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NonredundantMotifs:29: Difference between revisions

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|PWM=P0;A;C;G;T!1;1129.59174000961;904.2365566987804;1807.362866734603;281.0045628124061!2;2413.1670172035383;43.724521997588134;1641.0541653725297;24.250021681728235!3;521.3538175078652;80.96553646894833;3467.3371930271514;52.53917925139312!4;2816.4674474271515;284.1860912204384;822.1656017693597;199.37658583842457!5;3847.6975675045255;50.09635718951012;111.13454891187209;113.26725264946202!6;240.9293411573285;2963.2070020338206;832.4993895875741;85.55999347664753!7;3338.7139791267177;113.99177355345608;367.26423995353167;302.22573362166344!8;791.5442504458142;485.08515290102264;1594.9308503364755;1250.6354725720855!9;1520.140159950709;779.228552986429;801.1516978245954;1021.6753154936646!10;1224.3423375150708;1299.9942244578958;1230.1570743392404;367.702089943193!11;1299.273462866743;580.1304511700988;366.1387809547177;1876.6530312638354!12;461.22541592044746;246.0137713224433;3070.113571803517;344.8429672089572!13;588.5894133233296;345.9526174770324;957.8890792931626;2229.764616161862!14;813.4648676672143;1213.1926900810154;906.9344593230876;1188.6037091840824!15;408.03273100331745;2749.1017855220593;559.1303908958896;405.9308188341049!16;1057.156225364204;1403.753823720879;507.7708250560997;1153.5148521142146!17;1371.7429648377574;427.69185104682543;1375.5279260593618;947.2329843114555!18;1130.4703615085225;566.3177490229859;1699.4526160490173;725.9549996748707
|PWM=P0;A;C;G;T!1;1129.59174000961;904.2365566987804;1807.362866734603;281.0045628124061!2;2413.1670172035383;43.724521997588134;1641.0541653725297;24.250021681728235!3;521.3538175078652;80.96553646894833;3467.3371930271514;52.53917925139312!4;2816.4674474271515;284.1860912204384;822.1656017693597;199.37658583842457!5;3847.6975675045255;50.09635718951012;111.13454891187209;113.26725264946202!6;240.9293411573285;2963.2070020338206;832.4993895875741;85.55999347664753!7;3338.7139791267177;113.99177355345608;367.26423995353167;302.22573362166344!8;791.5442504458142;485.08515290102264;1594.9308503364755;1250.6354725720855!9;1520.140159950709;779.228552986429;801.1516978245954;1021.6753154936646!10;1224.3423375150708;1299.9942244578958;1230.1570743392404;367.702089943193!11;1299.273462866743;580.1304511700988;366.1387809547177;1876.6530312638354!12;461.22541592044746;246.0137713224433;3070.113571803517;344.8429672089572!13;588.5894133233296;345.9526174770324;957.8890792931626;2229.764616161862!14;813.4648676672143;1213.1926900810154;906.9344593230876;1188.6037091840824!15;408.03273100331745;2749.1017855220593;559.1303908958896;405.9308188341049!16;1057.156225364204;1403.753823720879;507.7708250560997;1153.5148521142146!17;1371.7429648377574;427.69185104682543;1375.5279260593618;947.2329843114555!18;1130.4703615085225;566.3177490229859;1699.4526160490173;725.9549996748707
|entrez_gene_id=2908
|entrez_gene_id=2908
|motif_cluster_2013_march_motif_members= /JASPAR:MA0113.1;NR3C1~MA0007.1;Ar /SWISSREGULON:NR3C1.p2~AR.p2 /HOMER:NR3C1_RAW264.7-GRE-ChIP-Seq~AR_LNCAP-AR-ChIP-Seq~NR3C1_A549-GR-ChIP-Seq /HOCOMOCO:ANDR_do~GCR_do~GCR_si~PRGR_do~PRGR_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:PRGR_f1~GCR_si~GCR_do~PRGR_do~ANDR_do /HOMER:NR3C1_A549-GR-ChIP-Seq~AR_LNCAP-AR-ChIP-Seq~NR3C1_RAW264.7-GRE-ChIP-Seq /JASPAR:MA0007.1;Ar~MA0113.1;NR3C1 /SWISSREGULON:NR3C1.p2~AR.p2
|name=known29
|name=non-redundant29
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=GCR_do
|representative_motif_id=GCR_do
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:46, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant29
  • db :HOCOMOCO
  • Id :GCR_do
  • name  :
  • score :0.22254308897291314
  • External refs:
EntrezGene:2908
UniProt:2908

  • Internal refs:
EntrezGene:2908


Motif matrix
P0ACGT
11129.59174000961904.23655669878041807.362866734603281.0045628124061
22413.167017203538343.7245219975881341641.054165372529724.250021681728235
3521.353817507865280.965536468948333467.337193027151452.53917925139312
42816.4674474271515284.1860912204384822.1656017693597199.37658583842457
53847.697567504525550.09635718951012111.13454891187209113.26725264946202
6240.92934115732852963.2070020338206832.499389587574185.55999347664753
73338.7139791267177113.99177355345608367.26423995353167302.22573362166344
8791.5442504458142485.085152901022641594.93085033647551250.6354725720855
91520.140159950709779.228552986429801.15169782459541021.6753154936646
101224.34233751507081299.99422445789581230.1570743392404367.702089943193
111299.273462866743580.1304511700988366.13878095471771876.6530312638354
12461.22541592044746246.01377132244333070.113571803517344.8429672089572
13588.5894133233296345.9526174770324957.88907929316262229.764616161862
14813.46486766721431213.1926900810154906.93445932308761188.6037091840824
15408.032731003317452749.1017855220593559.1303908958896405.9308188341049
161057.1562253642041403.753823720879507.77082505609971153.5148521142146
171371.7429648377574427.691851046825431375.5279260593618947.2329843114555
181130.4703615085225566.31774902298591699.4526160490173725.9549996748707

Sub Motif Members

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