NonredundantMotifs:29: Difference between revisions
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|entrez_gene_id=2908
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NR3C1.p2~AR.p2 /HOMER:NR3C1_RAW264.7-GRE-ChIP-Seq~AR_LNCAP-AR-ChIP-Seq~NR3C1_A549...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=2908 | |entrez_gene_id=2908 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NR3C1.p2~AR.p2 /HOMER:NR3C1_RAW264.7-GRE-ChIP-Seq~AR_LNCAP-AR-ChIP-Seq~NR3C1_A549-GR-ChIP- | |motif_cluster_2013_march_motif_members= /JASPAR:MA0113.1;NR3C1~MA0007.1;Ar /HOCOMOCO:ANDR_do~GCR_do~GCR_si~PRGR_do~PRGR_f1 /SWISSREGULON:NR3C1.p2~AR.p2 /HOMER:NR3C1_RAW264.7-GRE-ChIP-Seq~AR_LNCAP-AR-ChIP-Seq~NR3C1_A549-GR-ChIP-Seq | ||
|name=known29 | |name=known29 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known29
- db :HOCOMOCO
- Id :GCR_do
- name :
- score :0.22254308897291314
- External refs:
- Internal refs:
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Sub Motif Members
