Coexpression cluster:C3873: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 8: | Line 8: | ||
|tf_chipseq_enrich=BDP1#55814;2:700.102272727273:2.7031542867596e-06:9.4199109294256e-05!BRCA1#672;2:13.4561537621492:0.00711980771608456:0.0296261045483946!BRF1#2972;2:1184.78846153846:9.40380308868135e-07:4.02674780967114e-05!CEBPB#1051;3:7.97114762582482:0.00197418705528856:0.0115237045532798!CHD2#1106;3:10.3440228341169:0.000903370110274688:0.00660508757679769!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0279524764551791!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0325460148311419!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0322321757401681!EP300#2033;3:6.7739417262232:0.00321688050010379:0.0167481446934367!FOS#2353;3:8.9979553088944:0.00137249927241713:0.00897741914648792!FOSL2#2355;2:11.2868004030411:0.010053458697312:0.0376753085108387!GATA2#2624;3:12.744931733554:0.000482952770428379:0.0043692917871422!GATA3#2625;2:18.1576775714707:0.00394454681927962:0.0189504818647934!GTF2B#2959;2:21.2958866228828:0.00287818058991141:0.0155812929001533!GTF2F1#2962;3:12.7396608767577:0.000483552504743859:0.00434012891396905!HSF1#3297;3:164.290666666667:2.24910326529255e-07:1.1911465310542e-05!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0128119721190828!IRF3#3661;3:46.9819522114896:9.63568551583244e-06:0.000253550355149414!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0186585205652981!MEF2A#4205;3:18.7432309096441:0.000151824390562247:0.00195035516924114!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0294596183610183!NFKB1#4790;3:5.48806342419384:0.00604938181565543:0.0269662122773161!NFYA#4800;3:18.4255806998305:0.000159813550781416:0.0019972199868446!NFYB#4801;3:16.7597932535365:0.000212364992329618:0.00245916259384776!PAX5#5079;3:6.66956553117783:0.00337029099967726:0.0172976471431173!POLR3A#11128;2:226.088073394495:2.5985838218527e-05:0.000561426346235983!POLR3G#10622;2:1449.62352941176:6.26846128533636e-07:2.86257904756993e-05!PPARGC1A#10891;1:116.683712121212:0.00854576321178668:0.0325686383037436!RFX5#5993;3:12.0479108271951:0.000571724605031258:0.00484661899552431!RXRA#6256;2:13.3830780927555:0.00719643442946573:0.0298308559388359!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0276857855442991!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0246596085377777!STAT1#6772;3:20.7065874971992:0.000112599244104667:0.00154896634023278!TAF7#6879;3:11.4330694049239:0.000669018198194583:0.00543156029238527!TCF12#6938;3:10.6344649021864:0.000831352399020207:0.006294447817984!THAP1#55145;2:20.9127630685675:0.00298344741373694:0.0158690228899044!TRIM28#10155;2:12.3936833635083:0.00836834412943847:0.0329108861475533!USF1#7391;3:6.36149927720796:0.0038840405729056:0.0190327646691544!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0329514914761021 | |tf_chipseq_enrich=BDP1#55814;2:700.102272727273:2.7031542867596e-06:9.4199109294256e-05!BRCA1#672;2:13.4561537621492:0.00711980771608456:0.0296261045483946!BRF1#2972;2:1184.78846153846:9.40380308868135e-07:4.02674780967114e-05!CEBPB#1051;3:7.97114762582482:0.00197418705528856:0.0115237045532798!CHD2#1106;3:10.3440228341169:0.000903370110274688:0.00660508757679769!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0279524764551791!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0325460148311419!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.0322321757401681!EP300#2033;3:6.7739417262232:0.00321688050010379:0.0167481446934367!FOS#2353;3:8.9979553088944:0.00137249927241713:0.00897741914648792!FOSL2#2355;2:11.2868004030411:0.010053458697312:0.0376753085108387!GATA2#2624;3:12.744931733554:0.000482952770428379:0.0043692917871422!GATA3#2625;2:18.1576775714707:0.00394454681927962:0.0189504818647934!GTF2B#2959;2:21.2958866228828:0.00287818058991141:0.0155812929001533!GTF2F1#2962;3:12.7396608767577:0.000483552504743859:0.00434012891396905!HSF1#3297;3:164.290666666667:2.24910326529255e-07:1.1911465310542e-05!IRF1#3659;3:7.6371637535639:0.00224469274729724:0.0128119721190828!IRF3#3661;3:46.9819522114896:9.63568551583244e-06:0.000253550355149414!