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MCL coexpression mm9:172: Difference between revisions

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|ontology_enrichment_uberon=UBERON:0007100!6.40e-20!18;UBERON:0000948!6.40e-20!18;UBERON:0005498!6.40e-20!18;UBERON:0004140!6.40e-20!18;UBERON:0009881!6.40e-20!18;UBERON:0004141!6.40e-20!18;UBERON:0003084!6.40e-20!18;UBERON:0007005!6.40e-20!18;UBERON:0004139!6.40e-20!18;UBERON:0004291!6.40e-20!18;UBERON:0004535!3.34e-15!23;UBERON:0001009!3.34e-15!23;UBERON:0004872!4.72e-10!33;UBERON:0003103!6.92e-09!43
|ontology_enrichment_uberon=UBERON:0007100!6.40e-20!18;UBERON:0000948!6.40e-20!18;UBERON:0005498!6.40e-20!18;UBERON:0004140!6.40e-20!18;UBERON:0009881!6.40e-20!18;UBERON:0004141!6.40e-20!18;UBERON:0003084!6.40e-20!18;UBERON:0007005!6.40e-20!18;UBERON:0004139!6.40e-20!18;UBERON:0004291!6.40e-20!18;UBERON:0004535!3.34e-15!23;UBERON:0001009!3.34e-15!23;UBERON:0004872!4.72e-10!33;UBERON:0003103!6.92e-09!43
|tfbs_overrepresentation_for_novel_motifs=0.0389053,3.36317,0.0294911,0.311971,0.223601,0.859972,0.296893,0.290931,0.327033,0.331572,0.232446,0.278523,0.577423,0.576511,0.263522,0,0.101139,0.205766,0.488738,0.729045,1.90258,0.377385,0.0331133,0.12259,0.203916,0.157591,1.73222,0.0770837,0.339499,0.0138275,0.354954,0.152268,3.82703,0.09409,0.607438,1.51325,0.000536597,0.11305,0.524065,0.392966,1.53035,0.0718904,0.160831,1.1107,0.0603161,0.0105382,0.240728,0.0194936,1.68121,0.106058,0.310824,0.407706,1.54323,0.238955,0.699055,0.0351102,0.373472,0.486105,0.395152,0.138662,0.14137,0.190793,0.0872345,0.29758,0.0379895,0.106569,0.349034,0.640176,0.138881,0.512137,0.0733141,0.448811,0.00263858,0.27382,0.00406903,0.0442359,0.624304,0.0640283,1.32909,0.659673,0.454823,0.109206,0.421947,0.102311,0.197571,9.05772e-07,1.35539,0.0302888,0.0700014,0.787496,0.403271,0.581486,0.481263,0.133606,0.132107,1.26939,2.70144,0.16101,0.240999,1.32755,0.297621,0.152113,0.6449,0.643663,0.0931391,0.0716395,0.384244,0.0188018,0.1516,0.0194203,0.393518,0.228614,0.14653,0.0222719,0.408882,0.116514,0.000351775,0.059602,0.682046,0.0154402,0.277614,0.576257,0.364331,1.28461,0.452704,0.418085,0.0323383,0.155617,0.34788,0.0258777,0.618997,0.147029,0.325647,0.15178,0.42622,0.200231,0.119494,0.188435,0.387058,1.13687,0.758149,0.352624,0.384919,0.478004,0.302639,0.187242,0.894067,1.09858,2.12109,0.0232317,0.0321669,2.21893e-05,0.240002,0.024426,0.627322,0.296775,0.182817,0.170511,1.23565,0.0421805,2.70709,0.197042,0.829016,0.218973,0.0889128,0.6082,0.096844,0.114544,1.61155e-05
|tfbs_overrepresentation_for_novel_motifs=0.0389053,3.36317,0.0294911,0.311971,0.223601,0.859972,0.296893,0.290931,0.327033,0.331572,0.232446,0.278523,0.577423,0.576511,0.263522,0,0.101139,0.205766,0.488738,0.729045,1.90258,0.377385,0.0331133,0.12259,0.203916,0.157591,1.73222,0.0770837,0.339499,0.0138275,0.354954,0.152268,3.82703,0.09409,0.607438,1.51325,0.000536597,0.11305,0.524065,0.392966,1.53035,0.0718904,0.160831,1.1107,0.0603161,0.0105382,0.240728,0.0194936,1.68121,0.106058,0.310824,0.407706,1.54323,0.238955,0.699055,0.0351102,0.373472,0.486105,0.395152,0.138662,0.14137,0.190