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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0005083;small GTPase regulator activity;0.00509899699284794;226751,69632!GO:0030695;GTPase regulator activity;0.00821737696392652;226751,69632!GO:0007097;nuclear migration;0.00821737696392652;226751!GO:0040023;establishment of nucleus localization;0.00986004192010371;226751!GO:0051647;nucleus localization;0.00986004192010371;226751!GO:0051656;establishment of organelle localization;0.027715412429569;226751!GO:0007242;intracellular signaling cascade;0.027715412429569;226751,69632!GO:0051640;organelle localization;0.027715412429569;226751!GO:0019992;diacylglycerol binding;0.0403401200135352;226751!GO:0005089;Rho guanyl-nucleotide exchange factor activity;0.0403401200135352;69632!GO:0035023;regulation of Rho protein signal transduction;0.0403401200135352;69632!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0403401200135352;69632!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0403871732472332;226751!GO:0007266;Rho protein signal transduction;0.0468573864306494;69632!}}
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0005083;small GTPase regulator activity;0.00509899699284794;226751,69632!GO:0030695;GTPase regulator activity;0.00821737696392652;226751,69632!GO:0007097;nuclear migration;0.00821737696392652;226751!GO:0040023;establishment of nucleus localization;0.00986004192010371;226751!GO:0051647;nucleus localization;0.00986004192010371;226751!GO:0051656;establishment of organelle localization;0.027715412429569;226751!GO:0007242;intracellular signaling cascade;0.027715412429569;226751,69632!GO:0051640;organelle localization;0.027715412429569;226751!GO:0019992;diacylglycerol binding;0.0403401200135352;226751!GO:0005089;Rho guanyl-nucleotide exchange factor activity;0.0403401200135352;69632!GO:0035023;regulation of Rho protein signal transduction;0.0403401200135352;69632!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0403401200135352;69632!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0403871732472332;226751!GO:0007266;Rho protein signal transduction;0.0468573864306494;69632!
}}

Revision as of 11:27, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr1:181890115..181890211,+p1@Cdc42bpa
Mm9::chr5:8567093..8567110,+p@chr5:8567093..8567110
+
Mm9::chr5:8567113..8567123,+p@chr5:8567113..8567123
+
Mm9::chr5:8606564..8606568,+p@chr5:8606564..8606568
+
Mm9::chr9:42914037..42914109,-p1@Arhgef12


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0005083small GTPase regulator activity0.00509899699284794
GO:0030695GTPase regulator activity0.00821737696392652
GO:0007097nuclear migration0.00821737696392652
GO:0040023establishment of nucleus localization0.00986004192010371
GO:0051647nucleus localization0.00986004192010371
GO:0051656establishment of organelle localization0.027715412429569
GO:0007242intracellular signaling cascade0.027715412429569
GO:0051640organelle localization0.027715412429569
GO:0019992diacylglycerol binding0.0403401200135352
GO:0005089Rho guanyl-nucleotide exchange factor activity0.0403401200135352
GO:0035023regulation of Rho protein signal transduction0.0403401200135352
GO:0005088Ras guanyl-nucleotide exchange factor activity0.0403401200135352
GO:0000226microtubule cytoskeleton organization and biogenesis0.0403871732472332
GO:0007266Rho protein signal transduction0.0468573864306494



Relative expression of the co-expression cluster over median <br>Analyst:



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Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>


Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}