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0186585205652981!MEF2A#4205;3:18.7432309096441:0.000151824390562247:0.00195035516924114!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0294596183610183!NFKB1#4790;3:5.48806342419384:0.00604938181565543:0.0269662122773161!NFYA#4800;3:18.4255806998305:0.000159813550781416:0.0019972199868446!NFYB#4801;3:16.7597932535365:0.000212364992329618:0.00245916259384776!PAX5#5079;3:6.66956553117783:0.00337029099967726:0.0172976471431173!POLR3A#11128;2:226.088073394495:2.5985838218527e-05:0.000561426346235983!POLR3G#10622;2:1449.62352941176:6.26846128533636e-07:2.86257904756993e-05!PPARGC1A#10891;1:116.683712121212:0.00854576321178668:0.0325686383037436!RFX5#5993;3:12.0479108271951:0.000571724605031258:0.00484661899552431!RXRA#6256;2:13.3830780927555:0.00719643442946573:0.0298308559388359!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0276857855442991!SP1#6667;3:5.6983813781409:0.00540396270171217:0.0246596085377777!STAT1#6772;3:20.7065874971992:0.000112599244104667:0.00154896634023278!TAF7#6879;3:11.4330694049239:0.000669018198194583:0.00543156029238527!TCF12#6938;3:10.6344649021864:0.000831352399020207:0.006294447817984!THAP1#55145;2:20.9127630685675:0.00298344741373694:0.0158690228899044!TRIM28#10155;2:12.3936833635083:0.00836834412943847:0.0329108861475533!USF1#7391;3:6.36149927720796:0.0038840405729056:0.0190327646691544!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0329514914761021 | ||
|tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.287811,0.0430074,0.101122,0.03272,0.0257057,0.139423,0.0275521,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.00424558,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.324808,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.0347684,0.064341,0.209032,0.0693924,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.21992,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.0649715,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.230347,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.000925287,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.0178773,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.00234165,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.0169462,0.0458667,0.104357,0.121154,0.1129,0.312578,0.0151713,0.164202,0.100942,0.062995,0.00549554,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.0101199,0.085973,0.060453,0.059896,0.206862,0.0859236,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.0019681,0.182472,0.0695582,0.0983991,0.0830921,0.116283,0.00982118,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.0585224,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.00453939,0.063292,0.254773,0.119261,0.0865903,0.0380459,0.130174,0.219944,0.355018,0.451377,0.635872,0.051522,0.823736,0.228731,0.335423,0.629514,0.261553,0.446302,0.373681,0.309233,0.49143,0.330703,0.0914012,0.329568,0.53472,0.615744,0.271958,0.292154,0.405773,0.39729,0.217139,0.597171,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.427027,0.0821552,0.463191,0.280025,0.528324,0.520763,0.370782,0.415647,0.484505,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.236436,0.283727,0.314747,0.577664,0.291709,0.448095,0.576651,0.416816,0.292835,0.476744,0.439556,0.373868,0.57762,0.608919,0.18237,0.706298,0.821217,0.400457,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,0.258117,0.503058,0.513852,0.169228,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.176034,0.581837,0.1002,0.671377,0.546839,0.551561,0.448039,0.218623,0.312808,0.117923,0.0451077,0.0747529,0.229003,0.0897888,0.223844,0.0338328,0.294698,0.34331,0.477304,0.289204,0.0605279,0.109738,0.278044,0.490301,0.428671,0.228096,0.0642385,0.19763,0.15631,0.20495,0.421464,0.48267,0.420626,0.165111,0.311758,0.335105,0.0110311,0.145539,0.385517,0.376191,0.447325,0.127215,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.18767,0.293698,0.284593,0.0673219,0.306556,0.305777,0.601433,0.503082,0.169823,