793,0.0872345,0.29758,0.0379895,0.106569,0.349034,0.640176,0.138881,0.512137,0.0733141,0.448811,0.00263858,0.27382,0.00406903,0.0442359,0.624304,0.0640283,1.32909,0.659673,0.454823,0.109206,0.421947,0.102311,0.197571,9.05772e-07,1.35539,0.0302888,0.0700014,0.787496,0.403271,0.581486,0.481263,0.133606,0.132107,1.26939,2.70144,0.16101,0.240999,1.32755,0.297621,0.152113,0.6449,0.643663,0.0931391,0.0716395,0.384244,0.0188018,0.1516,0.0194203,0.393518,0.228614,0.14653,0.0222719,0.408882,0.116514,0.000351775,0.059602,0.682046,0.0154402,0.277614,0.576257,0.364331,1.28461,0.452704,0.418085,0.0323383,0.155617,0.34788,0.0258777,0.618997,0.147029,0.325647,0.15178,0.42622,0.200231,0.119494,0.188435,0.387058,1.13687,0.758149,0.352624,0.384919,0.478004,0.302639,0.187242,0.894067,1.09858,2.12109,0.0232317,0.0321669,2.21893e-05,0.240002,0.024426,0.627322,0.296775,0.182817,0.170511,1.23565,0.0421805,2.70709,0.197042,0.829016,0.218973,0.0889128,0.6082,0.096844,0.114544,1.61155e-05
|tfbs_overrepresentation_jaspar=MA0003.1;1.70472e-09,MA0004.1;0.312918,MA0006.1;0.399798,MA0007.1;0.487115,MA0009.1;0.167202,MA0014.1;5.61396e-08,MA0017.1;0.188413,MA0019.1;0.958912,MA0024.1;0.142816,MA0025.1;0.322299,MA0027.1;1.62582,MA0028.1;0.00127942,MA0029.1;0.410714,MA0030.1;0.419422,MA0031.1;1.22969,MA0038.1;1.00729,MA0040.1;0.174484,MA0041.1;0.00482745,MA0042.1;0.0233666,MA0043.1;0.22679,MA0046.1;0.18846,MA0048.1;0.594953,MA0050.1;0.0793552,MA0051.1;0.165402,MA0052.1;1.60916,MA0055.1;0.953283,MA0056.1;0,MA0057.1;0.0118969,MA0058.1;0.0674925,MA0059.1;0.500361,MA0060.1;0.0063913,MA0061.1;0.0338921,MA0063.1;0,MA0066.1;0.0375122,MA0067.1;0.407866,MA0068.1;0.000578652,MA0069.1;1.01659,MA0070.1;0.173723,MA0071.1;2.20942,MA0072.1;0.504343,MA0073.1;5.43695e-11,MA0074.1;0.0288039,MA0076.1;0.00237158,MA0077.1;0.156447,MA0078.1;1.16315,MA0081.1;0.579058,MA0083.1;0.226272,MA0084.1;0.68852,MA0087.1;0.198825,MA0088.1;0.224148,MA0089.1;0,MA0090.1;0.249242,MA0091.1;0.17097,MA0092.1;0.43504,MA0093.1;0.300182,MA0095.1;0,MA0098.1;0,MA0100.1;0.0262954,MA0101.1;0.0835392,MA0103.1;1.02975,MA0105.1;0.0226861,MA0106.1;0.203708,MA0107.1;0.0415291,MA0108.2;0.087191,MA0109.1;0,MA0111.1;0.00960049,MA0113.1;1.08646,MA0114.1;0.140853,MA0115.1;0.228622,MA0116.1;0.0697202,MA0117.1;1.76927,MA0119.1;0.778986,MA0122.1;0.220538,MA0124.1;0.3661,MA0125.1;0.310357,MA0130.1;0,MA0131.1;0.0760282,MA0132.1;0,MA0133.1;0,MA0135.1;0.25106,MA0136.1;0.910725,MA0139.1;0.0264306,MA0140.1;0.801702,MA0141.1;4.66752,MA0142.1;0.354746,MA0143.1;1.61393,MA0144.1;0.0119614,MA0145.1;0.0892924,MA0146.1;0.000402934,MA0147.1;0.0913526,MA0148.1;0.174659,MA0149.1;0.00528973,MA0062.2;0.000170691,MA0035.2;1.1869,MA0039.2;2.35178e-11,MA0138.2;7.0191,MA0002.2;1.74025,MA0137.2;0.241865,MA0104.2;0.0371144,MA0047.2;1.00451,MA0112.2;0.36627,MA0065.2;0.137429,MA0150.1;0.486798,MA0151.1;0,MA0152.1;0.156949,MA0153.1;0.262447,MA0154.1;0.904518,MA0155.1;0.0139735,MA0156.1;0.223011,MA0157.1;0.650787,MA0158.1;0,MA0159.1;0.657804,MA0160.1;1.62657,MA0161.1;0,MA0162.1;2.67883e-07,MA0163.1;0.000629782,MA0164.1;0.578691,MA0080.2;0.997373,MA0018.2;0.0359748,MA0099.2;1.35763,MA0079.2;0,MA0102.2;0.736131,MA0258.1;1.08932,MA0259.1;0.149359,MA0442.1;0
