicle targeting;0.00788911411822714;192167!GO:0042043;neurexin binding;0.00788911411822714;192167!GO:0016079;synaptic vesicle exocytosis;0.00788911411822714;192167!GO:0051650;establishment of vesicle localization;0.00788911411822714;192167!GO:0051648;vesicle localization;0.00788911411822714;192167!GO:0007416;synaptogenesis;0.0096820945996424;192167!GO:0051656;establishment of organelle localization;0.0096820945996424;192167!GO:0048489;synaptic vesicle transport;0.0096820945996424;192167!GO:0051640;organelle localization;0.0096820945996424;192167!GO:0045664;regulation of neuron differentiation;0.0096820945996424;192167!GO:0050808;synapse organization and biogenesis;0.0144633758834164;192167!GO:0007269;neurotransmitter secretion;0.0154748007703686;192167!GO:0045055;regulated secretory pathway;0.018032260841662;192167!GO:0006887;exocytosis;0.0204188836001173;192167!GO:0003001;generation of a signal involved in cell-cell signaling;0.0204188836001173;192167!GO:0001505;regulation of neurotransmitter levels;0.0204188836001173;192167!GO:0043062;extracellular structure organization and biogenesis;0.0216950638251246;192167!GO:0045211;postsynaptic membrane;0.0226293010233357;192167!GO:0044456;synapse part;0.0238645702076371;192167!GO:0045595;regulation of cell differentiation;0.0287389157163989;192167!GO:0045045;secretory pathway;0.0301844366262604;192167!GO:0007017;microtubule-based process;0.0301844366262604;192167!GO:0007268;synaptic transmission;0.0312277433846491;192167!GO:0032940;secretion by cell;0.0325031501670958;192167!GO:0019226;transmission of nerve impulse;0.0341355899346367;192167!GO:0050793;regulation of developmental process;0.0364871527968005;192167!GO:0046903;secretion;0.0364871527968005;192167!GO:0030182;neuron differentiation;0.0376773208749814;192167!GO:0048699;generation of neurons;0.0413542272326423;192167!GO:0007267;cell-cell signaling;0.0413542272326423;192167!GO:0022008;neurogenesis;0.0416643839368871;192167!GO:0030054;cell junction;0.0457807682921363;192167!GO:0016192;vesicle-mediated transport;0.0465225700207218;192167!}}
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.00295579058097792,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.000112646304636794,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.000229377808327915,-0.00235696027853551,-0.00235696027853551,0.00561320409986568,-0.000653212352298971,-0.00235696027853551,-0.00100360510079184,1.76853447999553e-05,-0.00235696027853551,0.0857209988893592,-0.00148222297864531,-0.000212622204794887,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,0.00426278265034359,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00057245067135073,0.000757312827579679,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.000715243977456709,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,0.0061047336610604,0.00695547197655436,0.0080342901309968,0.0384498230170003,0.0626801231880927,0.0410660204609175,0.000339425875542083,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,0.0898209193827788,0.0393986409764693,0.0461016778269167,0.0466922266958733,0.0304517271014322,0.0274847362198813,0.014533509086801,0.0337865911446594,0.0728760043067026,0.13540828310082,0.158876713797986,0.0375812777016935,0.0390042946847674,0.0395258793110142,0.0263182107118383,0.0788406021792211,0.244287388790844,0.273764472258156,0.186409203982726,0.0739307944253413,0.00722320994753976,0.0104766235010882,0.00422020293314465,-0.00235696027853551,0.00243669655505989,-0.00235696027853551,0.00689517126768836,-0.00235696027853551,-0.00114261720047186,0.00180749097360423,0.00404496180530478,0.00323481766579981,0.00939071684317497,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,0.00163936914202878,-0.000229209163144726,0.00773282992912668,0.0120171301268699,0.0167735280127769,0.00914802438922761,0.0300037163850387,0.0687500257278792,0.00201833987890404,-0.00235696027853551,-0.00110901352174743,-0.00235696027853551,0.0275160513192728,0.0136225296980857,0.0211301109912452,-0.00235696027853551,0.208997348561009,0.144973301861461,0.00605170879456593,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,0.217251649537357,0.237498946720997,0.0958952167508742,0.245905340334411,0.381467632117723,0.148865004040447,0.274731725847903,0.095779136449493,0.0214137238420557,0.00936729547079043,0.0768547562