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.40841,0.206222,0.525396,0.651524,0.113671,0.269226,0.339277,0.192529,0.281425,0.141758,0.455379,0.520495,0.159617,0.238587,0.372281,0.0293409,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.347298,0.182325,0.34988,0.475069,0.404569,0.6408,0.630264,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.00168976,0.144322,0.223391,0.203656,0.442884,0.11631,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.279795,0.0886747,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.0238665,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.00153556,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.0791124,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.0109933,0.038848,0.000119282,0.0550279,0.0109154,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,3.14868e-09,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.0538132,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.739716,0.288159,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.0163112,0.43617,0.76084,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.060512,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.0972686,0.619906,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.544776,0.115047,0.37006,0.42622,0.448797,0.197484,0.396996,0.36145,0.0966095,0.381071,0.580441,0.276075,0.432035,0.138468,0.390366,0.48809,0.50058,0.443185,0.522904,0.875915,0.0572701,0.227104,0.518585,0.617852,0.38649,0.284625,0.156746,0.192225,0.729153,0.28907,0.164197,0.462688,0.287881,0.21103,0.478174,0.336276,0.468444,0.258219,0.446557,0.243383,0.442897,0.390974,0.382874,0.109758,0.161598,0.751174,0.644754,0.496032,0.476802,0.37357,0.454657,0.477353,0.452741,0.399222,0.185744,0.20342,0.200493,0.20558,0.300504,0.25656,0.107337,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.0448825,0.20075,0.314429,0.181415,0.282286,0.194707,0.616388,0.408413,0.516511,0.322213,0.28903,0.33942,0.61031,0.387276,0.0391112,0.802166,0.180745,0.222037,0.416621,0.416292,0.462712,0.734551,0.057399,0.204817,0.452428,0.138871,0.103502,0.166905,0.19783,0.0833851,0.316453,0.140384,0.175199,0.332919,0.373557,0.523625,0.0980968,0.365487,0.534741,0.39088,0.363192,0.236011,0.00165643,0.273398,0.375787,0.4466,0.351067,0.275347,0.00388821,0.305885,0.241132,0.371414,0.30666,0.303709,0.495883,0.386538,0.508064,0.250964,0.383276,0.0243456,0.504711,0.220231,0.509064,0.196976,0.191517,0.129584,0.235208,0.307334,0.459728,0.283463,0.201728,0.135386,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.197805,0.608187,0.387069,0.332774,0.173874,0.299887,0.266492,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.0358457,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.0542164,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.00178627,0.247588,0.00219731,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.00404853,0.201602,0.0701861,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.0246892,0.207559,0.010576,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.00162178,0.310405,0.00467879,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.0257187,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.0607319,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.0133429,0.0406636,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435 | |tfbs_overrepresentation=0.147255,0.0586687,0.716932,0.0477154,0.199763,0.287811,0.0430074,0.101122,0.03272,0.0257057,0.139423,0.0275521,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.00424558,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.324808,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.149417,0.108602,0.0759481,0.054569,0.0504887,0.352278,0.0600088,0.0860723,0.167053,0.378921,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.0347684,0.064341,0.209032,0.0693924,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.21992,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.0649715,0.144217,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.155998,0.230347,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.000925287,0.117549,0.0747594