Personal tools

MCL coexpression mm9:1151: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=-0.00402210031680106,0.197416534020633,0.145939647712715,0.23842630280287,0.244208368629009,0.0585755965057718,0.0844535149956441,-0.0241133807612201,-0.0331587023159027,-0.0220161973643823,-0.0111718051664013,-0.0159348328246708,-0.055017475640381,-0.0405675848744677,0.0196420309817162,0.00946398662749786,0.0107930903947329,-0.0155829749131888,-0.0320101025266408,-0.055017475640381,0.0305833126532503,-0.000467128975247439,0.00347673722512991,0.272804026557629,0.255079921808329,0.142319198269031,0.0808241658049277,0.213865845560042,0.314025185340673,0.199733959238072,0.0647678214257914,-0.0245137749957099,-0.00525603318403873,-0.055017475640381,0.0330477354866964,0.0637266628031246,0.0291819355586863,-0.011634897287312,0.00336721030421704,0.0035581876317848,-0.055017475640381,0.0912903119596353,-0.055017475640381,-0.00445888801024843,-0.000205246599426557,0.00964319251644957,-0.055017475640381,0.0123565599646006,-0.00903252198745359,0.0159473536155764,0.0205378157497751,-0.055017475640381,-0.0297232654075304,-0.0211774378555822,-0.0231196187574449,0.0193435827295334,0.00704556060723371,0.0240802510042799,-0.000283816104814958,0.0336320691003263,0.0110713398359284,0.00647302215153807,0.00838601073696857,0.0261491543612317,0.0442803032971677,-0.000162096330874544,-0.015234718657554,-0.0074497020284195,0.010316634084941,0.030526066949727,0.0108878275529129,-0.0269803821164709,0.021445044238806,-0.0126390406243466,0.0172329436244943,0.009708145369832,0.0171917250684924,0.0188215896536376,0.0250448121341886,0.0005966476948051,0.0307947154335838,-0.0107290631654542,0.0297449190964324,0.0557328689922013,0.0179388928370838,0.0253382400078853,0.0410184617612491,-0.0141594043240832,0.0185232190990797,-0.00375571531410934,0.0333044303450381,0.243468701078974,0.171255745517193,0.754284725660213,0.946272427604715,0.441926594460536,0.0906010183565314,0.029377604777289,0.0290691006230593,0.0282434243416343,0.00304211477676843,-0.055017475640381,-0.055017475640381,-0.055017475640381,0.0244179789512976,0.0232992702044009,0.0135980260511296,0.18186736457969,-0.0148402570708816,0.0041412415523508,-0.000616097279078214,0.110656329880023,0.0639660873633569,0.0588807518548688,0.0717612041965229,0.00460857011229602,0.306166369663666,0.100110916768275,-0.055017475640381,0.0290036767085393,0.0307547994388034,0.0252218467694047,-0.055017475640381,2.53318415373859e-05,0.0171853527975888,0.642720516678732,0.0041615900110701,-0.055017475640381,0.00986613981016523,0.00679406931210821,0.0498333611148137,-0.0174271976849919,-0.0190364268041628,-0.0267628355637953,0.0384281897473591,0.0045927854390616,0.0139168935760182,0.0241341477354586,0.008172846898472,0.124604124871585,0.00333753700715411,-0.014558526254289,0.023014056690494,-0.00162293976616049,-0.0121869960401309,0.0202174929106398,-0.0110675005204326,0.110660969767066,-0.0327773467579406,-0.0137263297155057,-0.021957509912748,-0.023663706538251,0.0176176598533234,0.0260855940338225,0.010263036696222,-0.0074216084363722,-0.0220154826774993,-0.0292567006017829,0.00760459882021817,0.00076125612414947,0.02359975641448,0.0150251980896499,0.00561486619690504,0.00821358406377972,0.015436427717485,0.0195305221127227,-0.00978620248776071,-0.00965993244568113,0.0159484938915221,0.058317688953364,0.0190259066632068,0.0277814179096949,0.0202028155248015,-0.0340260760766161,-0.0246718609514429,-0.0111186300083527,0.943251460153711,0.547872505278766,0.0234520232584055,0.0516042897036425,0.155472278132767,0.537251129215414,0.627442