Personal tools

MCL coexpression mm9:3436: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0.285780930314984,-0.0419533885194283,-0.17577547267233,0.267582944468901,0.240509384699952,0.0338709665034293,0.0506252216840762,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.324722936623398,-0.317124561503014,-0.366344906155048,-0.345142341703731,-0.366344906155048,-0.366344906155048,0.0218090802781975,-0.352640688456769,-0.366344906155048,0.0925260750283388,0.0642752312224202,-0.102961393348815,-0.0453267479029029,-0.0419169402149191,0.380613810937594,0.224475352471161,-0.0676196142865784,-0.366344906155048,-0.366344906155048,-0.366344906155048,0.195775664269686,0.189623013090542,0.204550498192842,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,0.138481954462727,0.0966410072902604,0.0388026444569098,-0.0511244930473904,-0.245256837658766,-0.0462135302877569,-0.0583612991322075,-0.0628157540120321,-0.170252421195242,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.15370254856267,0.0353170074808373,-0.115891619782979,-0.339671975136885,-0.304876598430719,-0.366344906155048,-0.0408778954707786,-0.146779537817998,-0.31256057816688,-0.366344906155048,-0.366344906155048,0.0472561709290578,0.189824652449478,-0.339063673263897,-0.317117629176698,-0.366344906155048,-0.207325871702079,-0.274691683745263,-0.366344906155048,-0.353095133791619,-0.366344906155048,-0.366344906155048,-0.3489486714519,-0.327562779392272,-0.332455263919016,-0.303001362482418,-0.366344906155048,-0.278265263461733,-0.223186317490852,-0.272153433265905,-0.29928017958723,-0.227678766220393,-0.302044451809956,-0.366344906155048,-0.336763718626018,-0.0211297276357217,0.447620203495924,0.230495621585338,0.350211496445585,0.527151797453644,0.457180081739804,0.568844848089705,0.00992379593376227,-0.0559641855321632,0.0134703588463032,0.163994161682649,-0.000137448558381432,0.182511521483469,0.123314148404989,-0.13011030514555,-0.050629185779886,-0.0832810187669761,0.309933513302447,-0.216644040595183,-0.163983102080885,-0.0904471368405464,0.0141961340837266,0.0127496175397421,-0.116512541312975,0.003910804575905,-0.160619924425032,0.157629170023057,0.0801490641115087,0.314446811339373,0.583695757051301,0.555216279816285,0.510356478632999,0.22340184890253,-0.16829482380563,-0.235093531793733,0.232309769782486,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.252314265613804,-0.257272410785578,-0.366344906155048,-0.28992961768291,-0.333381159399032,-0.221831147548297,-0.325662828476741,0.187378676508195,0.338453804595611,0.117553506540378,0.200491992118174,-0.293797431648587,-0.127997597498739,-0.0510328012461913,0.167668745890586,0.0571195585390851,0.0573318341844178,0.0571131801175806,0.162045821499779,-0.157444371177626,-0.197378683907565,-0.0656824674630797,0.0958608683833012,0.0930448802150037,0.253629346465102,0.223441272177098,0.0283564334934849,-0.366344906155048,-0.366344906155048,-0.366344906155048,0.274279487419251,0.2793668717614,0.259524416357256,0.36579988399495,0.313749111885359,0.271236914310136,0.382532296877232,0.318403850568107,0.425635645267162,0.386901935493112,0.452368512928338,0.621702753353933,0.60149739194463,0.577456275671014,0.634079500981868,-0.202422337017732,-0.182016154505857,0.229892596631804,-0.119671630353169,-0.0136216284988887,-0.032185442514576,0.0568292920908742,0.0268184064502996,0.0691335395966655,0.10122910620748,0.209102682562788,0.0940740534579376,0.125562671947235,0.200981658067954,0.166230717599407,0.166400029740351,0.238412207410726,0.276154518096368,-0.126258153291669,-0.0632341673626864,-0.257083811340203,-0.0436296465272261,-0.0428966146921569,-0.0280097709011259,0.136064136566547,0.342495535744219,0.346929737070308,0.395652376232375,0.579468108663749,-0.025788629826417,0.0993968230513183,0.0161314427069259,0.189353533234959,0.294174771931241,0.351553647030672,0.269622526496391,0.195008785622383,0.608441788083549,0.568891389771941,0.71680714383068,0.554170162755645,0.425841174