NonredundantMotifs:20: Difference between revisions
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|entrez_gene_id=10691
|motif_cluster_2013_march_motif_members= /SWISSREGULON:JUN.p2~CREB1.p2~ATF5_CREB3.p2~ATF4.p2 /HOMER:JUND_K562-JunD-ChIP-Seq~JUN_motifB;...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=10691 | |entrez_gene_id=10691 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:JUN.p2~CREB1.p2~ATF5_CREB3.p2~ATF4.p2 /HOMER:JUND_K562-JunD-ChIP-Seq~JUN_motifB;K562-cJun-ChIP-Seq | |motif_cluster_2013_march_motif_members= /JASPAR:MA0018.2;CREB1 /HOCOMOCO:ATF3_f1~E4F1_f1~ATF2+ATF4_f1~ATF1_si~CREM_f1~CREB1_f1 /SWISSREGULON:JUN.p2~CREB1.p2~ATF5_CREB3.p2~ATF4.p2 /HOMER:JUND_K562-JunD-ChIP-Seq~JUN_motifB;K562-cJun-ChIP-Seq /UNIPROBE:Jundm2_primary;SCI09~Gmeb1_primary;SCI09~Atf1_primary;SCI09 | ||
|name=known20 | |name=known20 | ||
|representative_motif_db=UNIPROBE | |representative_motif_db=UNIPROBE | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known20
- db :UNIPROBE
- Id :Gmeb1_primary
- name :SCI09
- score :0.6275573267230993
- External refs:
- Internal refs:
| Motif matrix | |
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Sub Motif Members
