FFCP PHASE1:Hg19::chr11:126275956..126275992,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6484|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10864|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_uc009zce.2_5end|coexpression_cluster_id=C164|description=CAGE_peak_2_at_ST3GAL4_5end|id=chr11:126275956..126275992,+|ontology_enrichment_celltype=CL:0000066!1.60e-09!254;CL:0000039!2.17e-08!7;CL:0000586!2.17e-08!7|ontology_enrichment_celltype_v019=CL:0000039;2.83e-13;7!CL:0000586;2.83e-13;7!CL:0002541;5.19e-11;3|ontology_enrichment_celltype_v019_2=CL:0000039,3.71e-13,7;CL:0000586,3.71e-13,7;CL:0002541,4.76e-11,3|ontology_enrichment_development_v019=UBERON:0006595;7.45e-07;86|ontology_enrichment_disease=DOID:305!1.73e-18!106;DOID:0050687!1.83e-17!143;DOID:162!3.14e-09!235;DOID:14566!1.03e-08!239;DOID:5093!9.97e-07!4;DOID:1612!9.97e-07!4|ontology_enrichment_disease_v019=DOID:5093;8.59e-09;4!DOID:1612;8.59e-09;4|ontology_enrichment_disease_v019_2=DOID:305,7.61e-10,106;DOID:5093,8.60e-09,4;DOID:1612,8.60e-09,4;DOID:0050687,9.37e-09,143|ontology_enrichment_uberon=UBERON:0004119!2.07e-14!169;UBERON:0000925!2.07e-14!169;UBERON:0006595!2.07e-14!169;UBERON:0001007!6.95e-14!155;UBERON:0001555!6.95e-14!155;UBERON:0007026!6.95e-14!155;UBERON:0004921!1.53e-13!129;UBERON:0004185!1.53e-13!129;UBERON:0000077!9.22e-13!130;UBERON:0001557!3.28e-11!19;UBERON:0000065!5.67e-11!53;UBERON:0000072!2.02e-10!46;UBERON:0001004!2.06e-10!72;UBERON:0001737!2.26e-10!9;UBERON:0008947!1.45e-09!38;UBERON:0003258!1.45e-09!38;UBERON:0001041!2.95e-09!98;UBERON:0002294!1.44e-07!7;UBERON:0001173!1.44e-07!7;UBERON:0004912!1.44e-07!7|ontology_enrichment_uberon_v019=UBERON:0003124;5.19e-11;3!UBERON:0000920;5.19e-11;3!UBERON:0005631;7.61e-09;10!UBERON:0000158;7.61e-09;10!UBERON:0003127;9.88e-09;2|ontology_enrichment_uberon_v019_2=UBERON:0000920,4.76e-11,3;UBERON:0005631,6.29e-09,14;UBERON:0000158,6.29e-09,14;UBERON:0003127,9.16e-09,2;UBERON:0003124,1.85e-08,7;UBERON:0004921,1.90e-08,118;UBERON:0001557,2.79e-08,19;UBERON:0000072,4.84e-07,47;UBERON:0001007,7.47e-07,145;UBERON:0001555,7.47e-07,145;UBERON:0007026,7.47e-07,145|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.196468613246569,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709840800239063,0.674338760312407,0,0.882351781859152,0.871517776369625,1.66089433377768,1.21348177344148,1.56977172100277,1.92373578473195,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,3.95102198979638,2.57545848628462,0,0,0,0.93733833986777,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0.381988425558278,0,0,0.102827492703324,0.600686115687835,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.5481500811197,0,0,0,0.0868836144680828,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0.552485933615378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,14.9409466889197,0,0,0,0,0,0,0,0,0.137836572484531,0,0.145016693914229,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2512957258382,0,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43282702530686,0,0,0,0,5.49112314896687,0.296964680832639,6.45037474408387,0,0,0,0,0,0.996239941255349,0,0,0,0,0,0.629078458031288,14.1426727993731,0,4.34030984802508,0,0,0,0,0,2.08342208868187,0.0874599999961957,0,0.682760689712998,3.30529745380596,1.18193840883968,0.344743373241465,0,0,0,0.120596438625408,0,0,0,0,0.10893846351899,5.29810228258692,1.15425387755696,0,8.0697366535821,4.39812457607883,43.1330066530372,1.5950057986596,1.37396390102793,2.13213910407454,0,0,0,0,0,0,0,0,0,0.979396848954886,0,0,2.98578579323551,0.619202951523374,3.05515072466813,0,0,0,0,0,0,0,0.782658475728359