Personal tools

NonredundantMotifs:45: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 2: Line 2:
|PWM=P0;A;C;G;T!1;2.712189616252821;9.66027088036117;9.965011286681722;4.662528216704289!2;2.803611738148992;0.0;7.557562076749425;16.638826185101586!3;0.8532731376975159;0.8532731376975159;20.966139954853283;4.327313769751698!4;0.0;26.57336343115124;0.42663656884875933;0.0!5;2.498871331828443;0.0;0.0;24.50112866817156!6;0.0;2.681715575620766;24.318284424379247;0.0!7;19.32054176072234;2.803611738148992;0.42663656884875933;4.449209932279908!8;4.022573363431146;16.029345372460508;3.717832957110621;3.2302483069977543!9;0.0;10.300225733634313;9.812641083521445;6.887133182844243!10;8.776523702031605;12.37246049661399;0.9751693002257339;4.87584650112867!11;4.510158013544014;10.178329571106103;3.169300225733622;9.142212189616263!12;0.9751693002257339;4.144469525959356;18.101580135440184;3.778781038374726!13;2.1941309255079013;16.638826185101586;1.82844243792325;6.338600451467271!14;17.91873589164784;2.255079006772009;2.1941309255079013;4.632054176072223!15;6.643340857787823;3.9006772009029356;13.713318284424382;2.7426636568848872!16;2.255079006772009;14.566591422121904;1.82844243792325;8.349887133182845!17;6.826185101580137;10.726862302483074;0.0;9.446952595936787!18;4.022573363431146;3.5959367945823844;2.803611738148992;16.577878103837477!19;2.255079006772009;9.264108352144472;2.1941309255079013;13.28668171557562!20;3.047404063205412;17.55304740406321;2.3769751693002243;4.022573363431146!21;6.765237020316033;8.593679458239263;8.7155756207675;2.925507900677202
|PWM=P0;A;C;G;T!1;2.712189616252821;9.66027088036117;9.965011286681722;4.662528216704289!2;2.803611738148992;0.0;7.557562076749425;16.638826185101586!3;0.8532731376975159;0.8532731376975159;20.966139954853283;4.327313769751698!4;0.0;26.57336343115124;0.42663656884875933;0.0!5;2.498871331828443;0.0;0.0;24.50112866817156!6;0.0;2.681715575620766;24.318284424379247;0.0!7;19.32054176072234;2.803611738148992;0.42663656884875933;4.449209932279908!8;4.022573363431146;16.029345372460508;3.717832957110621;3.2302483069977543!9;0.0;10.300225733634313;9.812641083521445;6.887133182844243!10;8.776523702031605;12.37246049661399;0.9751693002257339;4.87584650112867!11;4.510158013544014;10.178329571106103;3.169300225733622;9.142212189616263!12;0.9751693002257339;4.144469525959356;18.101580135440184;3.778781038374726!13;2.1941309255079013;16.638826185101586;1.82844243792325;6.338600451467271!14;17.91873589164784;2.255079006772009;2.1941309255079013;4.632054176072223!15;6.643340857787823;3.9006772009029356;13.713318284424382;2.7426636568848872!16;2.255079006772009;14.566591422121904;1.82844243792325;8.349887133182845!17;6.826185101580137;10.726862302483074;0.0;9.446952595936787!18;4.022573363431146;3.5959367945823844;2.803611738148992;16.577878103837477!19;2.255079006772009;9.264108352144472;2.1941309255079013;13.28668171557562!20;3.047404063205412;17.55304740406321;2.3769751693002243;4.022573363431146!21;6.765237020316033;8.593679458239263;8.7155756207675;2.925507900677202
|entrez_gene_id=389692
|entrez_gene_id=389692
|motif_cluster_2013_march_motif_members= /SWISSREGULON:MAFB.p2 /JASPAR:MA0117.1;Mafb /HOMER:MAFA_Islet-MafA-ChIP-Seq(GSE30298) /UNIPROBE:Mafb_primary;SCI09~Mafk_primary;SCI09 /HOCOMOCO:MAFA_f1~MAFB_f1~MAF_f1
|motif_cluster_2013_march_motif_members= /JASPAR:MA0117.1;Mafb /SWISSREGULON:MAFB.p2 /HOMER:MAFA_Islet-MafA-ChIP-Seq(GSE30298) /UNIPROBE:Mafb_primary;SCI09~Mafk_primary;SCI09 /HOCOMOCO:MAFA_f1~MAFB_f1~MAF_f1
|name=known45
|name=known45
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known45
  • db :HOCOMOCO
  • Id :MAFA_f1
  • name  :
  • score :1.339045858542075
  • External refs:
EntrezGene:389692
UniProt:389692

  • Internal refs:
EntrezGene:389692


Motif matrix
P0ACGT
12.7121896162528219.660270880361179.9650112866817224.662528216704289
22.8036117381489920.07.55756207674942516.638826185101586
30.85327313769751590.853273137697515920.9661399548532834.327313769751698
40.026.573363431151240.426636568848759330.0
52.4988713318284430.00.024.50112866817156
60.02.68171557562076624.3182844243792470.0
719.320541760722342.8036117381489920.426636568848759334.449209932279908
84.02257336343114616.0293453724605083.7178329571106213.2302483069977543
90.010.3002257336343139.8126410835214456.887133182844243
108.77652370203160512.372460496613990.97516930022573394.87584650112867
114.51015801354401410.1783295711061033.1693002257336229.142212189616263
120.97516930022573394.14446952595935618.1015801354401843.778781038374726
132.194130925507901316.6388261851015861.828442437923256.338600451467271
1417.918735891647842.2550790067720092.19413092550790134.632054176072223
156.6433408577878233.900677200902935613.7133182844243822.7426636568848872
162.25507900677200914.5665914221219041.828442437923258.349887133182845
176.82618510158013710.7268623024830740.09.446952595936787
184.0225733634311463.59593679458238442.80361173814899216.577878103837477
192.2550790067720099.2641083521444722.194130925507901313.28668171557562
203.04740406320541217.553047404063212.37697516930022434.022573363431146
216.7652370203160338.5936794582392638.71557562076752.925507900677202

Sub Motif Members

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=NonredundantMotifs:45&oldid=2578438"