367949567,0.571093899665522,0.750288008190142,0.847657248510227,0.748673638592054,0.582999129924599,0.540187413410042,0.751495464612796,0.93291661963836,0.750888486544804,-0.00787330346858743,0.0843890032049472,-0.00819129214830458,0.163697577284163,0.134875653319821,0.0799510952786589,0.11587111986069,0.120490731831068,0.280474200929985,0.237237521169081,0.582665605951581,0.0562244591122221,0.13465758742323,0.19807268333882,0.0818754691772403,0.141676333106383,0.2257572037678,0.204597858210379,0.375833594522141,0.510803745625833,1.3051227468545,0.495841984110971,0.482472614619685,0.596866400994038,0.438120089722974,0.530952684271263,0.044235576804103,-0.0442515741058984,0.0029911571211661,0.0320362229736843,0.0280740344165466,-0.0370909989330808,-0.00833462658708023,0.0405317400956618,-0.00195673229822124,-0.010997893306632,-0.00723448514026994,0.0489203464954006,-0.00101996463859623,0.0675297140939423,0.00202715848045571,-0.00112582819860457,-0.00538884655101843,0.0285431832765725,0.00653300204633843,0.0341494198725064,0.00519636653933184,0.0334932976404359,0.0259764173860211,0.0325963405132891,-0.00186115417372643,0.0134607440640842,-0.0154837268880237,-0.0080389679206487,0.0028690288194582,0.00892720338814347,-0.0188756682960189,0.00414566049349329,0.00521416065883057,-0.00992701993565669,0.0100330768096143,-0.00463084766211601,-0.055017475640381,0.052628878303414,0.0348955732596403,0.07619329852496,0.0172983803927355,0.0354229334705069,0.194142301103921,0.019920284385911,0.0797006783981764,0.037866336025514,0.0600072094061529,0.0144262385306344,0.00665640619274818,0.00475287078327966,0.0271360609299306,0.0239733206430048,-0.026054782146662,0.0663655756277819,0.0344678657883856,0.00173066924947703,0.023008591281699,0.0133237334153288,0.0395677168397723,-0.0206138225587353,0.0237302676816733,0.0104595775780061,0.0398674129085563,-0.00484330290486133,0.667356157213637,-0.00102264981088169,0.00357686136299233,0.0122515060928107,0.0683022207007554,0.0330734564033144,0.0612656081892596,0.0516136231840687,0.00130212806097566,-0.0243954685926221,-0.0196840378759028,0.203497099247312,-0.0309251967550299,0.0385941269159319,0.11895634489541,0.0897778670241626,0.248472952620525,0.15345081217903,0.121576322271142,0.147461028547397,0.175744967540336,-0.055017475640381,0.0281094928382574,-0.00309344735242238,-0.0176163241615674,0.007745707075868,0.0398399709923212,0.0267630042241159,0.0490555935916307,0.0364379125029373,0.0154261868131101,0.0605299110783179,0.0478800983672068,-0.0246280366348659,0.00478250213473984,0.00366733369790036,0.000606111114689482,0.0004633714544345,-0.00748865222607334,-0.0171402433360339,-0.0207086736766963,0.0137107035498929,-0.0126880205696457,-0.00275840996688498,-0.0288246157512688,-0.00820499897303741,0.0133690419030859,-0.0296605836410269,-0.0233511882306706,-0.0359927252084211,-0.0453889130900966,0.0472393955303758,-0.00328225812386751,0.000961731249756128,0.0307013253885634,0.08815152085289,-0.00812056192850621,-0.0145248559894058,0.0374290878441319,0.0242556917711979,-0.0226430222891376,0.00209823990671914,0.00898842298826386,-0.0319511618886356,0.031383116385131,0.00313946757007006,0.0228752280538879,0.0177830109960307,-0.011133257006461,0.103017576875272,-0.0129425051540436,0.0381861284354739,0.1949602711771,0.16246295175349,0.125003115109361,0.150249044291294,0.106613177900033,0.0607945519491895,0.122284911870891,0.116792052302461,0.0674492016376247,0.0930716146624393,0.140927373027472,0.0978952063560241,0.162754879153928,0.14685711154058,0.213076916468395,0.144008885348137,0.139646144853711,0.176084612359915,0.15900994662607,0.100681739048646,0.169228998005651,0.185102640100923,0.141697768392879,0.173917248933443,0.117411875084445,0.163321917340429,0.0743430985134878,0.075034172213544,0.0882875089396692,-0.00473180869602159,0.153256898269754,0.101704362980899,0.0282587820986958,-0.0034068602540349,0.00138066190629586
