NonredundantMotifs:36: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;11.09350127307007;19.55671508738457;22.621106778155603;4.716253700384445!2;57.9875768389947;0.0;0.0;0.0!3;0.0;0.0;57.9875768389947;0.0!4;0.0;0.0;57.9875768389947;0.0!5;0.0;0.0;0.0;57.9875768389947!6;0.0;57.9875768389947;0.0;0.0!7;57.9875768389947;0.0;0.0;0.0 | |||
|entrez_gene_id=5914 | |entrez_gene_id=5914 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:RARA_f1~THA_f1~NR1I2_f2~THA_f2~RARB_f1~NR1I3_f2~RXRB_f1~THB_f1~ | |motif_cluster_2013_march_motif_members= /HOMER:NR1H2_BLRP(RAW)-LXRb-ChIP-Seq /HOCOMOCO:RARA_f1~THA_f1~NR1I2_f2~THA_f2~RARB_f1~NR1I3_f2~RXRB_f1~THB_f1~THB_do | ||
|name=known36 | |name=known36 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 10:46, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known36
- db :HOCOMOCO
- Id :RARA_f1
- name :
- score :0.2788936316060929
- External refs:
- Internal refs:
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Sub Motif Members
