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MCL coexpression mm9:350: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0016324;apical plasma membrane;0.0123051114716402;65962,208431!GO:0045177;apical part of cell;0.0152455547678518;65962,208431!GO:0001757;somite specification;0.0384173101686729;17285!GO:0009898;internal side of plasma membrane;0.0384173101686729;208431!GO:0005545;phosphatidylinositol binding;0.0384173101686729;17207!GO:0031941;filamentous actin;0.0384173101686729;208431!GO:0007379;segment specification;0.0384173101686729;17285!GO:0009925;basal plasma membrane;0.0384173101686729;208431!GO:0045178;basal part of cell;0.0384173101686729;208431!GO:0030864;cortical actin cytoskeleton;0.0422474663285222;208431!
|gostat_on_MCL_coexpression=GO:0016324;apical plasma membrane;0.0123051114716402;65962,208431!GO:0045177;apical part of cell;0.0152455547678518;65962,208431!GO:0001757;somite specification;0.0384173101686729;17285!GO:0009898;internal side of plasma membrane;0.0384173101686729;208431!GO:0005545;phosphatidylinositol binding;0.0384173101686729;17207!GO:0031941;filamentous actin;0.0384173101686729;208431!GO:0007379;segment specification;0.0384173101686729;17285!GO:0009925;basal plasma membrane;0.0384173101686729;208431!GO:0045178;basal part of cell;0.0384173101686729;208431!GO:0030864;cortical actin cytoskeleton;0.0422474663285222;208431!
}}
}}

Revision as of 12:40, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:101755013..101755094,-p@chr11:101755013..101755094
-
Mm9::chr11:30143050..30143055,-p@chr11:30143050..30143055
-
Mm9::chr17:10423983..10423987,-p@chr17:10423983..10423987
-
Mm9::chr17:24781878..24781921,-p2@Slc9a3r2
Mm9::chr2:179997285..179997300,-p@chr2:179997285..179997300
-
Mm9::chr5:136019136..136019144,-p@chr5:136019136..136019144
-
Mm9::chr6:91671712..91671734,+p@chr6:91671712..91671734
+
Mm9::chr7:80885163..80885219,+p2@Fam174b
Mm9::chr8:12926192..12926201,+p14@Mcf2l
Mm9::chr8:12926204..12926218,+p11@Mcf2l
Mm9::chr8:12926268..12926291,+p2@Mcf2l
Mm9::chr8:12926299..12926317,+p4@Mcf2l
Mm9::chr9:48122532..48122588,+p@chr9:48122532..48122588
+
Mm9::chr9:60713920..60713971,+p@chr9:60713920..60713971
+
Mm9::chr9:79809768..79809783,-p11@Filip1
Mm9::chr9:79809790..79809808,-p7@Filip1
Mm9::chrX:18038392..18038406,-p3@4930578C19Rik
Mm9::chrX:18038411..18038449,-p1@4930578C19Rik
Mm9::chrX:18038511..18038528,-p2@4930578C19Rik
Mm9::chrX:6154428..6154445,+p6@Shroom4
Mm9::chrX:7258341..7258355,-p3@Magix
Mm9::chrX:7258356..7258382,-p2@Magix


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0016324apical plasma membrane0.0123051114716402
GO:0045177apical part of cell0.0152455547678518
GO:0001757somite specification0.0384173101686729
GO:0009898internal side of plasma membrane0.0384173101686729
GO:0005545phosphatidylinositol binding0.0384173101686729
GO:0031941filamentous actin0.0384173101686729
GO:0007379segment specification0.0384173101686729
GO:0009925basal plasma membrane0.0384173101686729
GO:0045178basal part of cell0.0384173101686729
GO:0030864cortical actin cytoskeleton0.0422474663285222



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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