|coexpression_dpi_cluster_scores_mean=-0.00402210031680106,0.197416534020633,0.145939647712715,0.23842630280287,0.244208368629009,0.0585755965057718,0.0844535149956441,-0.0241133807612201,-0.0331587023159027,-0.0220161973643823,-0.0111718051664013,-0.0159348328246708,-0.055017475640381,-0.0405675848744677,0.0196420309817162,0.00946398662749786,0.0107930903947329,-0.0155829749131888,-0.0320101025266408,-0.055017475640381,0.0305833126532503,-0.000467128975247439,0.00347673722512991,0.272804026557629,0.255079921808329,0.142319198269031,0.0808241658049277,0.213865845560042,0.314025185340673,0.199733959238072,0.0647678214257914,-0.0245137749957099,-0.00525603318403873,-0.055017475640381,0.0330477354866964,0.0637266628031246,0.0291819355586863,-0.011634897287312,0.00336721030421704,0.0035581876317848,-0.055017475640381,0.0912903119596353,-0.055017475640381,-0.00445888801024843,-0.000205246599426557,0.00964319251644957,-0.055017475640381,0.0123565599646006,-0.00903252198745359,0.0159473536155764,0.0205378157497751,-0.055017475640381,-0.0297232654075304,-0.0211774378555822,-0.0231196187574449,0.0193435827295334,0.00704556060723371,0.0240802510042799,-0.000283816104814958,0.0336320691003263,0.0110713398359284,0.00647302215153807,0.00838601073696857,0.0261491543612317,0.0442803032971677,-0.000162096330874544,-0.015234718657554,-0.0074497020284195,0.010316634084941,0.030526066949727,0.0108878275529129,-0.0269803821164709,0.021445044238806,-0.0126390406243466,0.0172329436244943,0.009708145369832,0.0171917250684924,0.0188215896536376,0.0250448121341886,0.0005966476948051,0.0307947154335838,-0.0107290631654542,0.0297449190964324,0.0557328689922013,0.0179388928370838,0.0253382400078853,0.0410184617612491,-0.0141594043240832,0.0185232190990797,-0.00375571531410934,0.0333044303450381,0.243468701078974,0.171255745517193,0.754284725660213,0.946272427604715,0.441926594460536,0.0906010183565314,0.029377604777289,0.0290691006230593,0.0282434243416343,0.00304211477676843,-0.055017475640381,-0.055017475640381,-0.055017475640381,0.0244179789512976,0.0232992702044009,0.0135980260511296,0.18186736457969,-0.0148402570708816,0.0041412415523508,-0.000616097279078214,0.110656329880023,0.0639660873633569,0.0588807518548688,0.0717612041965229,0.00460857011229602,0.306166369663666,0.100110916768275,-0.055017475640381,0.0290036767085393,0.0307547994388034,0.0252218467694047,-0.055017475640381,2.53318415373859e-05,0.0171853527975888,0.642720516678732,0.0041615900110701,-0.055017475640381,0.00986613981016523,0.00679406931210821,0.0498333611148137,-0.0174271976849919,-0.0190364268041628,-0.0267628355637953,0.0384281897473591,0.0045927854390616,0.0139168935760182,0.0241341477354586,0.008172846898472,0.124604124871585,0.00333753700715411,-0.014558526254289,0.023014056690494,-0.00162293976616049,-0.0121869960401309,0.0202174929106398,-0.0110675005204326,0.110660969767066,-0.0327773467579406,-0.0137263297155057,-0.021957509912748,-0.023663706538251,0.0176176598533234,0.0260855940338225,0.010263036696222,-0.0074216084363722,-0.0220154826774993,-0.0292567006017829,0.00760459882021817,0.00076125612414947,0.02359975641448,0.0150251980896499,0.00561486619690504,0.00821358406377972,0.015436427717485,0.0195305221127227,-0.00978620248776071,-0.00965993244568113,0.0159484