NonredundantMotifs:62: Difference between revisions
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{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;19.782949;79.876284;111.279923;249.562657!2;3.565869;218.368024;166.003663;72.564257!3;8.815464;26.298415;13.296325;412.091609!4;2.68771;19.83034;437.983763;0!5;1.749333;441.841417;8.397633;8.51343!6;270.963155;15.814212;171.065183;2.659263!7;2.588562;440.205163;14.976414;2.731674!8;106.363753;223.593283;16.704678;113.840099!9;0.895053;442.149574;8.241918;9.215268!10;101.247874;52.489408;271.926599;34.837932!11;5.439971;46.735555;386.505788;21.820499!12;25.409366;380.704494;50.949045;3.438908!13;41.2458;345.001006;51.818465;22.436542!14;3.509096;375.838249;54.254978;26.89949 | |PWM=PO;A;C;G;T!1;19.782949;79.876284;111.279923;249.562657!2;3.565869;218.368024;166.003663;72.564257!3;8.815464;26.298415;13.296325;412.091609!4;2.68771;19.83034;437.983763;0!5;1.749333;441.841417;8.397633;8.51343!6;270.963155;15.814212;171.065183;2.659263!7;2.588562;440.205163;14.976414;2.731674!8;106.363753;223.593283;16.704678;113.840099!9;0.895053;442.149574;8.241918;9.215268!10;101.247874;52.489408;271.926599;34.837932!11;5.439971;46.735555;386.505788;21.820499!12;25.409366;380.704494;50.949045;3.438908!13;41.2458;345.001006;51.818465;22.436542!14;3.509096;375.838249;54.254978;26.89949 | ||
|entrez_gene_id= | |entrez_gene_id=MTF1 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:MTF1.p2 /UNIPROBE:Gm397_primary;SCI09~Zscan4_primary;SCI09~Mtf1_primary;SCI09 /HOCOMOCO:MTF1_f1 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:MTF1.p2 /UNIPROBE:Gm397_primary;SCI09~Zscan4_primary;SCI09~Mtf1_primary;SCI09 /HOCOMOCO:MTF1_f1 | ||
|name=known62 | |name=known62 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=MTF1.p2 | |representative_motif_id=MTF1.p2 | ||
|representative_motif_name= | |representative_motif_name=MTF1 | ||
|score=3.676152810585477 | |score=3.676152810585477 | ||
|uniprot_entry_name= | |uniprot_entry_name=MTF1 | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known62
- db :SWISSREGULON
- Id :MTF1.p2
- name :MTF1
- score :3.676152810585477
- External refs:
- Internal refs:
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Sub Motif Members
