UBERON:0000915: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |<html><div style="width:320px;height:320px;float:right;"><img width | ||
|alt_id=UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295 | |||
|anatomical_img_id=FMA:9576 | |||
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|comment=Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest | |comment=Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest | ||
|created_by= | |created_by= | ||
| | |def="Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|is_a=UBERON:0009569 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=thoracic segment of trunk | |||
|namespace= | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000026;;"spatially_disjoint_from" UBERON:0000033;;"spatially_disjoint_from" UBERON:0002417 | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;"spatially_disjoint_from" UBERON:0000026;;"spatially_disjoint_from" UBERON:0000033;;"spatially_disjoint_from" UBERON:0002417 | ||
| | |subset=uberon_slim | ||
| | |synonym="thorax" RELATED [MA:0000022];;"upper body" RELATED [] | ||
|union_of= | |||
|xref=FMA:259209;;MA:0000022;;SCTID:302551006 | |||
}} | }} | ||
Revision as of 18:36, 29 November 2012
| Name: | thoracic segment of trunk | ||
|---|---|---|---|
| Definition: | "Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax] | ||
| Xrefs: |
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| Synonyms: |
"thorax" RELATED [MA:0000022] "upper body" RELATED [] | ||
| Comments: | Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest | ||
| Alt_id: | UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0009569(subdivision of trunk) |
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Children
| part of: | UBERON:0001103 (diaphragm),UBERON:0001443 (chest),UBERON:0001515 (thoracic aorta),UBERON:0001533 (subclavian artery),UBERON:0002224 (thoracic cavity),UBERON:0003830 (thoracic segment muscle),UBERON:0003834 (thoracic segment blood vessel),UBERON:0005178 (thoracic cavity element),UBERON:0005181 (thoracic segment organ) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10080-102A8 (breast, adult, donor1)
- 10090-102B9
- 10099-102C9
... further results Mouse (Mus musculus)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10080-102A8 (breast, adult, donor1)
- 10090-102B9
- 10099-102C9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with {{{id}}} (thoracic segment of trunk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
No analysis results