326658,0.189440384471656,0.0882976377437189,0.162980748021907,0.510728589487344,0.534520838401732,0.629974167124326,0.425310324054679,0.218427131752303,0.00125066764357618,0.0252988789789788,0.0359583827063414,0.0187083991917152,0.14352415666189,0.0552482148072692,0.0452982612556004,0.0476266766940872,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,0.0108057355701729,0.0271949298377634,0.0214460148905427,0.0140371441280614,0.0254846296088944,0.024976056877372,0.0176533996954798,0.0252077854007284,0.0167361831555286,0.0185664861473847,0.0186589683483779,0.00330109226409282,0.00268647796463016,-0.000522925138261202,0.00216739781338937,0.219668973624299,0.199332946223813,0.000281090097361104,-0.00235696027853551,0.057110775106969,0.114043670441015,0.0304142496651622,0.0249903461508384,0.0174308663222164,0.00986077022297768,0.011996515168035,0.0152545978362376,0.0200521188066949,0.00770305032321072,0.0171007805139307,0.00356822402318144,0.00668377128106607,0.0074531746506853,0.00406225196137388,0.0561649192447117,0.0115912645914447,0.0524146929259203,0.0418667705320683,0.0414003641115136,0.0465657812567508,0.0147167256622948,0.0129933589065134,0.00505711277548253,-0.00235696027853551,0.000494665632874513,0.000959385079806547,0.00482303543150125,-0.00235696027853551,-0.000360496979350534,-0.000260912789046321,-0.00235696027853551,0.00162672812935054,-0.00235696027853551,0.00587659423445144,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,-0.00079040949574716,0.00245333615176526,0.014016959924316,0.0206991846927303,0.0347262310428888,0.0130001714729936,0.0136898145854126,0.0256100111042332,0.0428989970647261,0.0387995145642174,0.0257717887030942,0.0140990645314301,0.0151845818465158,0.00748107123175025,-0.00235696027853551,-0.00235696027853551,-0.00235696027853551,0.00890145940929533,0.119763338921842,0.153475803243718,-0.00235696027853551,-0.00235696027853551,0.0414273628500583,0.0224299793499671,0.059010536869599,0.0144566750544589,0.0256889263448401,0.0114222094236262,0.0581210459426949,0.0684465782039637,0.033333520837074,0.209798052525257,0.01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|gostat_on_MCL_coexpression=GO:0016080;synaptic vesicle targeting;0.00788911411822714;192167!GO:0006903;vesicle targeting;0.00788911411822714;192167!GO:0042043;neurexin binding;0.00788911411822714;192167!GO:0016079;synaptic vesicle exocytosis;0.00788911411822714;192167!GO:0051650;establishment of vesicle localization;0.00788911411822714;192167!GO:0051648;vesicle localization;0.00788911411822714;192167!GO:0007416;synaptogenesis;0.0096820945996424;192167!GO:0051656;establishment of organelle localization;0.0096820945996424;192167!GO:0048489;synaptic vesicle transport;0.0096820945996424;192167!GO:0051640;organelle localization;0.0096820945996424;192167!GO:0045664;regulation of neuron differentiation;0.0096820945996424;192167!GO:0050808;synapse organization and biogenesis;0.0144633758834164;192167!GO:0007269;neurotransmitter secretion;0.0154748007703686;192167!GO:0045055;regulated secretory pathway;0.018032260841662;192167!GO:0006887;exocytosis;0.0204188836001173;192167!GO:0003001;generation of a signal involved in cell-cell signaling;0.0204188836001173;192167!GO:0001505;regulation of neurotransmitter levels;0.0204188836001173;192167!GO:0043062;extracellular structure organization and biogenesis;0.0216950638251246;192167!GO:0045211;postsynaptic membrane;0.0226293010233357;192167!GO:0044456;synapse part;0.0238645702076371;192167!GO:0045595;regulation of cell differentiation;0.0287389157163989;192167!GO:0045045;secretory pathway;0.0301844366262604;192167!GO:0007017;microtubule-based process;0.0301844366262604;192167!GO:0007268;synaptic transmission;0.0312277433846491;192167!GO:0032940;secretion by cell;0.0325031501670958;192167!GO:0019226;transmission of nerve impulse;0.0341355899346367;192167!GO:0050793;regulation of developmental process;0.0364871527968005;192167!GO:0046903;secretion;0.0364871527968005;192167!GO:0030182;neuron differentiation;0.0376773208749814;192167!GO:0048699;generation of neurons;0.0413542272326423;192167!GO:0007267;cell-cell signaling;0.0413542272326423;192167!GO:0022008;neurogenesis;0.0416643839368871;192167!GO:0030054;cell junction;0.0457807682921363;192167!GO:0016192;vesicle-mediated transport;0.0465225700207218;192167!
