FFCP PHASE1:Hg19::chr11:129245526..129245553,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8538|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=956|TSSclassifier=S|UniProt=Q9UMQ3|association_with_transcript=-281bp_to_ENST00000281437_5end|coexpression_cluster_id=C37|description=CAGE_peak_1_at_BARX2_5end|id=chr11:129245526..129245553,+|ontology_enrichment_celltype=CL:0002076!3.96e-18!43;CL:0000223!4.02e-12!59;CL:0002251!4.35e-11!21;CL:0000066!2.97e-09!254;CL:0002368!4.13e-08!13|ontology_enrichment_celltype_v019=CL:0002076;1.97e-17;42!CL:0002368;1.93e-12;13!CL:0002251;1.91e-10;20!CL:0002202;3.64e-08;9!CL:0002632;3.64e-08;9!CL:0000622;7.17e-08;5|ontology_enrichment_celltype_v019_2=CL:0002076,9.23e-23,42;CL:0000223,6.29e-17,58;CL:0002368,2.71e-12,13;CL:0002251,2.13e-10,20;CL:0000066,6.24e-10,253;CL:0002202,4.09e-08,9;CL:0002632,4.09e-08,9;CL:0000622,6.46e-08,5|ontology_enrichment_development_v019=CL:0000223;7.03e-10;58|ontology_enrichment_disease=DOID:305!6.20e-09!106;DOID:0050687!8.23e-07!143;DOID:1749!8.43e-07!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,4.73e-07,106|ontology_enrichment_uberon=UBERON:0007023!4.99e-24!115;UBERON:0004119!1.12e-18!169;UBERON:0000925!1.12e-18!169;UBERON:0006595!1.12e-18!169;UBERON:0001007!3.44e-15!155;UBERON:0001555!3.44e-15!155;UBERON:0007026!3.44e-15!155;UBERON:0001004!2.24e-13!72;UBERON:0004921!4.02e-13!129;UBERON:0004185!4.02e-13!129;UBERON:0000161!1.27e-11!35;UBERON:0000077!6.46e-11!130;UBERON:0000062!1.30e-10!511;UBERON:0000481!2.11e-10!347;UBERON:0001049!5.36e-10!57;UBERON:0005068!5.36e-10!57;UBERON:0006241!5.36e-10!57;UBERON:0007135!5.36e-10!57;UBERON:0000922!9.70e-10!612;UBERON:0000166!1.50e-09!21;UBERON:0000475!1.63e-09!365;UBERON:0000468!1.86e-09!659;UBERON:0000153!2.47e-09!129;UBERON:0007811!2.47e-09!129;UBERON:0002050!8.71e-09!605;UBERON:0005423!8.71e-09!605;UBERON:0000924!1.14e-08!173;UBERON:0006601!1.14e-08!173;UBERON:0005181!1.43e-08!35;UBERON:0000923!2.10e-08!604;UBERON:0005291!2.10e-08!604;UBERON:0006598!2.10e-08!604;UBERON:0002532!2.10e-08!604;UBERON:0004121!2.60e-08!169;UBERON:0000033!2.79e-08!123;UBERON:0005178!3.89e-08!34;UBERON:0002224!3.89e-08!34;UBERON:0000065!6.14e-08!53;UBERON:0001041!7.82e-08!98;UBERON:0002616!8.09e-08!59;UBERON:0000467!9.17e-08!625;UBERON:0000480!1.13e-07!626;UBERON:0000464!1.43e-07!104;UBERON:0005911!2.90e-07!82;UBERON:0001044!2.97e-07!6;UBERON:0003293!2.97e-07!6;UBERON:0003294!2.97e-07!6;UBERON:0010047!2.97e-07!6;UBERON:0000167!2.97e-07!6;UBERON:0005153!4.61e-07!37;UBERON:0000165!6.49e-07!28;UBERON:0000930!6.49e-07!28;UBERON:0000064!6.67e-07!219;UBERON:0000915!7.03e-07!52|ontology_enrichment_uberon_v019=UBERON:0001041;4.45e-15;14!UBERON:0004921;3.01e-13;33!UBERON:0001044;2.33e-10;6!UBERON:0003293;2.33e-10;6!UBERON:0003294;2.33e-10;6!UBERON:0010047;2.33e-10;6!UBERON:0003408;2.33e-10;6!UBERON:0000167;2.33e-10;6!UBERON:0000165;1.26e-08;28!UBERON:0000161;2.08e-08;19!UBERON:0000166;2.08e-08;19!UBERON:0001555;4.27e-08;54!UBERON:0005178;1.10e-07;34!UBERON:0002224;1.10e-07;34!UBERON:0007196;1.53e-07;15!UBERON:0001558;1.53e-07;15!UBERON:0005181;2.91e-07;35|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.22e-17,160;UBERON:0000925,1.22e-17,160;UBERON:0006595,1.22e-17,160;UBERON:0001007,6.73e-15,145;UBERON:0001555,6.73e-15,145;UBERON:0007026,6.73e-15,145;UBERON:0004921,1.58e-14,118;UBERON:0001004,3.53e-12,74;UBERON:0000161,2.16e-11,36;UBERON:0001044,2.07e-10,6;UBERON:0003293,2.07e-10