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MCL coexpression mm9:399: Difference between revisions

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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0008270;zinc ion binding;0.0109632657125492;21408,232966,22718,237758,22775,22696!GO:0044424;intracellular part;0.0109632657125492;21408,20822,22718,237758,12419,22775,22696,232966,16579,68519!GO:0046914;transition metal ion binding;0.0109632657125492;21408,232966,22718,237758,22775,22696!GO:0046587;positive regulation of calcium-dependent cell-cell adhesion;0.0109632657125492;16579!GO:0016939;kinesin II complex;0.0109632657125492;16579!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0109632657125492;16579!GO:0005622;intracellular;0.0109632657125492;21408,20822,22718,237758,12419,22775,22696,232966,16579,68519!GO:0043229;intracellular organelle;0.0170505484654286;21408,22718,237758,12419,22775,22696,232966,16579,68519!GO:0043226;organelle;0.0170505484654286;21408,22718,237758,12419,22775,22696,232966,16579,68519!GO:0005634;nucleus;0.0174100124011624;21408,232966,22718,237758,12419,22775,22696!GO:0043169;cation binding;0.0339239644478828;21408,232966,22718,237758,22775,22696!GO:0010369;chromocenter;0.0344723512049932;12419!GO:0019894;kinesin binding;0.04006297551357;16579!GO:0046872;metal ion binding;0.04006297551357;21408,232966,22718,237758,22775,22696!GO:0022407;regulation of cell-cell adhesion;0.04006297551357;16579!GO:0043167;ion binding;0.04006297551357;21408,232966,22718,237758,22775,22696!GO:0016339;calcium-dependent cell-cell adhesion;0.040515738197994;16579!GO:0045785;positive regulation of cell adhesion;0.0458952073181271;16579!
|gostat_on_MCL_coexpression=GO:0008270;zinc ion binding;0.0109632657125492;21408,232966,22718,237758,22775,22696!GO:0044424;intracellular part;0.0109632657125492;21408,20822,22718,237758,12419,22775,22696,232966,16579,68519!GO:0046914;transition metal ion binding;0.0109632657125492;21408,232966,22718,237758,22775,22696!GO:0046587;positive regulation of calcium-dependent cell-cell adhesion;0.0109632657125492;16579!GO:0016939;kinesin II complex;0.0109632657125492;16579!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0109632657125492;16579!GO:0005622;intracellular;0.0109632657125492;21408,20822,22718,237758,12419,22775,22696,232966,16579,68519!GO:0043229;intracellular organelle;0.0170505484654286;21408,22718,237758,12419,22775,22696,232966,16579,68519!GO:0043226;organelle;0.0170505484654286;21408,22718,237758,12419,22775,22696,232966,16579,68519!GO:0005634;nucleus;0.0174100124011624;21408,232966,22718,237758,12419,22775,22696!GO:0043169;cation binding;0.0339239644478828;21408,232966,22718,237758,22775,22696!GO:0010369;chromocenter;0.0344723512049932;12419!GO:0019894;kinesin binding;0.04006297551357;16579!GO:0046872;metal ion binding;0.04006297551357;21408,232966,22718,237758,22775,22696!GO:0022407;regulation of cell-cell adhesion;0.04006297551357;16579!GO:0043167;ion binding;0.04006297551357;21408,232966,22718,237758,22775,22696!GO:0016339;calcium-dependent cell-cell adhesion;0.040515738197994;16579!GO:0045785;positive regulation of cell adhesion;0.0458952073181271;16579!
}}
}}

Revision as of 12:41, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:50700965..50701027,-p1@Zfp454
Mm9::chr11:50872733..50872809,+p1@Zfp354a
Mm9::chr12:109661279..109661346,+p1@Eml1
Mm9::chr15:103045716..103045792,-p2@Cbx5
Mm9::chr15:12754596..12754638,+p1@Drosha
Mm9::chr16:38550224..38550250,-p2@Poglut1
Mm9::chr17:32967140..32967197,-p1@Zfp799
Mm9::chr1:145624103..145624169,-p1@Trove2
Mm9::chr1:165709942..165709996,+p4@Kifap3
Mm9::chr2:73730355..73730425,-p@chr2:73730355..73730425
-
Mm9::chr4:61869460..61869521,-p1@Zfp37
Mm9::chr7:11080671..11080750,-p1@Zik1
Mm9::chr7:24960051..24960080,+p1@Zfp114
Mm9::chr7:28516417..28516460,+p1@Zfp60
Mm9::chr7:69354369..69354380,-p2@uc009hfe.1
p2@uc012fml.1
Mm9::chr7:69354385..69354432,-p1@uc009hfe.1
p1@uc012fml.1
Mm9::chrX:92853718..92853729,-p3@Zc4h2
Mm9::chrX:92853731..92853751,-p2@Zc4h2
Mm9::chrX:92853755..92853786,-p1@Zc4h2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0008270zinc ion binding0.0109632657125492
GO:0044424intracellular part0.0109632657125492
GO:0046914transition metal ion binding0.0109632657125492
GO:0046587positive regulation of calcium-dependent cell-cell adhesion0.0109632657125492
GO:0016939kinesin II complex0.0109632657125492
GO:0046586regulation of calcium-dependent cell-cell adhesion0.0109632657125492
GO:0005622intracellular0.0109632657125492
GO:0043229intracellular organelle0.0170505484654286
GO:0043226organelle0.0170505484654286
GO:0005634nucleus0.0174100124011624
GO:0043169cation binding0.0339239644478828
GO:0010369chromocenter0.0344723512049932
GO:0019894kinesin binding0.04006297551357
GO:0046872metal ion binding0.04006297551357
GO:0022407regulation of cell-cell adhesion0.04006297551357
GO:0043167ion binding0.04006297551357
GO:0016339calcium-dependent cell-cell adhesion0.040515738197994
GO:0045785positive regulation of cell adhesion0.0458952073181271



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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