981022,0.446361623283093,0.848837929527323,0.291430046052257,-0.0551882731353295,-0.0347445663066107,0.0721540786869125,0.117733413629149,0.115862889601797,0.225533636683268,0.12920613721679,0.229107201955785,0.173223065689548,0.221383821709214,0.294910815823723,0.277405880951442,0.287517346459675,-0.366344906155048,-0.366344906155048,-0.151002871188682,-0.119534425702818,-0.236921264394541,-0.230397041214985,0.0226086717773915,1.06613316126366,-0.326647050841037,-0.230165709934339,-0.366344906155048,-0.366344906155048,-0.292245190908466,-0.330260719083844,-0.366344906155048,-0.329228736308417,-0.282014022351537,-0.210824780211116,-0.0469159042597229,0.183750639902462,0.165169853653211,0.103110658228274,0.569028130429403,0.0795410557555484,0.0781912622892079,0.112930170228435,0.107500929656586,0.0707696728297572,0.0248860834019468,0.314134029387092,0.350745960066956,0.256930438044715,0.30788642421009,0.453980986771869,-0.205261495230763,-0.145387180699749,-0.0382018145202634,-0.0565027646456513,-0.0604013666565451,0.0525186483806102,0.00115669895390068,-0.0400562957258544,-0.151143917372558,-0.201704646536876,-0.049248232101296,0.51142217528144,0.0919222418579463,0.0844308155752369,0.000570144402630466,0.0324537852401242,0.192969693996816,-0.116030683201824,-0.306435664187729,-0.00771275978539087,-0.196954706825172,-0.233296484096564,-0.316596713097664,-0.241265851746653,-0.366344906155048,-0.366344906155048,-0.366344906155048,0.2357337694623,0.0124296992634243,-0.0144337554343479,0.0575989518990187,0.0675273123283672,0.11657532646559,0.269572249494698,0.350149039685725,0.253783390875745,0.216853284083799,0.291689470336773,-0.195504726659987,0.101204981854546,0.0785130084332064,0.0573979351675439,0.0426132551019586,0.0935719558297134,0.0704730106377252,0.0682922998735882,0.022325444873121,-0.123600522445681,0.28980909687378,-0.144078543805054,-0.226811624679767,-0.198578935295162,-0.272709130674031,-0.192312206046415,-0.191672535808279,-0.252075459570125,-0.243632119151321,-0.221678752144663,-0.266677137941051,-0.307249692600993,-0.275180822369081,-0.283712120033343,-0.289421222244737,0.961018857693536,-0.115362493306663,-0.0642845438716024,0.0169160007202469,0.362883482121377,-0.100933271584696,-0.113531468317192,-0.113978190272186,-0.165317266204983,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.306153904598836,-0.290804515002148,-0.366344906155048,-0.291671357754963,-0.273378101202132,-0.2729489764623,-0.305943842096057,-0.147308363657456,-0.140826116084476,-0.0961895397699281,0.225564033975836,0.235740742964313,0.342319369253684,0.339026846094719,0.417383283131984,0.324097287860624,0.405370115737195,0.287411938792366,0.272565875983295,0.294429203729561,0.316759143485669,0.296185177064302,0.387022632246656,0.359411262843117,0.328828261013908,0.167013204505374,0.353986803797382,0.326689614443002,0.310479498294784,0.335676716101665,0.297762988447639,0.367991331180021,0.347269751711366,0.364777875522692,0.366584564012113,0.383907923313233,0.391358618927443,0.324895073218933,0.350029940115412,0.346463857054069,0.310991017440152,0.316161465356484,0.19614928838793,0.266993024173069,0.306141623609152,0.455296042809695,0.57726367305439,0.589588232618805
|coexpression_dpi_cluster_scores_mean=0.285780930314984,-0.0419533885194283,-0.17577547267233,0.267582944468901,0.240509384699952,0.0338709665034293,0.0506252216840762,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.324722936623398,-0.317124561503014,-0.366344906155048,-0.345142341703731,-0.366344906155048,-0.366344906155048,0.0218090802781975,-0.352640688456769,-0.366344906155048,0.0925260750283388,0.0642752312224202,-0.102961393348815,-0.0453267479029029,-0.0419169402149191,0.380613810937594,0.224475352471161,-0.0676196142865784,-0.366344906155048,-0.366344906155048,-0.366344906155048,0.195775664269686,0.189623013090542,0.204550498192842,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.366344906155048,0.138481954462727,0.0966410072902