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{{#info:<br>Analyst:  Ivan Kulakovskiy <br>
{{#info:<br>Analyst:  Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>
Date: May 2013
May 2013, Collection Name: non-redundant
Collection Name: non-redundant
Analysis information: 208 clusters of known motifs were produced by MACRO-APE [http://autosome.ru/macroape/  click for the link]
 
Analysis information:
  Analyst: Ivan Kulakovskiy, Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon
    208 clusters of known motifs were produced by MACRO-APE [http://autosome.ru/macroape/  click for the link]
     using the general phase1 motif clustering procedure applied for known motif collections.
     using the general phase1 motif clustering procedure applied for known motif collections.
<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selectedbased on motif-promoter correlation values.For each cluster only motifs with an average distance to other members not greater than mean+SD were considered as representatives.
<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to other members not greater than mean+SD were considered as representatives.
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Revision as of 16:45, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: non-redundantAnalysis information: 208 clusters of known motifs were produced by MACRO-APE click for the link using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to other members not greater than mean+SD were considered as representatives.

  • Name  :{{{name}}}
  • db  :{{{representative_motif_db}}}
  • Id  :{{{representative_motif_id}}}
  • name  :{{{representative_motif_name}}}
  • score  :{{{score}}}
  • Entry name : {{{uniprot_entry_name}}}
  • Entrez GeneID :{{{entrez_gene_id}}}


Motif matrix
{{{PWM}}}

Sub Motif Members