}}

Revision as of 11:04, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:28935822..28935827,+p@chr10:28935822..28935827
+
Mm9::chr16:74754890..74754894,-p@chr16:74754890..74754894
-
Mm9::chr16:74829090..74829095,-p@chr16:74829090..74829095
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Mm9::chr16:74961384..74961388,-p@chr16:74961384..74961388
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Mm9::chr16:75016670..75016679,-p@chr16:75016670..75016679
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Mm9::chr16:75052435..75052441,-p@chr16:75052435..75052441
-
Mm9::chr18:40415943..40415963,+p@chr18:40415943..40415963
+
Mm9::chr18:71901216..71901226,-p@chr18:71901216..71901226
-
Mm9::chr18:72318744..72318754,-p@chr18:72318744..72318754
-
Mm9::chr18:77736935..77736948,-p@chr18:77736935..77736948
-
Mm9::chr18:77769901..77769933,-p@chr18:77769901..77769933
-
Mm9::chr19:19011087..19011096,-p@chr19:19011087..19011096
-
Mm9::chr19:50694706..50694712,-p@chr19:50694706..50694712
-
Mm9::chr1:38888222..38888234,-p@chr1:38888222..38888234
-
Mm9::chr3:25435716..25435717,-p@chr3:25435716..25435717
-
Mm9::chr3:25489312..25489320,-p@chr3:25489312..25489320
-
Mm9::chr3:25571575..25571580,-p@chr3:25571575..25571580
-
Mm9::chr3:25584256..25584277,-p@chr3:25584256..25584277
-
Mm9::chr3:25597053..25597061,-p@chr3:25597053..25597061
-
Mm9::chr3:25603987..25603995,-p@chr3:25603987..25603995
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Mm9::chr3:25642170..25642173,-p@chr3:25642170..25642173
-
Mm9::chr3:25689319..25689331,-p@chr3:25689319..25689331
-
Mm9::chr3:25689516..25689560,-p@chr3:25689516..25689560
-
Mm9::chr3:25717760..25717764,-p@chr3:25717760..25717764
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Mm9::chr3:25723293..25723296,-p@chr3:25723293..25723296
-
Mm9::chr3:25734220..25734224,-p@chr3:25734220..25734224
-
Mm9::chr3:25737370..25737385,-p@chr3:25737370..25737385
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Mm9::chr3:25746253..25746268,-p@chr3:25746253..25746268
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Mm9::chr3:25746283..25746292,-p@chr3:25746283..25746292
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Mm9::chr3:25756325..25756329,-p@chr3:25756325..25756329
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Mm9::chr3:25767628..25767676,-p@chr3:25767628..25767676
-
Mm9::chr3:25926009..25926021,-p@chr3:25926009..25926021
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Mm9::chr3:25926051..25926062,-p@chr3:25926051..25926062
-
Mm9::chr3:25926177..25926188,-p@chr3:25926177..25926188
-
Mm9::chr3:25926203..25926216,-p@chr3:25926203..25926216
-
Mm9::chr3:25926282..25926291,-p@chr3:25926282..25926291
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Mm9::chr3:25926321..25926332,-p@chr3:25926321..25926332
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Mm9::chr3:25944957..25944973,-p@chr3:25944957..25944973
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Mm9::chr3:25945015..25945031,-p@chr3:25945015..25945031
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Mm9::chr3:25945353..25945362,-p@chr3:25945353..25945362
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Mm9::chr3:25958354..25958359,-p@chr3:25958354..25958359
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Mm9::chr3:26018333..26018354,-p@chr3:26018333..26018354
-
Mm9::chr3:26216750..26216752,-p@chr3:26216750..26216752
-
Mm9::chr3:26230728..26230742,-p8@Nlgn1
Mm9::chr5:100046932..100046936,-p@chr5:100046932..100046936
-
Mm9::chr6:110599092..110599106,+p@chr6:110599092..110599106
+
Mm9::chr7:131161662..131161668,+p@chr7:131161662..131161668
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0016080synaptic vesicle targeting0.00788911411822714
GO:0006903vesicle targeting0.00788911411822714
GO:0042043neurexin binding0.00788911411822714
GO:0016079synaptic vesicle exocytosis0.00788911411822714
GO:0051650establishment of vesicle localization0.00788911411822714
GO:0051648vesicle localization0.00788911411822714
GO:0007416synaptogenesis0.0096820945996424
GO:0051656establishment of organelle localization0.0096820945996424
GO:0048489synaptic vesicle transport0.0096820945996424
GO:0051640organelle localization0.0096820945996424
GO:0045664regulation of neuron differentiation0.0096820945996424
GO:0050808synapse organization and biogenesis0.0144633758834164
GO:0007269neurotransmitter secretion0.0154748007703686
GO:0045055regulated secretory pathway0.018032260841662
GO:0006887exocytosis0.0204188836001173
GO:0003001generation of a signal involved in cell-cell signaling0.0204188836001173
GO:0001505regulation of neurotransmitter levels0.0204188836001173
GO:0043062extracellular structure organization and biogenesis0.0216950638251246
GO:0045211postsynaptic membrane0.0226293010233357
GO:0044456synapse part0.0238645702076371
GO:0045595regulation of cell differentiation0.0287389157163989
GO:0045045secretory pathway0.0301844366262604
GO:0007017microtubule-based process0.0301844366262604
GO:0007268synaptic transmission0.0312277433846491
GO:0032940secretion by cell0.0325031501670958
GO:0019226transmission of nerve impulse0.0341355899346367
GO:0050793regulation of developmental process0.0364871527968005
GO:0046903secretion0.0364871527968005
GO:0030182neuron differentiation0.0376773208749814
GO:0048699generation of neurons0.0413542272326423
GO:0007267cell-cell signaling0.0413542272326423
GO:0022008neurogenesis0.0416643839368871
GO:0030054cell junction0.0457807682921363
GO:0016192vesicle-mediated transport0.0465225700207218



Relative expression of the co-expression cluster over median <br>Analyst:


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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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