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489961987071888,0,0,0,0.774050650312681,1.0232504392066,0.821154570532092,9.89287968181878,0,1.35588444468319,0,0,0,13.6885967914362,0.0801588202515337,0.426905989478705,0.19980960958213,0,0,0,0,0,1.88555227693436,0,0,0,0,0,0,0,0,0,0,0,0,1.79711100449092,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0.179287339332845,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,1.57054096250234,0,0,0,0,0,0,0,0,0.606596470166591,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0.414706207840855,0,0,0.15025760899721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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6484 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10864 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc009zce.2_5end | |||
|coexpression_cluster_id=C164 | |||
|description=CAGE_peak_2_at_ST3GAL4_5end | |||
|id=chr11:126275956..126275992,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.60e-09!254;CL:0000039!2.17e-08!7;CL:0000586!2.17e-08!7 | |||
|ontology_enrichment_celltype_v019=CL:0000039;2.83e-13;7!CL:0000586;2.83e-13;7!CL:0002541;5.19e-11;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,3.71e-13,7;CL:0000586,3.71e-13,7;CL:0002541,4.76e-11,3 | |||
|ontology_enrichment_development_v019=UBERON:0006595;7.45e-07;86 | |||
|ontology_enrichment_disease=DOID:305!1.73e-18!106;DOID:0050687!1.83e-17!143;DOID:162!3.14e-09!235;DOID:14566!1.03e-08!239;DOID:5093!9.97e-07!4;DOID:1612!9.97e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;8.59e-09;4!DOID:1612;8.59e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.61e-10,106;DOID:5093,8.60e-09,4;DOID:1612,8.60e-09,4;DOID:0050687,9.37e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.07e-14!169;UBERON:0000925!2.07e-14!169;UBERON:0006595!2.07e-14!169;UBERON:0001007!6.95e-14!155;UBERON:0001555!6.95e-14!155;UBERON:0007026!6.95e-14!155;UBERON:0004921!1.53e-13!129;UBERON:0004185!1.53e-13!129;UBERON:0000077!9.22e-13!130;UBERON:0001557!3.28e-11!19;UBERON:0000065!5.67e-11!53;UBERON:0000072!2.02e-10!46;UBERON:0001004!2.06e-10!72;UBERON:0001737!2.26e-10!9;UBERON:0008947!1.45e-09!38;UBERON:0003258!1.45e-09!38;UBERON:0001041!2.95e-09!98;UBERON:0002294!1.44e-07!7;UBERON:0001173!1.44e-07!7;UBERON:0004912!1.44e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;5.19e-11;3!UBERON:0000920;5.19e-11;3!UBERON:0005631;7.61e-09;10!UBERON:0000158;7.61e-09;10!UBERON:0003127;9.88e-09;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,4.76e-11,3;UBERON:0005631,6.29e-09,14;UBERON:0000158,6.29e-09,14;UBERON:0003127,9.16e-09,2;UBERON:0003124,1.85e-08,7;UBERON:0004921,1.90e-08,118;UBERON:0001557,2.79e-08,19;UBERON:0000072,4.84e-07,47;UBERON:0001007,7.47e-07,145;UBERON:0001555,7.47e-07,145;UBERON:0007026,7.47e-07,145 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0.919421224478927,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.196468613246569,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709840800239063,0.674338760312407,0,0.882351781859152,0.871517776369625,1.66089433377768,1.21348177344148,1.56977172100277,1.92373578473195,0,0,0,0,0,0,0,0,0.491953754172454,0,0,0,0,0,0,0,0,0,0,0,0,0,3.95102198979638,2.57545848628462,0,0,0,0.93733833986777,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0.381988425558278,0,0,0.102827492703324,0.600686115687835,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.5481500811197,0,0,0,0.0868836144680828,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116210378459959,0,0,0.552485933615378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,14.9409466889197,0,0,0,0,0,0,0,0,0.137836572484531,0,0.145016693914