604,0.0388026444569098,-0.0511244930473904,-0.245256837658766,-0.0462135302877569,-0.0583612991322075,-0.0628157540120321,-0.170252421195242,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.15370254856267,0.0353170074808373,-0.115891619782979,-0.339671975136885,-0.304876598430719,-0.366344906155048,-0.0408778954707786,-0.146779537817998,-0.31256057816688,-0.366344906155048,-0.366344906155048,0.0472561709290578,0.189824652449478,-0.339063673263897,-0.317117629176698,-0.366344906155048,-0.207325871702079,-0.274691683745263,-0.366344906155048,-0.353095133791619,-0.366344906155048,-0.366344906155048,-0.3489486714519,-0.327562779392272,-0.332455263919016,-0.303001362482418,-0.366344906155048,-0.278265263461733,-0.223186317490852,-0.272153433265905,-0.29928017958723,-0.227678766220393,-0.302044451809956,-0.366344906155048,-0.336763718626018,-0.0211297276357217,0.447620203495924,0.230495621585338,0.350211496445585,0.527151797453644,0.457180081739804,0.568844848089705,0.00992379593376227,-0.0559641855321632,0.0134703588463032,0.163994161682649,-0.000137448558381432,0.182511521483469,0.123314148404989,-0.13011030514555,-0.050629185779886,-0.0832810187669761,0.309933513302447,-0.216644040595183,-0.163983102080885,-0.0904471368405464,0.0141961340837266,0.0127496175397421,-0.116512541312975,0.003910804575905,-0.160619924425032,0.157629170023057,0.0801490641115087,0.314446811339373,0.583695757051301,0.555216279816285,0.510356478632999,0.22340184890253,-0.16829482380563,-0.235093531793733,0.232309769782486,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.252314265613804,-0.257272410785578,-0.366344906155048,-0.28992961768291,-0.333381159399032,-0.221831147548297,-0.325662828476741,0.187378676508195,0.338453804595611,0.117553506540378,0.200491992118174,-0.293797431648587,-0.127997597498739,-0.0510328012461913,0.167668745890586,0.0571195585390851,0.0573318341844178,0.0571131801175806,0.162045821499779,-0.157444371177626,-0.197378683907565,-0.0656824674630797,0.0958608683833012,0.0930448802150037,0.253629346465102,0.223441272177098,0.0283564334934849,-0.366344906155048,-0.366344906155048,-0.366344906155048,0.274279487419251,0.2793668717614,0.259524416357256,0.36579988399495,0.313749111885359,0.271236914310136,0.382532296877232,0.318403850568107,0.425635645267162,0.386901935493112,0.452368512928338,0.621702753353933,0.60149739194463,0.577456275671014,0.634079500981868,-0.202422337017732,-0.182016154505857,0.229892596631804,-0.119671630353169,-0.0136216284988887,-0.032185442514576,0.0568292920908742,0.0268184064502996,0.0691335395966655,0.10122910620748,0.209102682562788,0.0940740534579376,0.125562671947235,0.200981658067954,0.166230717599407,0.166400029740351,0.238412207410726,0.276154518096368,-0.126258153291669,-0.0632341673626864,-0.257083811340203,-0.0436296465272261,-0.0428966146921569,-0.0280097709011259,0.136064136566547,0.342495535744219,0.346929737070308,0.395652376232375,0.579468108663749,-0.025788629826417,0.0993968230513183,0.0161314427069259,0.189353533234959,0.294174771931241,0.351553647030672,0.269622526496391,0.195008785622383,0.608441788083549,0.568891389771941,0.71680714383068,0.554170162755645,0.425841174981022,0.446361623283093,0.848837929527323,0.291430046052257,-0.0551882731353295,-0.0347445663066107,0.0721540786869125,0.117733413629149,0.115862889601797,0.225533636683268,0.12920613721679,0.229107201955785,0.173223065689548,0.221383821709214,0.294910815823723,0.277405880951442,0.287517346459675,-0.366344906155048,-0.366344906155048,-0.151002871188682,-0.119534425702818,-0.236921264394541,-0.230397041214985,0.0226086717773915,1.06613316126366,-0.326647050841037,-0.230165709934339,-0.366344906155048,-0.366344906155048,-0.292245190908466,-0.330260719083844,-0.366344906155048,-0.329228736308417,-0.282014022351537,-0.210824780211116,-0.0469159042597229,0.183750639902462,0.165169853653211,0.103110658228274,0.569028130429403,0.0795410557555484,0.0781912622892079,0.112930170228435,0.107500929