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NonredundantMotifs:58: Difference between revisions

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(Created page with "{{Known_motif |entrez_gene_id=190 |motif_cluster_2013_march_motif_members= /SWISSREGULON:MZF1.p2 /JASPAR:MA0057.1;MZF1_5-13~MA0056.1;MZF1_1-4 /HOCOMOCO:NR0B1_si~MZF1_f1 ...")
 
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{{Known_motif
{{Known_motif
|entrez_gene_id=190
|entrez_gene_id=190
|motif_cluster_2013_march_motif_members= /SWISSREGULON:MZF1.p2 /JASPAR:MA0057.1;MZF1_5-13~MA0056.1;MZF1_1-4 /HOCOMOCO:NR0B1_si~MZF1_f1 /UNIPROBE:Egr1_secondary;SCI09
|motif_cluster_2013_march_motif_members= /JASPAR:MA0057.1;MZF1_5-13~MA0056.1;MZF1_1-4 /HOCOMOCO:NR0B1_si~MZF1_f1 /SWISSREGULON:MZF1.p2 /UNIPROBE:Egr1_secondary;SCI09
|name=known58
|name=known58
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO

Revision as of 16:20, 1 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known58
  • db :HOCOMOCO
  • Id :NR0B1_si
  • name  :
  • score :3.268553894711853
  • External refs:
EntrezGene:190
UniProt:190

  • Internal refs:
EntrezGene:190


Motif matrix
{{{PWM}}}

Sub Motif Members