,0.228385,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.0178773,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.00234165,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.0169462,0.0458667,0.104357,0.121154,0.1129,0.312578,0.0151713,0.164202,0.100942,0.062995,0.00549554,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.0101199,0.085973,0.060453,0.059896,0.206862,0.0859236,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.0019681,0.182472,0.0695582,0.0983991,0.0830921,0.116283,0.00982118,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.0585224,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.0920653,0.118078,0.0755168,0.00453939,0.063292,0.254773,0.119261,0.0865903,0.0380459,0.130174,0.219944,0.355018,0.451377,0.635872,0.051522,0.823736,0.228731,0.335423,0.629514,0.261553,0.446302,0.373681,0.309233,0.49143,0.330703,0.0914012,0.329568,0.53472,0.615744,0.271958,0.292154,0.405773,0.39729,0.217139,0.597171,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.427027,0.0821552,0.463191,0.280025,0.528324,0.520763,0.370782,0.415647,0.484505,0.253571,0.276829,0.301787,0.481778,0.316882,0.223503,0.503224,0.236436,0.283727,0.314747,0.577664,0.291709,0.448095,0.576651,0.416816,0.292835,0.476744,0.439556,0.373868,0.57762,0.608919,0.18237,0.706298,0.821217,0.400457,0.275351,0.236471,0.185661,0.346319,0.535598,0.270984,0.258117,0.503058,0.513852,0.169228,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.176034,0.581837,0.1002,0.671377,0.546839,0.551561,0.448039,0.218623,0.312808,0.117923,0.0451077,0.0747529,0.229003,0.0897888,0.223844,0.0338328,0.294698,0.34331,0.477304,0.289204,0.0605279,0.109738,0.278044,0.490301,0.428671,0.228096,0.0642385,0.19763,0.15631,0.20495,0.421464,0.48267,0.420626,0.165111,0.311758,0.335105,0.0110311,0.145539,0.385517,0.376191,0.447325,0.127215,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.18767,0.293698,0.284593,0.0673219,0.306556,0.305777,0.601433,0.503082,0.169823,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.40841,0.206222,0.525396,0.651524,0.113671,0.269226,0.339277,0.192529,0.281425,0.141758,0.455379,0.520495,0.159617,0.238587,0.372281,0.0293409,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.347298,0.182325,0.34988,0.475069,0.404569,0.6408,0.630264,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.00168976,0.144322,0.223391,0.203656,0.442884,0.11631,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.134852,0.10689,0.273326,0.0627924,0.381386,0.0179103,0.303939,0.279795,0.0886747,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.0238665,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.517717,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.00153556,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.0791124,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.0109933,0.038848,0.000119282,0.0550279,0.0109154,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,3.14868e-09,0.0761239,0.172491,0.0818785,0.182701,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.0538132,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.739716,0.288159,0.21727,0.289306,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.0163112,0.43617,0.76084,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.060512,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.257598,0.103667,0.113069,0.025556,0.16791,0.09066,0.585505,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.0972686,0.619906,0.0360851,0.412187,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.544776,0.115047,0.37006,0.42622,0.448797,0.197484,0.396996,0.36145,0.0966095,0.381071,0.580441,0.276075,0.432035,0.138468,0.390366,0.48809,0.50058,0.443185,0.522904,0.875915,0.0572701,0.227104,0.518585,0.617852,0.38649,0.284625,0.156746,0.192225,0.729153,0.28907,0.164197,0.462688,0.287881,0.21103,0.478174,0.336276,0.468444,0.258219,0.446557,0.243383,0.442897,0.390974,0.382874,0.109758,0.161598,0.751174,0.644754,0.496032,0.476802,0.37357,0.454657,0.477353,0.452741,0.399222,0.185744,0.20342,0.200493,0.20558,0.300504,0.25656,0.107337,