656586,0.0707696728297572,0.0248860834019468,0.314134029387092,0.350745960066956,0.256930438044715,0.30788642421009,0.453980986771869,-0.205261495230763,-0.145387180699749,-0.0382018145202634,-0.0565027646456513,-0.0604013666565451,0.0525186483806102,0.00115669895390068,-0.0400562957258544,-0.151143917372558,-0.201704646536876,-0.049248232101296,0.51142217528144,0.0919222418579463,0.0844308155752369,0.000570144402630466,0.0324537852401242,0.192969693996816,-0.116030683201824,-0.306435664187729,-0.00771275978539087,-0.196954706825172,-0.233296484096564,-0.316596713097664,-0.241265851746653,-0.366344906155048,-0.366344906155048,-0.366344906155048,0.2357337694623,0.0124296992634243,-0.0144337554343479,0.0575989518990187,0.0675273123283672,0.11657532646559,0.269572249494698,0.350149039685725,0.253783390875745,0.216853284083799,0.291689470336773,-0.195504726659987,0.101204981854546,0.0785130084332064,0.0573979351675439,0.0426132551019586,0.0935719558297134,0.0704730106377252,0.0682922998735882,0.022325444873121,-0.123600522445681,0.28980909687378,-0.144078543805054,-0.226811624679767,-0.198578935295162,-0.272709130674031,-0.192312206046415,-0.191672535808279,-0.252075459570125,-0.243632119151321,-0.221678752144663,-0.266677137941051,-0.307249692600993,-0.275180822369081,-0.283712120033343,-0.289421222244737,0.961018857693536,-0.115362493306663,-0.0642845438716024,0.0169160007202469,0.362883482121377,-0.100933271584696,-0.113531468317192,-0.113978190272186,-0.165317266204983,-0.366344906155048,-0.366344906155048,-0.366344906155048,-0.306153904598836,-0.290804515002148,-0.366344906155048,-0.291671357754963,-0.273378101202132,-0.2729489764623,-0.305943842096057,-0.147308363657456,-0.140826116084476,-0.0961895397699281,0.225564033975836,0.235740742964313,0.342319369253684,0.339026846094719,0.417383283131984,0.324097287860624,0.405370115737195,0.287411938792366,0.272565875983295,0.294429203729561,0.316759143485669,0.296185177064302,0.387022632246656,0.359411262843117,0.328828261013908,0.167013204505374,0.353986803797382,0.326689614443002,0.310479498294784,0.335676716101665,0.297762988447639,0.367991331180021,0.347269751711366,0.364777875522692,0.366584564012113,0.383907923313233,0.391358618927443,0.324895073218933,0.350029940115412,0.346463857054069,0.310991017440152,0.316161465356484,0.19614928838793,0.266993024173069,0.306141623609152,0.455296042809695,0.57726367305439,0.589588232618805
|coexpression_dpi_cluster_scores_median=0.416918603328749,0,-0.0719048733411253,0.133550794952979,0.104445648694369,0,0,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,0,-0.0719048733411253,-0.0719048733411253,0,0,-0.0719048733411253,-0.0640753703675833,-0.0538459473036319,0.295481603084108,0,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,0.0382980483315161,0,0.0087826977317204,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,0.17246649716402,0.0759283635555142,0.0525145869334225,-0.0719048733411253,-0.0719048733411253,-0.0667357175221455,0,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,0.0375162056561811,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0507288130712105,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,0.00977054499131236,0.175684623865172,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0140974448623907,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,0,0.362799368010959,0.300996578981722,0.346248794914116,0.618172291630654,0.374027269396695,0.645210559902287,0,-0.0719048733411253,0,0.208322676288233,0,0,0,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,0.235089171901037,-0.0719048733411253,-0.0117957539301254,-0.0719048733411253,0,0.0182175065563525,-0.0719048733411253,0.0198244684693704,-0.0719048733411253,0.0240294765227886,0.041069097674612,0.203316745066182,0.657883762224194,0.490399677825555,0.462676604956309,0,-0.0719048733411253,0,0.0268969882678167,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,0,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