938915221,0.058317688953364,0.0190259066632068,0.0277814179096949,0.0202028155248015,-0.0340260760766161,-0.0246718609514429,-0.0111186300083527,0.943251460153711,0.547872505278766,0.0234520232584055,0.0516042897036425,0.155472278132767,0.537251129215414,0.627442367949567,0.571093899665522,0.750288008190142,0.847657248510227,0.748673638592054,0.582999129924599,0.540187413410042,0.751495464612796,0.93291661963836,0.750888486544804,-0.00787330346858743,0.0843890032049472,-0.00819129214830458,0.163697577284163,0.134875653319821,0.0799510952786589,0.11587111986069,0.120490731831068,0.280474200929985,0.237237521169081,0.582665605951581,0.0562244591122221,0.13465758742323,0.19807268333882,0.0818754691772403,0.141676333106383,0.2257572037678,0.204597858210379,0.375833594522141,0.510803745625833,1.3051227468545,0.495841984110971,0.482472614619685,0.596866400994038,0.438120089722974,0.530952684271263,0.044235576804103,-0.0442515741058984,0.0029911571211661,0.0320362229736843,0.0280740344165466,-0.0370909989330808,-0.00833462658708023,0.0405317400956618,-0.00195673229822124,-0.010997893306632,-0.00723448514026994,0.0489203464954006,-0.00101996463859623,0.0675297140939423,0.00202715848045571,-0.00112582819860457,-0.00538884655101843,0.0285431832765725,0.00653300204633843,0.0341494198725064,0.00519636653933184,0.0334932976404359,0.0259764173860211,0.0325963405132891,-0.00186115417372643,0.0134607440640842,-0.0154837268880237,-0.0080389679206487,0.0028690288194582,0.00892720338814347,-0.0188756682960189,0.00414566049349329,0.00521416065883057,-0.00992701993565669,0.0100330768096143,-0.00463084766211601,-0.055017475640381,0.052628878303414,0.0348955732596403,0.07619329852496,0.0172983803927355,0.0354229334705069,0.194142301103921,0.019920284385911,0.0797006783981764,0.037866336025514,0.0600072094061529,0.0144262385306344,0.00665640619274818,0.00475287078327966,0.0271360609299306,0.0239733206430048,-0.026054782146662,0.0663655756277819,0.0344678657883856,0.00173066924947703,0.023008591281699,0.0133237334153288,0.0395677168397723,-0.0206138225587353,0.0237302676816733,0.0104595775780061,0.0398674129085563,-0.00484330290486133,0.667356157213637,-0.00102264981088169,0.00357686136299233,0.0122515060928107,0.0683022207007554,0.0330734564033144,0.0612656081892596,0.0516136231840687,0.00130212806097566,-0.0243954685926221,-0.0196840378759028,0.203497099247312,-0.0309251967550299,0.0385941269159319,0.11895634489541,0.0897778670241626,0.248472952620525,0.15345081217903,0.121576322271142,0.147461028547397,0.175744967540336,-0.055017475640381,0.0281094928382574,-0.00309344735242238,-0.0176163241615674,0.007745707075868,0.0398399709923212,0.0267630042241159,0.0490555935916307,0.0364379125029373,0.0154261868131101,0.0605299110783179,0.0478800983672068,-0.0246280366348659,0.00478250213473984,0.00366733369790036,0.000606111114689482,0.0004633714544345,-0.00748865222607334,-0.0171402433360339,-0.0207086736766963,0.0137107035498929,-0.0126880205696457,-0.00275840996688498,-0.0288246157512688,-0.00820499897303741,0.0133690419030859,-0.0296605836410269,-0.0233511882306706,-0.0359927252084211,-0.0453889130900966,0.0472393955303758,-0.00328225812386751,0.000961731249756128,0.0307013253885634,0.08815152085289,-0.00812056192850621,-0.0145248559894058,0.0374290878441319,0.0242556917711979,-0.0226430222891376,0.00209823990671914,0.00898842298826386,-0.0319511618886356,0.031383116385131,0.00313946757007006,0.0228752280538879,0.0177830109960307,-0.011133257006461,0.103017576875272,-0.0129425051540436,0.0381861284354739,0.1949602711771,0.16246295175349,0.125003115109361,0.150