,6;UBERON:0003294,2.07e-10,6;UBERON:0010047,2.07e-10,6;UBERON:0000167,2.07e-10,6;UBERON:0001041,2.60e-10,87;UBERON:0000166,3.24e-10,22;UBERON:0007023,3.35e-09,114;UBERON:0005178,2.09e-08,34;UBERON:0002224,2.09e-08,34;UBERON:0000165,3.62e-08,29;UBERON:0000930,3.62e-08,29;UBERON:0005181,4.80e-08,35;UBERON:0000065,1.55e-07,54;UBERON:0007196,1.69e-07,15;UBERON:0001558,1.69e-07,15;UBERON:0000915,2.90e-07,52|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.7107395916628,7.8313538882345,4.06729411183466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.785874452986276,16.3932879731644,18.9100065820059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,27.0378312328371,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12586938479627,4.09119180886252,0.573609190778008,0,0,0.116193942869518,0.310983165046111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983907508344908,0,2.63400684980701,5.62008766288098,1.50793458617446,8.33296006426766,0,0,0,0,0,0,0,0,10.2726571734706,4.29243081047436,0,0,0,0,0,0,0.0895585227028483,0.871901815541886,0,0,0,2.69526550203004,2.88239906833923,3.7872730027914,0.063497894292169,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8538 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=956 | |||
|TSSclassifier=S | |||
|UniProt=Q9UMQ3 | |||
|association_with_transcript=-281bp_to_ENST00000281437_5end | |||
|coexpression_cluster_id=C37 | |||
|description=CAGE_peak_1_at_BARX2_5end | |||
|id=chr11:129245526..129245553,+ | |||
|ontology_enrichment_celltype=CL:0002076!3.96e-18!43;CL:0000223!4.02e-12!59;CL:0002251!4.35e-11!21;CL:0000066!2.97e-09!254;CL:0002368!4.13e-08!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.97e-17;42!CL:0002368;1.93e-12;13!CL:0002251;1.91e-10;20!CL:0002202;3.64e-08;9!CL:0002632;3.64e-08;9!CL:0000622;7.17e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,9.23e-23,42;CL:0000223,6.29e-17,58;CL:0002368,2.71e-12,13;CL:0002251,2.13e-10,20;CL:0000066,6.24e-10,253;CL:0002202,4.09e-08,9;CL:0002632,4.09e-08,9;CL:0000622,6.46e-08,5 | |||
|ontology_enrichment_development_v019=CL:0000223;7.03e-10;58 | |||
|ontology_enrichment_disease=DOID:305!6.20e-09!106;DOID:0050687!8.23e-07!143;DOID:1749!8.43e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.73e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.99e-24!115;UBERON:0004119!1.12e-18!169;UBERON:0000925!1.12e-18!169;UBERON:0006595!1.12e-18!169;UBERON:0001007!3.44e-15!155;UBERON:0001555!3.44e-15!155;UBERON:0007026!3.44e-15!155;UBERON:0001004!2.24e-13!72;UBERON:0004921!4.02e-13!129;UBERON:0004185!4.02e-13!129;UBERON:0000161!1.27e-11!35;UBERON:0000077!6.46e-11!130;UBERON:0000062!1.30e-10!511;UBERON:0000481!2.11e-10!347;UBERON:0001049!5.36e-10!57;UBERON:0005068!5.36e-10!57;UBERON:0006241!5.36e-10!57;UBERON:0007135!5.36e-10!57;UBERON:0000922!9.70e-10!612;UBERON:0000166!1.50e-09!21;UBERON:0000475!1.63e-09!365;UBERON:0000468!1.86e-09!659;UBERON:0000153!2.47e-09!129;UBERON:0007811!2.47e-09!129;UBERON:0002050!8.71e-09!605;UBERON:0005423!8.71e-09!605;UBERON:0000924!1.14e-08!173;UBERON:0006601!1.14e-08!173;UBERON:0005181!1.43e-08!35;UBERON:0000923!2.10e-08!604;UBERON:0005291!2.10e-08!604;UBERON:0006598!2.10e-08!604;UBERON:0002532!2.10e-08!604;UBERON:0004121!2.60e-08!169;UBERON:0000033!2.79e-08!123;UBERON:0005178!3.89e-08!34;UBERON:0002224!3.89e-08!34;UBERON:0000065!6.14e-08!53;UBERON:0001041!7.82e-08!98;UBERON:0002616!8.09e-08!59;UBERON:0000467!9.17e-08!625;UBERON:0000480!1.13e-07!626;UBERON:0000464!1.43e-07!104;UBERON:0005911!2.90e-07!82;UBERON:0001044!2.97e-07!6;UBERON:0003293!2.97e-07!6;UBERON:0003294!2.97e-07!6;UBERON:0010047!2.97e-07!6;UBERON:0000167!2.97e-07!6;UBERON:0005153!4.61e-07!37;UBERON:0000165!6.49e-07!28;UBERON:0000930!6.49e-07!28;UBERON:0000064!6.67e-07!219;UBERON:0000915!7.03e-07!52 | |||