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.0448825,0.20075,0.314429,0.181415,0.282286,0.194707,0.616388,0.408413,0.516511,0.322213,0.28903,0.33942,0.61031,0.387276,0.0391112,0.802166,0.180745,0.222037,0.416621,0.416292,0.462712,0.734551,0.057399,0.204817,0.452428,0.138871,0.103502,0.166905,0.19783,0.0833851,0.316453,0.140384,0.175199,0.332919,0.373557,0.523625,0.0980968,0.365487,0.534741,0.39088,0.363192,0.236011,0.00165643,0.273398,0.375787,0.4466,0.351067,0.275347,0.00388821,0.305885,0.241132,0.371414,0.30666,0.303709,0.495883,0.386538,0.508064,0.250964,0.383276,0.0243456,0.504711,0.220231,0.509064,0.196976,0.191517,0.129584,0.235208,0.307334,0.459728,0.283463,0.201728,0.135386,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.197805,0.608187,0.387069,0.332774,0.173874,0.299887,0.266492,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.0358457,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.0542164,0.21801,0.198614,0.186804,0.123324,0.199468,0.0325925,0.0933115,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.00178627,0.247588,0.00219731,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.00404853,0.201602,0.0701861,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.203781,0.0246892,0.207559,0.010576,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.00162178,0.310405,0.00467879,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.263159,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.264413,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.0257187,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.0607319,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.0133429,0.0406636,0.071111,0.270604,0.101021,0.222548,0.175934,0.157274,0.215705,0.252796,0.205954,0.361435 | ||
|tfbs_overrepresentation_for_novel_motifs=0.699513,0.14394,0.690871,0.855819,0.641468,0.853988,0.937929,0.494933,0.491742,0.221898,0.820209,0.985163,0.436625,0.925331,0.639839,0.667627,1.17594,0.575162,0.452865,0.305559,0.69094,0.242883,1.96998,1.53533,0.743951,1.00973,0.409304,0.842925,0.645155,0.388328,1.86765,1.21459,0.534793,0.439574,0.599922,0.137917,0.596053,0.855276,0.567465,0.469078,0.598234,0.777097,0.259059,0.63803,0.461452,0.726632,0.939121,0.808003,0.247669,0.645308,1.02504,0.951993,0.336258,1.29475,1.45259,0.928548,0.650353,0.892517,0.388177,0.891404,1.25741,0.941709,1.23315,1.14672,0.961293,1.11026,1.54311,1.91674,1.2037,1.75271,0.762094,0.502203,0.333216,1.45054,0.430728,1.06461,0.396746,1.12884,1.20029,0.73687,0.459024,1.14559,0.960908,0.498519,1.39759,0.507157,0.303648,0.381882,1.053,2.0169,1.63834,1.36973,1.23218,0.543775,0.642354,1.37703,0.450952,1.27663,1.05794,0.360456,0.569121,1.22626,1.27082,1.1798,1.09802,0.815119,1.16312,0.921547,0.743661,0.622396,0.703975,1.26794,0.684398,0.830777,1.58942,0.594137,0.553386,0.794219,1.10778,0.547323,1.44203,1.0504,0.850918,0.973172,1.70203,1.12965,0.930979,1.2374,1.48578,0.561252,1.37044,0.798812,1.50051,0.969553,1.65144,0.372828,0.788803,0.843556,1.60823,2.47382,2.06967,1.57016,0.932872,1.27296,1.09989,0.883164,1.08214,2.31409,0.773313,0.539692,0.318511,0.250511,1.37083,0.481626,0.941179,1.78371,1.03563,0.624795,0.744018,0.710709,1.56892,1.35169,1.19946,0.714443,1.11698,0.960047,0.524529,0.936473,0.0768232 | |||
}} | }} | ||
Revision as of 16:24, 26 November 2012
Full id: C3873_neuroblastoma_nonsmall_teratocarcinoma_acute_neuroectodermal_medulloblastoma_small
Phase1 CAGE Peaks
| Hg19::chr1:153643418..153643429,- | p2@ILF2 |
| Hg19::chr1:153643442..153643475,- | p1@ILF2 |
| Hg19::chr1:156308018..156308101,- | p1@CCT3 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|---|---|
| animal cell | 1.13e-30 | 679 |
| eukaryotic cell | 1.13e-30 | 679 |
| epithelial cell | 9.37e-17 | 253 |
| native cell | 1.12e-15 | 722 |
| embryonic cell | 1.48e-13 | 250 |
| non-terminally differentiated cell | 9.98e-09 | 106 |
| endothelial cell of vascular tree | 5.95e-08 | 24 |
| squamous epithelial cell | 7.87e-08 | 63 |
| neural cell | 8.90e-08 | 25 |
| blood vessel endothelial cell | 2.68e-07 | 18 |