}}
}}

Revision as of 11:18, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:30557698..30557717,-p@chr10:30557698..30557717
-
Mm9::chr10:63117936..63117942,+p@chr10:63117936..63117942
+
Mm9::chr11:88702790..88702805,-p5@Akap1
Mm9::chr13:45825796..45825807,+p@chr13:45825796..45825807
+
Mm9::chr14:102283344..102283353,+p26@Lmo7
Mm9::chr14:55592627..55592655,-p@chr14:55592627..55592655
-
Mm9::chr14:55592659..55592677,-p@chr14:55592659..55592677
-
Mm9::chr14:55592682..55592691,-p@chr14:55592682..55592691
-
Mm9::chr14:55592874..55592887,-p@chr14:55592874..55592887
-
Mm9::chr14:55593556..55593569,-p@chr14:55593556..55593569
-
Mm9::chr14:55593594..55593605,-p@chr14:55593594..55593605
-
Mm9::chr14:55594807..55594837,+p@chr14:55594807..55594837
+
Mm9::chr14:55594816..55594843,-p1@Mir208b
Mm9::chr14:55594906..55594919,-p2@Mir208b
Mm9::chr14:55597498..55597518,-p@chr14:55597498..55597518
-
Mm9::chr14:55601007..55601013,+p@chr14:55601007..55601013
+
Mm9::chr14:55602120..55602145,-p@chr14:55602120..55602145
-
Mm9::chr14:55602153..55602164,-p@chr14:55602153..55602164
-
Mm9::chr14:55602185..55602196,-p@chr14:55602185..55602196
-
Mm9::chr14:55602212..55602241,-p@chr14:55602212..55602241
-
Mm9::chr14:55602248..55602254,-p@chr14:55602248..55602254
-
Mm9::chr14:55602387..55602410,+p@chr14:55602387..55602410
+
Mm9::chr14:55602438..55602483,-p@chr14:55602438..55602483
-
Mm9::chr14:55602607..55602628,-p@chr14:55602607..55602628
-
Mm9::chr14:55603569..55603586,-p@chr14:55603569..55603586
-
Mm9::chr14:55603590..55603599,-p@chr14:55603590..55603599
-
Mm9::chr14:55603637..55603654,-p@chr14:55603637..55603654
-
Mm9::chr14:55603961..55603979,-p@chr14:55603961..55603979
-
Mm9::chr14:55603984..55603995,-p@chr14:55603984..55603995
-
Mm9::chr14:55607937..55607949,-p@chr14:55607937..55607949
-
Mm9::chr14:55607964..55607977,-p@chr14:55607964..55607977
-
Mm9::chr14:55608204..55608213,-p@chr14:55608204..55608213
-
Mm9::chr14:55609205..55609219,-p@chr14:55609205..55609219
-
Mm9::chr14:55609568..55609585,+p@chr14:55609568..55609585
+
Mm9::chr14:55609790..55609804,-p@chr14:55609790..55609804
-
Mm9::chr14:55610436..55610483,-p@chr14:55610436..55610483
-
Mm9::chr14:55612172..55612191,-p@chr14:55612172..55612191
-
Mm9::chr14:55612194..55612219,-p@chr14:55612194..55612219
-
Mm9::chr14:55612222..55612258,-p@chr14:55612222..55612258
-
Mm9::chr14:55613118..55613152,-p@chr14:55613118..55613152
-
Mm9::chr16:38713541..38713552,-p13@Arhgap31
Mm9::chr17:12845507..12845518,-p@chr17:12845507..12845518
-
Mm9::chr17:12845536..12845545,-p@chr17:12845536..12845545
-
Mm9::chr17:12845605..12845619,-p@chr17:12845605..12845619
-
Mm9::chr17:81870622..81870634,-p@chr17:81870622..81870634
-
Mm9::chr17:81997612..81997620,-p@chr17:81997612..81997620
-
Mm9::chr17:82003607..82003626,-p@chr17:82003607..82003626
-
Mm9::chr17:82021802..82021805,-p@chr17:82021802..82021805
-
Mm9::chr17:82124931..82124935,-p@chr17:82124931..82124935
-
Mm9::chr17:82130225..82130232,-p@chr17:82130225..82130232
-
Mm9::chr17:82130245..82130263,-p@chr17:82130245..82130263
-