249044291294,0.106613177900033,0.0607945519491895,0.122284911870891,0.116792052302461,0.0674492016376247,0.0930716146624393,0.140927373027472,0.0978952063560241,0.162754879153928,0.14685711154058,0.213076916468395,0.144008885348137,0.139646144853711,0.176084612359915,0.15900994662607,0.100681739048646,0.169228998005651,0.185102640100923,0.141697768392879,0.173917248933443,0.117411875084445,0.163321917340429,0.0743430985134878,0.075034172213544,0.0882875089396692,-0.00473180869602159,0.153256898269754,0.101704362980899,0.0282587820986958,-0.0034068602540349,0.00138066190629586
|coexpression_dpi_cluster_scores_median=0,0.130004032382152,0.162862766291676,0.114765798731257,0.176350522035494,0.0673979504369913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0354470656487682,0,0,0.21483582178082,0.164001280677683,0.14488002220628,0,0.164350266626518,0.245535782973247,0.0976147801771522,0.0347867156739474,0,0,0,0,0.0667859388724756,0.0143995398017153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173113167069536,0.75378981341636,1.10366607615072,0.66126498704669,0.178827520732859,0,0,0,0,0,0,0,0,0,0,0.127930999153497,0,0,0,0.115432590314795,0.0901223798974778,0.00878195384433192,0.0482820047261801,0,0.29858671568966,0,0,0,0,0,0,0,0,0.727766473720414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.841830936714898,0.493542327080876,0,0,0.141951942539884,0.530280266905393,0.627277963398845,0.533653629809452,0.759312001604286,0.735453823119425,0.648632943514095,0.554662859595804,0.496143352963147,0.805699028740935,0.993950027277956,0.746653600481797,0,0.046982063026719,0,0.0961988031059389,0.0247983404632272,0.0294389011296462,0,0.00760567582008759,0.102749283957565,0.095794817833365,0.546002595933088,0,0.0779341159210384,0.0880872011895838,0.0802151268900158,0.093833775061694,0.246468434036162,0.332596908054618,0.308987759445596,0.5046735274852,1.22568402776019,0.586227518241996,0.458218615059025,0.605407037907505,0.386530944887019,0.641186930020927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0750375819757342,0,0,0.115617812678898,0,0.111499501711279,0,0,0,0,0,0,0,0,0.0190925374283405,0,0,0,0,0,0,0,0,0,0,0.774894471587673,0,0,0,0,0,0,0,0,0,0,0.238884880727098,0,0.013403073050918,0.121893240712599,0.0824580172145032,0.272642165925968,0.147550511820338,0.124052030742824,0.100975358632432,0.0529304404135566,0,0,0,0,0,0,0,0,0.0483227121426037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119892478539632,0,0.0263144149224816,0.159715578577694,0.209006745960922,0.0686875518840054,0.17765030293269,0.098117166361508,0,0.138165606837579,0.0990244263857601,0.0690411384905589,0,0.165403796547116,0.0766073954291401,0.0976724126560019,0.112067779638927,0.226790206858766,0.186524927179613,0.169342968499384,0.169520295692521,0.138756502969784,0.0352754493378881,0.189990830607665,0.18359421108913,0.18842684556126,0.193442483447008,0.0924644954689594,0.17392086126324,0.0149217400603656,0.0625582350728301,0.0766064454112358,0,0.091291089277545,0.0845301845292944,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 12:52, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr16:56712938..56712951,-p4@Tfg
Mm9::chr19:43868941..43868945,+p@chr19:43868941..43868945
+
Mm9::chr3:137753194..137753207,-p@chr3:137753194..137753207
-
Mm9::chr3:88944135..88944152,+p@chr3:88944135..88944152
+
Mm9::chr5:138334851..138334869,-p@chr5:138334851..138334869
-
Mm9::chr6:119349137..119349139,-p@chr6:119349137..119349139
-
Mm9::chr7:127328022..127328033,+p@chr7:127328022..127328033
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:1151&oldid=2150437"