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MCL coexpression mm9:426: Difference between revisions

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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!6.20e-25!22;UBERON:0007499!6.20e-25!22;UBERON:0006925!6.20e-25!22;UBERON:0009497!6.20e-25!22;UBERON:0000015!6.20e-25!22;UBERON:0002423!6.20e-25!22;UBERON:0006235!6.20e-25!22;UBERON:0008835!6.20e-25!22;UBERON:0003894!6.20e-25!22;UBERON:0004161!6.20e-25!22;UBERON:0008836!6.20e-25!22;UBERON:0009854!1.69e-23!23;UBERON:0009856!1.69e-23!23;UBERON:0002365!5.60e-21!25;UBERON:0002330!5.60e-21!25;UBERON:0005256!4.43e-15!45;UBERON:0005172!4.67e-13!49;UBERON:0005173!4.67e-13!49;UBERON:0002417!4.67e-13!49;UBERON:0000916!4.67e-13!49;UBERON:0009569!1.30e-09!66;UBERON:0003104!1.60e-09!61;UBERON:0009142!1.60e-09!61;UBERON:0003914!1.44e-08!47;UBERON:0002368!2.26e-08!60;UBERON:0001041!1.19e-07!80;UBERON:0005177!3.67e-07!79;UBERON:0002530!3.96e-07!65
|ontology_enrichment_uberon=UBERON:0002107!6.20e-25!22;UBERON:0007499!6.20e-25!22;UBERON:0006925!6.20e-25!22;UBERON:0009497!6.20e-25!22;UBERON:0000015!6.20e-25!22;UBERON:0002423!6.20e-25!22;UBERON:0006235!6.20e-25!22;UBERON:0008835!6.20e-25!22;UBERON:0003894!6.20e-25!22;UBERON:0004161!6.20e-25!22;UBERON:0008836!6.20e-25!22;UBERON:0009854!1.69e-23!23;UBERON:0009856!1.69e-23!23;UBERON:0002365!5.60e-21!25;UBERON:0002330!5.60e-21!25;UBERON:0005256!4.43e-15!45;UBERON:0005172!4.67e-13!49;UBERON:0005173!4.67e-13!49;UBERON:0002417!4.67e-13!49;UBERON:0000916!4.67e-13!49;UBERON:0009569!1.30e-09!66;UBERON:0003104!1.60e-09!61;UBERON:0009142!1.60e-09!61;UBERON:0003914!1.44e-08!47;UBERON:0002368!2.26e-08!60;UBERON:0001041!1.19e-07!80;UBERON:0005177!3.67e-07!79;UBERON:0002530!3.96e-07!65
|tfbs_overrepresentation_for_novel_motifs=0.162057,1.97817,0.144778,0.191238,0.572598,0.583749,0.270195,0.340454,0.040605,0.0489646,0.236307,0.260789,0.340991,0.27987,0.615754,0,0.44163,0.937919,1.28115,2.23716,0.121654,0.32474,0.279154,0.0782709,0.457081,0.301898,2.68788,0.216938,1.67819,0.0796386,0.206597,0.531719,0.257084,0.468945,0.296456,0.0253178,0.0693463,0.257981,0.0591424,0.399439,0.56228,0.210373,0.28733,0.0888852,0.0330709,0.183361,0.372907,0.228683,1.38845,0.699131,0.426383,0.323798,0.922321,0.661847,0.67813,0.28555,0.722962,0.25091,0.111806,0.283926,0.513661,0.331566,0.69092,0.4166,0.294453,0.451957,0.806865,1.14503,0.509463,1.00145,0.132733,0.353861,0.0300638,0.709559,0.0246496,0.0215675,0.468707,0.953084,0.498264,2.50797,0.997509,0.456892,0.330377,0.930992,0.602212,0.000691814,0.569958,0.649538,0.377064,1.30447,0.873554,0.606796,0.543309,0.280055,0.209139,0.416353,0.14406,0.545856,0.373124,0.164824,0.244202,0.531465,0.645628,0.4269,1.09022,0.21005,0.478524,0.225669,0.127231,0.122746,0.157325,0.647285,0.124928,0.240232,0.880323,0.263255,0.00986677,0.193921,0.442771,0.0675617,0.714636,0.398522,0.303371,0.362534,0.932468,0.501574,0.276618,0.53717,0.805419,0.0836776,0.629874,0.186072,0.777296,0.296474,0.9011,1.36269,0.167758,0.211406,0.853868,1.66928,1.27308,0.811357,0.313144,0.541193,0.420352,0.210705,0.375553,1.62988,0.975672,0.27407,0.0181622,0.00366709,0.66331,0.194002,1.45824,0.739975,0.867144,0.647202,0.160402,0.167568,0.862985,0.601424,0.501973,0.15582,0.417485,0.289792,0.242542,0.259556,0.00651025
}}
}}

Revision as of 18:20, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr12:29308147..29308161,-p1@Colec11
Mm9::chr12:29308178..29308194,-p2@Colec11
Mm9::chr12:29308215..29308236,-p4@Colec11
Mm9::chr12:29308237..29308259,-p3@Colec11
Mm9::chr12:29308266..29308279,-p5@Colec11
Mm9::chr14:34754207..34754238,+p1@Gdf2
Mm9::chr15:54242202..54242219,+p2@Colec10
Mm9::chr15:54242222..54242233,+p3@Colec10
Mm9::chr15:54242310..54242352,+p1@Colec10
Mm9::chr16:45434966..45434967,+p@chr16:45434966..45434967
+
Mm9::chr2:25316589..25316600,-p5@BC029214
Mm9::chr3:102768047..102768060,-p1@Nr1h5
Mm9::chr3:82850611..82850638,+p@chr3:82850611..82850638
+
Mm9::chr4:46551738..46551739,+p@chr4:46551738..46551739
+
Mm9::chr5:137853851..137853855,-p@chr5:137853851..137853855
-
Mm9::chr5:90905612..90905631,-p@chr5:90905612..90905631
-
Mm9::chr8:120225720..120225750,+p2@Hsd17b2
Mm9::chr9:20684162..20684182,-p1@Angptl6


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
liver6.20e-2522
epithelial sac6.20e-2522
digestive gland6.20e-2522
epithelium of foregut-midgut junction6.20e-2522
anatomical boundary6.20e-2522
hepatobiliary system6.20e-2522
foregut-midgut junction6.20e-2522
hepatic diverticulum6.20e-2522
liver primordium6.20e-2522
septum transversum6.20e-2522
liver bud6.20e-2522
digestive tract diverticulum1.69e-2323
sac1.69e-2323
exocrine gland5.60e-2125
exocrine system5.60e-2125
trunk mesenchyme4.43e-1545
abdomen element4.67e-1349
abdominal segment element4.67e-1349
abdominal segment of trunk4.67e-1349
abdomen4.67e-1349
subdivision of trunk1.30e-0966
mesenchyme1.60e-0961
entire embryonic mesenchyme1.60e-0961
epithelial tube1.44e-0847
endocrine gland2.26e-0860
foregut1.19e-0780
trunk region element3.67e-0779
gland3.96e-0765


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}