229,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.2512957258382,0,0,0.886860307073351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43282702530686,0,0,0,0,5.49112314896687,0.296964680832639,6.45037474408387,0,0,0,0,0,0.996239941255349,0,0,0,0,0,0.629078458031288,14.1426727993731,0,4.34030984802508,0,0,0,0,0,2.08342208868187,0.0874599999961957,0,0.682760689712998,3.30529745380596,1.18193840883968,0.344743373241465,0,0,0,0.120596438625408,0,0,0,0,0.10893846351899,5.29810228258692,1.15425387755696,0,8.0697366535821,4.39812457607883,43.1330066530372,1.5950057986596,1.37396390102793,2.13213910407454,0,0,0,0,0,0,0,0,0,0.979396848954886,0,0,2.98578579323551,0.619202951523374,3.05515072466813,0,0,0,0,0,0,0,0.782658475728359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489961987071888,0,0,0,0.774050650312681,1.0232504392066,0.821154570532092,9.89287968181878,0,1.35588444468319,0,0,0,13.6885967914362,0.0801588202515337,0.426905989478705,0.19980960958213,0,0,0,0,0,1.88555227693436,0,0,0,0,0,0,0,0,0,0,0,0,1.79711100449092,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104909176269996,0,0.179287339332845,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0.414239055347196,0,0,0,0,0,0,0,0,1.57054096250234,0,0,0,0,0,0,0,0,0.606596470166591,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0.414706207840855,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.54400723580486,0,0,0,0,0.256241518587947,1.0362910251936,0,0,0,0,0,0,0,7.39592431755195,0,0,0,0,0,0.279759015438889,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0.588886311006154,0,0,0.231051332300676,0,0,0,0.0752103283492573,0,0,10.2143610847755,0.327543835020193,0.739280431085226,0.0675375846183947,0,0,0,0,0.548257766857182,0.496211178389294,0,0.638812138197976,0,0,0,0,42.9319471587172,0,0,0,0,0,3.00324785108587,2.43328587836593,0,11.2108865325516,0,0,0,0,0,0.116241425368125,0.173858272302579,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0.111855431797792,223.291781474678,0,0,0,0,0,0,0,0,0.5647304101948,0,0,0.0771741581079447,0,2.82190377816914,1.47088993052343,0.235676547101626,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,1.06886962106224,2.11358268930143,0,0,0,0,0,13.0072728959598,0,0.129177819672012,0,0.112131862580613,0,0,2.39488422686657,3.42233301085281,7.20666967256087,5.66605422602143,7.65118820055831,0.244209805832924,0,0,0,2.34640942403454,0,1.22068853494722,1.33151354837103,0,0 | |||
|short_description=p2@ST3GAL4 | |||
}} |
Revision as of 16:31, 10 September 2013
Short description: | p2@ST3GAL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_ST3GAL4_5end |
Coexpression cluster: | C164_signet_corpus_optic_mucinous_substantia_salivary_choriocarcinoma |
Association with transcript: | 0bp_to_uc009zce.2_5end |
EntrezGene: | ST3GAL4 |
HGNC: | 10864 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 3.71e-13 | 7 |
germ cell | 3.71e-13 | 7 |
chorionic membrane mesenchymal stem cell | 4.76e-11 | 3 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 4.76e-11 | 3 |
extraembryonic membrane | 6.29e-09 | 14 |
membranous layer | 6.29e-09 | 14 |
open tracheal system trachea | 9.16e-09 | 2 |
chorion | 1.85e-08 | 7 |
subdivision of digestive tract | 1.90e-08 | 118 |
upper respiratory tract | 2.79e-08 | 19 |
segment of respiratory tract | 4.84e-07 | 47 |
digestive system | 7.47e-07 | 145 |
digestive tract | 7.47e-07 | 145 |
primitive gut | 7.47e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.61e-10 | 106 |
thoracic cancer | 8.60e-09 | 4 |
breast cancer | 8.60e-09 | 4 |
cell type cancer | 9.37e-09 | 143 |
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