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NonredundantMotifs:58: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.2072368421052633;2.220394736842101;5.536184210526312;1.036184210526312!2;3.0789473684210553;5.921052631578945;0.0;0.0!3;0.947368421052633;0.0;8.052631578947368;0.0!4;1.065789473684211;0.0;3.197368421052633;4.736842105263156!5;0.0;0.0;9.0;0.0!6;0.0;1.776315789473688;7.223684210526312;0.0!7;1.894736842105266;0.0;6.157894736842102;0.947368421052633!8;6.868421052631579;1.065789473684211;1.065789473684211;0.0!9;1.776315789473688;3.3157894736842106;3.907894736842101;0.0!10;5.092105263157898;0.0;3.907894736842101;0.0
|PWM=PO;A;C;G;T!1;74.346881;23.638278;531.934131;115.189099!2;104.040042;30.259929;567.387683999999;43.420734!3;141.755287;11.718362;563.878756;27.755984!4;69.91805;86.603206;462.436507;126.150626!5;2.235757;3.683027;657.349422;81.840183!6;680.677063;5.842726;58.5886;0!7;26.894046;0.909082;672.861502;44.443759!8;0.862777;1.374751;739.057741;3.81312!9;46.095866;3.718199;689.606587;5.687737!10;31.262764;0;696.658737;17.186888!11;178.855473;132.650259;419.013691;14.588966!12;561.209931;4.967734;130.390074;48.54065!13;461.840303;76.932362;195.744125;10.591599
|entrez_gene_id=190
|entrez_gene_id=MZF1
|motif_cluster_2013_march_motif_members= /JASPAR:MA0057.1;MZF1_5-13~MA0056.1;MZF1_1-4 /SWISSREGULON:MZF1.p2 /UNIPROBE:Egr1_secondary;SCI09 /HOCOMOCO:NR0B1_si~MZF1_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:NR0B1_si~MZF1_f1 /JASPAR:MA0056.1;MZF1_1-4~MA0057.1;MZF1_5-13 /SWISSREGULON:MZF1.p2 /UNIPROBE:Egr1_secondary;SCI09
|name=known58
|name=non-redundant58
|representative_motif_db=HOCOMOCO
|representative_motif_db=SWISSREGULON
|representative_motif_id=NR0B1_si
|representative_motif_id=MZF1.p2
|representative_motif_name=  
|representative_motif_name=MZF1
|score=3.268553894711853
|score=2.5260751625869733
|uniprot_entry_name=NR0B1_HUMAN
|uniprot_entry_name=MZF1
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant58
  • db :SWISSREGULON
  • Id :MZF1.p2
  • name :MZF1
  • score :2.5260751625869733
  • External refs:
EntrezGene:MZF1
UniProt:MZF1

  • Internal refs:
EntrezGene:MZF1


Motif matrix
POACGT
174.34688123.638278531.934131115.189099
2104.04004230.259929567.38768399999943.420734
3141.75528711.718362563.87875627.755984
469.9180586.603206462.436507126.150626
52.2357573.683027657.34942281.840183
6680.6770635.84272658.58860
726.8940460.909082672.86150244.443759
80.8627771.374751739.0577413.81312
946.0958663.718199689.6065875.687737
1031.2627640696.65873717.186888
11178.855473132.650259419.01369114.588966
12561.2099314.967734130.39007448.54065
13461.84030376.932362195.74412510.591599

Sub Motif Members

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