,0,-0.0719048733411253,0.210616249152706,0.345947075036763,0,0.140635769567965,-0.0719048733411253,0,0,0.202672535969733,0.0285860945550467,0.0289059804913723,0.0663368292479928,0.181102009199648,-0.0719048733411253,0,0,0.0860734338295156,0.106546909924599,0.366045487544659,0.277312959978372,0.00692672149878214,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,0.278876889585636,0.309599427997643,0.1636862503227,0.484903056032517,0.225597644641095,0.0932804757635692,0.384502394243739,0.244714038727217,0.419705580726003,0.292923456500984,0.322110047859314,0.624658709866394,0.43229401954325,0.488551914221934,0.50996913159611,-0.0719048733411253,-0.0719048733411253,0.148422286109948,-0.0719048733411253,0,-0.0246514542026026,0.0276842464935287,0,0.0153006672338686,0.0681162016954135,0.0967484631560777,0,0,0.0735752529455727,0,0,0.0841218716135927,0.131515282725371,0,-0.0249228103144063,0,0,-0.0567849707353455,0,0.0260275321197688,0.203558719744474,0.179731799509172,0.322680921963794,0.526286426701411,-0.0048916644229897,0.11815650930956,0,0.0759940255025755,0.271678151421578,0.23312461347166,0.125483838189643,0.266134370628439,0.613286689775336,0.653438718684323,0.746460540704414,0.431104154266525,0.17304893082222,0.281392233261154,0.843845887271645,0.322200901546759,-0.0719048733411253,-0.00633823751809458,0.0214946944994194,0.13758084086528,0.150818106913251,0.313390642605927,0.128234238992726,0.217195750650627,0.203604289789903,0.182709380488964,0.321629939969347,0.272250512229694,0.290170547509098,-0.0719048733411253,-0.0719048733411253,0,0,-0.0719048733411253,-0.0237694033512196,0,1.0703599588946,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0142615551984076,0.113976202340542,0.145986284295254,0.120009529806724,0.625529720997599,0.0224896045242743,0,0,0,0.0760762456848167,0.0279236006007919,0.248366319599764,0.312984045933849,0.0473631462907237,0,0.235881046548246,-0.0719048733411253,-0.0719048733411253,0,-0.0719048733411253,-0.00100288777814937,0.0605909989320717,0,-0.0482640138364379,0,-0.0719048733411253,-0.0719048733411253,0.651307934445338,0.131279313500412,0.0787555564892377,0.0246407338292995,0.0459760072067892,0,-0.0719048733411253,-0.0719048733411253,0,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,0,0,0,0,0,0.0854688140471242,0.245931811657009,0.278304722943572,0.110940972891753,0,0.278862170692561,-0.0719048733411253,0.0890285086269784,0,0.0707668477344008,0.0278861042349795,0.0866760115008753,0.0952437198722397,0.0286065429109265,0.0107795167410202,-0.0719048733411253,0.198562007698653,0,-0.0719048733411253,0,-0.0719048733411253,-0.0719048733411253,0,-0.0719048733411253,-0.0120804546791814,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,1.02719711361933,-0.0719048733411253,-0.000233545086159082,0,0.365640594829978,-0.0719048733411253,0,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0719048733411253,-0.0290194617835309,0,-0.0719048733411253,0.273573464559757,0.320315701597235,0.287343166954576,0.371823275607202,0.539874269091851,0.439501767243421,0.370399336655947,0.232136737606865,0.256833037968407,0.291891521202932,0.321245216162687,0.293773220902084,0.477464558730386,0.262316238642176,0.333488237785901,0.0779562434243247,0.370008068259179,0.459584871127674,0.342614275100865,0.425843589280563,0.263105731146261,0.499707545108503,0.315208684852781,0.406980041248955,0.420094861341277,0.369861483895129,0.356784881941812,0.31255969332037,0.286136300100265,0.349192768071317,0.247109086673333,0.365236536754781,0.104076685252447,0.308955452027733,0.407666821660431,0.575790009402961,0.515546610031736,0.601105463975863
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
}}
}}

Revision as of 13:29, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr3:96332535..96332537,+p@chr3:96332535..96332537
+
Mm9::chr4:135803847..135803926,+p1@Tcea3
Mm9::chr4:135803932..135803943,+p2@Tcea3


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:3436&oldid=2152722"