| embryonic blood vessel endothelial progenitor cell | 2.68e-07 | 18 |
| neurectodermal cell | 7.28e-07 | 59 |
| mesodermal cell | 9.71e-07 | 121 |
| Ontology term | p-value | n |
|---|---|---|
| simple squamous epithelium | 4.58e-08 | 22 |
| squamous epithelium | 2.21e-07 | 25 |
| blood vessel endothelium | 2.68e-07 | 18 |
| endothelium | 2.68e-07 | 18 |
| cardiovascular system endothelium | 2.68e-07 | 18 |
| Ontology term | p-value | n |
|---|---|---|
| cancer | 1.98e-43 | 235 |
| disease of cellular proliferation | 2.06e-43 | 239 |
| cell type cancer | 2.27e-21 | 143 |
| organ system cancer | 3.84e-21 | 137 |
| carcinoma | 7.76e-18 | 106 |
| hematologic cancer | 5.01e-14 | 51 |
| immune system cancer | 5.01e-14 | 51 |
| leukemia | 3.77e-11 | 39 |
| myeloid leukemia | 1.43e-08 | 31 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| BDP1#55814 | 2 | 700.102272727273 | 2.7031542867596e-06 | 9.4199109294256e-05 |
| BRCA1#672 | 2 | 13.4561537621492 | 0.00711980771608456 | 0.0296261045483946 |
| BRF1#2972 | 2 | 1184.78846153846 | 9.40380308868135e-07 | 4.02674780967114e-05 |
| CEBPB#1051 | 3 | 7.97114762582482 | 0.00197418705528856 | 0.0115237045532798 |
| CHD2#1106 | 3 | 10.3440228341169 | 0.000903370110274688 | 0.00660508757679769 |
| CTCF#10664 | 3 | 5.36025637307503 | 0.006492509252767 | 0.0279524764551791 |
| E2F1#1869 | 3 | 4.90738921487932 | 0.00846098534723939 | 0.0325460148311419 |
| E2F6#1876 | 3 | 5.01715573169739 | 0.0079176980688633 | 0.0322321757401681 |
| EP300#2033 | 3 | 6.7739417262232 | 0.00321688050010379 | 0.0167481446934367 |
| FOS#2353 | 3 | 8.9979553088944 | 0.00137249927241713 | 0.00897741914648792 |
| FOSL2#2355 | 2 | 11.2868004030411 | 0.010053458697312 | 0.0376753085108387 |
| GATA2#2624 | 3 | 12.744931733554 | 0.000482952770428379 | 0.0043692917871422 |
| GATA3#2625 | 2 | 18.1576775714707 | 0.00394454681927962 | 0.0189504818647934 |
| GTF2B#2959 | 2 | 21.2958866228828 | 0.00287818058991141 | 0.0155812929001533 |
| GTF2F1#2962 | 3 | 12.7396608767577 | 0.000483552504743859 | 0.00434012891396905 |
| HSF1#3297 | 3 | 164.290666666667 | 2.24910326529255e-07 | 1.1911465310542e-05 |
| IRF1#3659 | 3 | 7.6371637535639 | 0.00224469274729724 | 0.0128119721190828 |
| IRF3#3661 | 3 | 46.9819522114896 | 9.63568551583244e-06 | 0.000253550355149414 |
| MAX#4149 | 3 | 6.45255550900712 | 0.00372191383426551 | 0.0186585205652981 |
| MEF2A#4205 | 3 | 18.7432309096441 | 0.000151824390562247 | 0.00195035516924114 |
| MYC#4609 | 3 | 5.2222818716094 | 0.00702084375574015 | 0.0294596183610183 |
| NFKB1#4790 | 3 | 5.48806342419384 | 0.00604938181565543 | 0.0269662122773161 |
| NFYA#4800 | 3 | 18.4255806998305 | 0.000159813550781416 | 0.0019972199868446 |
| NFYB#4801 | 3 | 16.7597932535365 | 0.000212364992329618 | 0.00245916259384776 |
| PAX5#5079 | 3 | 6.66956553117783 | 0.00337029099967726 | 0.0172976471431173 |
| POLR3A#11128 | 2 | 226.088073394495 | 2.5985838218527e-05 | 0.000561426346235983 |
| POLR3G#10622 | 2 | 1449.62352941176 | 6.26846128533636e-07 | 2.86257904756993e-05 |
| PPARGC1A#10891 | 1 | 116.683712121212 | 0.00854576321178668 | 0.0325686383037436 |
| RFX5#5993 | 3 | 12.0479108271951 | 0.000571724605031258 | 0.00484661899552431 |
| RXRA#6256 | 2 | 13.3830780927555 | 0.00719643442946573 | 0.0298308559388359 |
| SIN3A#25942 | 3 | 5.40888472681514 | 0.00631896197799152 | 0.0276857855442991 |
| SP1#6667 | 3 | 5.6983813781409 | 0.00540396270171217 | 0.0246596085377777 |
| STAT1#6772 | 3 | 20.7065874971992 | 0.000112599244104667 | 0.00154896634023278 |
| TAF7#6879 | 3 | 11.4330694049239 | 0.000669018198194583 | 0.00543156029238527 |
| TCF12#6938 | 3 | 10.6344649021864 | 0.000831352399020207 | 0.006294447817984 |
| THAP1#55145 | 2 | 20.9127630685675 | 0.00298344741373694 | 0.0158690228899044 |
| TRIM28#10155 | 2 | 12.3936833635083 | 0.00836834412943847 | 0.0329108861475533 |
| USF1#7391 | 3 | 6.36149927720796 | 0.0038840405729056 | 0.0190327646691544 |
| YY1#7528 | 3 | 4.91117074985386 | 0.00844145534180826 | 0.0329514914761021 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
