FFCP PHASE1:Hg19::chr10:79397557..79397575,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3778|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6284|TSSclassifier=S|UniProt=Q12791,Q59FH2|association_with_transcript=1bp_to_NM_001014797,NM_001161352,NM_001161353,NM_002247,uc001jxj.2,uc001jxm.2,uc001jxn.2,uc001jxo.2,uc001jxq.2,uc001jxs.3,uc001jxt.3_5end|description=CAGE_peak_1_at_KCNMA1_5end|id=chr10:79397557..79397575,-|ontology_enrichment_celltype=CL:0000055!6.10e-17!180;CL:0000057!1.43e-09!75|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000057,5.35e-09,76|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!8.05e-17!365;UBERON:0000468!4.52e-14!659;UBERON:0000481!3.96e-13!347;UBERON:0000467!6.35e-13!625;UBERON:0000480!1.16e-12!626;UBERON:0002050!1.44e-12!605;UBERON:0005423!1.44e-12!605;UBERON:0000923!3.55e-12!604;UBERON:0005291!3.55e-12!604;UBERON:0006598!3.55e-12!604;UBERON:0002532!3.55e-12!604;UBERON:0000922!4.59e-12!612;UBERON:0000062!3.44e-11!511;UBERON:0004121!7.94e-11!169;UBERON:0000924!4.75e-10!173;UBERON:0006601!4.75e-10!173;UBERON:0000033!6.74e-09!123;UBERON:0003102!1.27e-08!95;UBERON:0000153!3.56e-08!129;UBERON:0007811!3.56e-08!129;UBERON:0000914!6.30e-08!83;UBERON:0002329!6.30e-08!83;UBERON:0003077!6.30e-08!83;UBERON:0003059!6.30e-08!83;UBERON:0007282!6.30e-08!83;UBERON:0009618!6.30e-08!83;UBERON:0007285!6.30e-08!83;UBERON:0002100!1.69e-07!216;UBERON:0007023!4.19e-07!115;UBERON:0000479!4.53e-07!787|ontology_enrichment_uberon_v019=UBERON:0001434;4.32e-07;36|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.69e-10,171;UBERON:0000924,4.69e-10,171;UBERON:0006601,4.69e-10,171;UBERON:0000922,2.60e-08,592;UBERON:0003102,3.88e-08,99;UBERON:0005423,4.56e-08,581;UBERON:0002050,1.18e-07,564;UBERON:0000923,2.27e-07,560;UBERON:0010316,2.27e-07,560;UBERON:0005291,2.27e-07,560;UBERON:0006598,2.27e-07,560;UBERON:0010317,2.27e-07,560;UBERON:0002532,2.27e-07,560;UBERON:0010314,5.50e-07,132|phase1_expression=0.726713517082227,0.856402095563933,1.69145284915165,3.00219895059391,4.02264984984559,0,0,12.6343974685366,0,5.16041266653169,4.18680700783456,44.5620399145551,19.5187563889056,14.6044296492855,22.8664189252262,1.34465029290355,0.602694528023977,1.46062018077475,1.95173119516203,10.2190478203734,20.6040698156696,3.76145665773705,13.4530913951597,36.4085970693872,25.9873263961242,4.04991050464142,5.09023654589664,3.38456359648821,0,0,1.08371286321253,2.75826367343678,17.7711492079168,21.4457325896737,0,2.70121541726101,0,0,0,0,124.944834625878,157.736215351243,117.454458841189,0.290796477559129,0.755751887377619,1.4555043671269,0,0.411167888021826,0.619412741790207,0,0,0,0.344745680736619,0,0,0,0.545812300115692,1.12361742222542,0.306083892370903,0,0,0,0,0.426224750532694,0.290209238628584,0,0,0,0,0.434377689410233,1.21079900526674,0,0.316462387440884,0,0.425208599930087,0.628975936525128,0,0,0,0,0.39783335439818,0.730656615058536,5.27988733383968,0.546138611262131,1.77901850772711,0.853460445133014,1.20118796110804,1.14950487990897,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,46.9870898099936,44.6190740465942,56.0556028378388,55.6700162935769,83.2145628217507,3.02511414925017,1.77383517970051,1.58102614247627,22.2664428346111,6.55731518926576,5.56176664176644,0,0.174129737299267,0.398873881556595,0,0,0,0.596287222100115,6.881876760849,1.73570250803797,2.26123176769604,0.419499436209906,0,0.626984899610432,0.258416759169329,0.71153252537342,0,2.41697590265488,62.342312668918,0,0,1.62028389576352,0,0,0,0,0,0.549605231791222,2.63560834872127,0,5.23312862571041,9.44246708221105,2.91250176828533,1.85372853138506,3.15520282823695,5.67469411517371,10.0921968025615,1.06748995729705,9.8667019366864,2.17847724779836,1.48181739276657,0.653847612453835,0.302714855289863,0,5.85803579584492,3.43376084513353,35.9397247573003,1.19558944441441,17.3803057992772,25.899671098901,33.2868411884329,44.5056093335667,114.481583734568,27.2780062304021,38.0160914330257,28.6829637963126,5.46096817162816,0.718618141816238,81.8113513816762,67.4388822109887,74