Mm9::chr17:82130855..82130867,-p@chr17:82130855..82130867
-
Mm9::chr17:82132312..82132315,-p@chr17:82132312..82132315
-
Mm9::chr1:137698276..137698287,+p@chr1:137698276..137698287
+
Mm9::chr2:35115173..35115177,+p@chr2:35115173..35115177
+
Mm9::chr3:116510798..116510807,-p14@Agl
Mm9::chr3:19579033..19579042,+p@chr3:19579033..19579042
+
Mm9::chr3:40486470..40486504,-p@chr3:40486470..40486504
-
Mm9::chr6:119165352..119165361,+p6@Dcp1b
Mm9::chr6:119165367..119165378,+p2@Dcp1b
Mm9::chr7:129190415..129190425,-p@chr7:129190415..129190425
-
Mm9::chr7:129190428..129190447,-p@chr7:129190428..129190447
-
Mm9::chr7:19751468..19751483,-p1@Gipr


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004133glycogen debranching enzyme activity0.00777954308880732
GO:0016519gastric inhibitory peptide receptor activity0.00777954308880732
GO:0042805actinin binding0.0103718716591627
GO:0001636corticotrophin-releasing factor gastric inhibitory peptide-like receptor activity0.0116673966699664



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.70472e-09
MA0004.10.312918
MA0006.10.399798
MA0007.10.487115
MA0009.10.167202
MA0014.15.61396e-08
MA0017.10.188413
MA0019.10.958912
MA0024.10.142816
MA0025.10.322299
MA0027.11.62582
MA0028.10.00127942
MA0029.10.410714
MA0030.10.419422
MA0031.11.22969
MA0038.11.00729
MA0040.10.174484
MA0041.10.00482745
MA0042.10.0233666
MA0043.10.22679
MA0046.10.18846
MA0048.10.594953
MA0050.10.0793552
MA0051.10.165402
MA0052.11.60916
MA0055.10.953283
MA0056.10
MA0057.10.0118969
MA0058.10.0674925
MA0059.10.500361
MA0060.10.0063913
MA0061.10.0338921
MA0063.10
MA0066.10.0375122
MA0067.10.407866
MA0068.10.000578652
MA0069.11.01659
MA0070.10.173723
MA0071.12.20942
MA0072.10.504343
MA0073.15.43695e-11
MA0074.10.0288039
MA0076.10.00237158
MA0077.10.156447
MA0078.11.16315
MA0081.10.579058
MA0083.10.226272
MA0084.10.68852
MA0087.10.198825
MA0088.10.224148
MA0089.10
MA0090.10.249242
MA0091.10.17097
MA0092.10.43504
MA0093.10.300182
MA0095.10
MA0098.10
MA0100.10.0262954
MA0101.10.0835392
MA0103.11.02975
MA0105.10.0226861
MA0106.10.203708
MA0107.10.0415291
MA0108.20.087191
MA0109.10
MA0111.10.00960049
MA0113.11.08646
MA0114.10.140853
MA0115.10.228622
MA0116.10.0697202
MA0117.11.76927
MA0119.10.778986
MA0122.10.220538
MA0124.10.3661
MA0125.10.310357
MA0130.10
MA0131.10.0760282
MA0132.10
MA0133.10
MA0135.10.25106
MA0136.10.910725
MA0139.10.0264306
MA0140.10.801702
MA0141.14.66752
MA0142.10.354746
MA0143.11.61393
MA0144.10.0119614
MA0145.10.0892924
MA0146.10.000402934
MA0147.10.0913526
MA0148.10.174659
MA0149.10.00528973
MA0062.20.000170691
MA0035.21.1869
MA0039.22.35178e-11
MA0138.27.0191
MA0002.21.74025
MA0137.20.241865
MA0104.20.0371144
MA0047.21.00451
MA0112.20.36627
MA0065.20.137429
MA0150.10.486798
MA0151.10
MA0152.10.156949
MA0153.10.262447
MA0154.10.904518
MA0155.10.0139735
MA0156.10.223011
MA0157.10.650787
MA0158.10
MA0159.10.657804
MA0160.11.62657
MA0161.10
MA0162.12.67883e-07
MA0163.10.000629782
MA0164.10.578691
MA0080.20.997373
MA0018.20.0359748
MA0099.21.35763
MA0079.20
MA0102.20.736131
MA0258.11.08932
MA0259.10.149359
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:172&oldid=2573567"