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|ontology_enrichment_disease=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005153!9.78e-07!17
|ontology_enrichment_uberon=UBERON:0005153!9.78e-07!17
|tfbs_overrepresentation_for_novel_motifs=0.557864,0.293744,0.529553,1.46803,0.406364,0.618805,0.715644,0.300268,1.51246,0.370407,0.668936,0.702872,0.812978,0.728641,0.424775,0,0.930881,0.397593,0.283802,0.185796,0.489529,0.145201,0.727684,0.404661,0.537749,0.757752,0.274609,0.641282,0.456327,0.227599,0.626183,1.03545,0.395107,0.704734,0.425309,0.791367,0.384813,0.699032,1.6885,0.328675,0.401916,0.631725,0.134724,0.426986,1.78875,0.591277,0.847828,0.658142,0.115788,1.16276,0.912738,0.786094,0.220111,1.18062,1.19842,0.73621,0.469329,0.689304,0.731291,0.734051,1.01481,0.796017,0.865544,0.901018,0.747985,0.943088,1.33705,1.68977,1.00999,1.54147,0.509047,0.30684,0.152094,1.23259,0.257421,0.245132,0.70455,0.835925,0.997094,0.494135,0.308173,0.948899,0.794502,0.796301,1.1148,0.272382,0.0882907,0.227755,0.852952,1.85284,1.40768,1.11989,1.04863,0.412897,0.356133,0.3366,0.806207,1.05152,0.848095,0.20438,0.384901,1.03517,1.16282,0.913356,0.91226,0.631253,0.97421,0.653843,0.499439,0.491483,0.550229,1.16464,0.495367,0.674448,1.41481,0.399936,0.0998646,0.607321,0.932233,0.380707,1.23809,0.879184,0.759676,0.834976,1.46955,1.00091,0.724289,1.04166,1.33551,0.416189,1.14546,0.595426,1.3055,0.750642,1.43666,0.143464,0.566955,1.53084,1.3869,2.2222,1.82084,4.78856,0.772375,1.04623,0.905521,0.632211,0.851091,2.18247,0.569503,0.408309,0.230371,0.133815,1.18223,0.343194,0.749664,1.26545,0.787153,0.438007,0.555203,0.566652,1.39653,1.11392,1.00137,0.547782,0.90208,0.741834,0.997706,0.701187,0.425122
}}
}}

Revision as of 20:23, 26 November 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr1:74055065..74055086,-p@chr1:74055065..74055086
-
Mm9::chr5:92816942..92816953,+p9@Art3
Mm9::chr7:26173990..26174003,-p8@Lipe
Mm9::chr7:26174005..26174021,-p6@Lipe
Mm9::chr7:26174031..26174049,-p7@Lipe


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


GO IDGO nameFDR corrected p-value
GO:0046340diacylglycerol catabolic process0.00317738575938492
GO:0042134rRNA primary transcript binding0.00317738575938492
GO:0044269glycerol ether catabolic process0.00317738575938492
GO:0046464acylglycerol catabolic process0.00317738575938492
GO:0046461neutral lipid catabolic process0.00317738575938492
GO:0046503glycerolipid catabolic process0.00317738575938492
GO:0003716RNA polymerase I transcription termination factor activity0.00317738575938492
GO:0019433triacylglycerol catabolic process0.00317738575938492
GO:0003715transcription termination factor activity0.00317738575938492
GO:0006361transcription initiation from RNA polymerase I promoter0.00381275845498797
GO:0003956NAD(P)+-protein-arginine ADP-ribosyltransferase activity0.00586513943060342
GO:0016599caveolar membrane0.00586513943060342
GO:0046339diacylglycerol metabolic process0.00586513943060342
GO:0005901caveola0.00612680813617224
GO:0006360transcription from RNA polymerase I promoter0.00635355286224057
GO:0004806triacylglycerol lipase activity0.00714735525899337
GO:0006471protein amino acid ADP-ribosylation0.00896824701106051
GO:0006641triacylglycerol metabolic process0.0100573111953749
GO:0019843rRNA binding0.0103199969626036
GO:0006639acylglycerol metabolic process0.0103199969626036
GO:0006352transcription initiation0.0103199969626036
GO:0046486glycerolipid metabolic process0.0103199969626036
GO:0006638neutral lipid metabolic process0.0103199969626036
GO:0006662glycerol ether metabolic process0.0103199969626036
GO:0044242cellular lipid catabolic process0.0106687042123577
GO:0016763transferase activity, transferring pentosyl groups0.012088563880812
GO:0016298lipase activity0.0217513775917241
GO:0008203cholesterol metabolic process0.0217513775917241
GO:0016125sterol metabolic process0.0232938751559505
GO:0016042lipid catabolic process0.0294768293112085
GO:0004091carboxylesterase activity0.0318903656507904
GO:0048503GPI anchor binding0.0345512866110112
GO:0065004protein-DNA complex assembly0.0345512866110112
GO:0008202steroid metabolic process0.0391027453119521
GO:0035091phosphoinositide binding0.0444679609992793



Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
epithelial bud9.78e-0717


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}