NonredundantMotifs:71: Difference between revisions
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|entrez_gene_id=5449
|motif_cluster_2013_march_motif_members= /HOCOMOCO:PIT1_f1~PO3F2_si /UNIPROBE:Sox8_secondary;SCI09~Sox17_secondary;SCI09
|name=known71
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{{Known_motif | {{Known_motif | ||
|PWM=P0;A;C;G;T!1;3.0896624472573873;16.79430379746835;4.558016877637143;13.368143459915627!2;8.810126582278482;5.38396624472576;1.7130801687763726;21.902953586497915!3;15.172995780590723;16.886075949367104;4.772151898734191;0.9789029535865001!4;24.96202531645569;4.037974683544292;0.0;8.810126582278482!5;3.1814345991561206;0.0;0.0;34.628691983122394!6;0.611814345991562;0.0;37.19831223628693;0.0!7;21.535864978902964;6.240506329113913;5.139240506329102;4.894514767932482!8;34.75105485232069;0.0;0.0;3.059071729957807!9;10.278481012658244;0.0;1.8354430379746827;25.69620253164559!10;33.28270042194093;0.0;1.223628691983124;3.303797468354431!11;9.911392405063294;0.0;0.0;27.898734177215207!12;20.189873417721536;0.0;5.873417721519001;11.746835443037964!13;6.301687763713096;11.808016877637147;4.955696202531666;14.744725738396628 | |||
|entrez_gene_id=5449 | |entrez_gene_id=5449 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /UNIPROBE:Sox8_secondary;SCI09~Sox17_secondary;SCI09 /HOCOMOCO:PIT1_f1~PO3F2_si | ||
|name=known71 | |name=known71 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 10:46, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known71
- db :HOCOMOCO
- Id :PIT1_f1
- name :
- score :0.06673532507808184
- External refs:
- Internal refs:
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Sub Motif Members
