NonredundantMotifs:27

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :known27
• db :HOMER
• Id :RELA_GM12787-p65-ChIP-Seq
• name  :
• score :0.6841308706017131
  
• External refs:

EntrezGene:5970
UniProt:5970

• Internal refs:

EntrezGene:5970

Motif matrix
PO A C G T 1 3324 801 1697 2790 2 844 43 6261 1464 3 17 9 8552 34 4 9 9 8310 284 5 3049 9 5356 198 6 5177 1188 1481 766 7 3057 620 138 4797 8 267 121 146 8078 9 9 1662 9 6932 10 9 7027 9 1567 11 17 8388 9 198 12 2248 5235 164 965