.8073111807294,99.6479199399502,83.3646804573333,15.9252342440993,1.02088964844019,17.4007946618196,10.4643120521098,1.90738711043606,23.7071965906678,6.18315175430633,8.24449728146013,14.1448810812008,38.9873327477325,8.67189345934668,7.32057945307932,4.23429533754577,0.323292113637624,26.9807290312627,25.3895287533653,37.3033303083073,0.966304265816484,5.18217629122586,1.43402297694502,0.487894824518382,0.530119073285941,0.929551542956147,0.414644220061482,0,0,4.69348596989448,27.6593603422941,64.9234130356658,0.464367928031979,4.33127689001751,0,0,0,0,0,0,0,0,0,0,1.40241773803446,16.8745344645874,2.94017422771084,6.33775174109154,0.982827216677626,5.90789906681404,0,0.245976877086227,4.97546649865724,0.658501712451753,3.37205259772859,0.100528972411631,10.1847289674383,1.954849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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3778 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6284 | |||
|TSSclassifier=S | |||
|UniProt=Q12791,Q59FH2 | |||
|association_with_transcript=1bp_to_NM_001014797,NM_001161352,NM_001161353,NM_002247,uc001jxj.2,uc001jxm.2,uc001jxn.2,uc001jxo.2,uc001jxq.2,uc001jxs.3,uc001jxt.3_5end | |||
|description=CAGE_peak_1_at_KCNMA1_5end | |||
|id=chr10:79397557..79397575,- | |||
|ontology_enrichment_celltype=CL:0000055!6.10e-17!180;CL:0000057!1.43e-09!75 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.35e-09,76 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!8.05e-17!365;UBERON:0000468!4.52e-14!659;UBERON:0000481!3.96e-13!347;UBERON:0000467!6.35e-13!625;UBERON:0000480!1.16e-12!626;UBERON:0002050!1.44e-12!605;UBERON:0005423!1.44e-12!605;UBERON:0000923!3.55e-12!604;UBERON:0005291!3.55e-12!604;UBERON:0006598!3.55e-12!604;UBERON:0002532!3.55e-12!604;UBERON:0000922!4.59e-12!612;UBERON:0000062!3.44e-11!511;UBERON:0004121!7.94e-11!169;UBERON:0000924!4.75e-10!173;UBERON:0006601!4.75e-10!173;UBERON:0000033!6.74e-09!123;UBERON:0003102!1.27e-08!95;UBERON:0000153!3.56e-08!129;UBERON:0007811!3.56e-08!129;UBERON:0000914!6.30e-08!83;UBERON:0002329!6.30e-08!83;UBERON:0003077!6.30e-08!83;UBERON:0003059!6.30e-08!83;UBERON:0007282!6.30e-08!83;UBERON:0009618!6.30e-08!83;UBERON:0007285!6.30e-08!83;UBERON:0002100!1.69e-07!216;UBERON:0007023!4.19e-07!115;UBERON:0000479!4.53e-07!787 | |||
|ontology_enrichment_uberon_v019=UBERON:0001434;4.32e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,4.69e-10,171;UBERON:0000924,4.69e-10,171;UBERON:0006601,4.69e-10,171;UBERON:0000922,2.60e-08,592;UBERON:0003102,3.88e-08,99;UBERON:0005423,4.56e-08,581;UBERON:0002050,1.18e-07,564;UBERON:0000923,2.27e-07,560;UBERON:0010316,2.27e-07,560;UBERON:0005291,2.27e-07,560;UBERON:0006598,2.27e-07,560;UBERON:0010317,2.27e-07,560;UBERON:0002532,2.27e-07,560;UBERON:0010314,5.50e-07,132 | |||
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| |||
|short_description=p1@KCNMA1 | |||
}} |
Revision as of 14:29, 10 September 2013
Short description: | p1@KCNMA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_KCNMA1_5end |
Coexpression cluster: | NA |
Association with transcript: | 1bp_to_NM_001014797, NM_001161352, NM_001161353, NM_002247, uc001jxj.2, uc001jxm.2, uc001jxn.2, uc001jxo.2, uc001jxq.2, uc001jxs.3, uc001jxt.3_5end |
EntrezGene: | KCNMA1 |
HGNC: | 6284 |
UniProt: | Q12791Q59FH2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.35e-09 | 76 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 4.69e-10 | 171 |
ectoderm | 4.69e-10 | 171 |
presumptive ectoderm | 4.69e-10 | 171 |
embryo | 2.60e-08 | 592 |
surface structure | 3.88e-08 | 99 |
developing anatomical structure | 4.56e-08 | 581 |
embryonic structure | 1.18e-07 | 564 |
germ layer | 2.27e-07 | 560 |
germ layer / neural crest | 2.27e-07 | 560 |
embryonic tissue | 2.27e-07 | 560 |
presumptive structure | 2.27e-07 | 560 |
germ layer / neural crest derived structure | 2.27e-07 | 560 |
epiblast (generic) | 2.27e-07 | 560 |
structure with developmental contribution from neural crest | 5.50e-07 | 132 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.