|ontology_enrichment_uberon_v019=UBERON:0001041;4.45e-15;14!UBERON:0004921;3.01e-13;33!UBERON:0001044;2.33e-10;6!UBERON:0003293;2.33e-10;6!UBERON:0003294;2.33e-10;6!UBERON:0010047;2.33e-10;6!UBERON:0003408;2.33e-10;6!UBERON:0000167;2.33e-10;6!UBERON:0000165;1.26e-08;28!UBERON:0000161;2.08e-08;19!UBERON:0000166;2.08e-08;19!UBERON:0001555;4.27e-08;54!UBERON:0005178;1.10e-07;34!UBERON:0002224;1.10e-07;34!UBERON:0007196;1.53e-07;15!UBERON:0001558;1.53e-07;15!UBERON:0005181;2.91e-07;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.22e-17,160;UBERON:0000925,1.22e-17,160;UBERON:0006595,1.22e-17,160;UBERON:0001007,6.73e-15,145;UBERON:0001555,6.73e-15,145;UBERON:0007026,6.73e-15,145;UBERON:0004921,1.58e-14,118;UBERON:0001004,3.53e-12,74;UBERON:0000161,2.16e-11,36;UBERON:0001044,2.07e-10,6;UBERON:0003293,2.07e-10,6;UBERON:0003294,2.07e-10,6;UBERON:0010047,2.07e-10,6;UBERON:0000167,2.07e-10,6;UBERON:0001041,2.60e-10,87;UBERON:0000166,3.24e-10,22;UBERON:0007023,3.35e-09,114;UBERON:0005178,2.09e-08,34;UBERON:0002224,2.09e-08,34;UBERON:0000165,3.62e-08,29;UBERON:0000930,3.62e-08,29;UBERON:0005181,4.80e-08,35;UBERON:0000065,1.55e-07,54;UBERON:0007196,1.69e-07,15;UBERON:0001558,1.69e-07,15;UBERON:0000915,2.90e-07,52 | |||
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| |||
|short_description=p1@BARX2 | |||
}} |
Revision as of 16:38, 10 September 2013
Short description: | p1@BARX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BARX2_5end |
Coexpression cluster: | C37_salivary_submaxillary_parotid_seminal_tongue_ductus_trachea |
Association with transcript: | -281bp_to_ENST00000281437_5end |
EntrezGene: | BARX2 |
HGNC: | 956 |
UniProt: | Q9UMQ3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 9.23e-23 | 42 |
endodermal cell | 6.29e-17 | 58 |
respiratory epithelial cell | 2.71e-12 | 13 |
epithelial cell of alimentary canal | 2.13e-10 | 20 |
epithelial cell | 6.24e-10 | 253 |
epithelial cell of tracheobronchial tree | 4.09e-08 | 9 |
epithelial cell of lower respiratory tract | 4.09e-08 | 9 |
acinar cell | 6.46e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.22e-17 | 160 |
endoderm | 1.22e-17 | 160 |
presumptive endoderm | 1.22e-17 | 160 |
digestive system | 6.73e-15 | 145 |
digestive tract | 6.73e-15 | 145 |
primitive gut | 6.73e-15 | 145 |
subdivision of digestive tract | 1.58e-14 | 118 |
respiratory system | 3.53e-12 | 74 |
orifice | 2.16e-11 | 36 |
saliva-secreting gland | 2.07e-10 | 6 |
gland of oral region | 2.07e-10 | 6 |
gland of foregut | 2.07e-10 | 6 |
oral gland | 2.07e-10 | 6 |
oral cavity | 2.07e-10 | 6 |
foregut | 2.60e-10 | 87 |
oral opening | 3.24e-10 | 22 |
adult organism | 3.35e-09 | 114 |
thoracic cavity element | 2.09e-08 | 34 |
thoracic cavity | 2.09e-08 | 34 |
mouth | 3.62e-08 | 29 |
stomodeum | 3.62e-08 | 29 |
thoracic segment organ | 4.80e-08 | 35 |
respiratory tract | 1.55e-07 | 54 |
tracheobronchial tree | 1.69e-07 | 15 |
lower respiratory tract | 1.69e-07 | 15 |
thoracic segment of trunk | 2.90e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.73e-07 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.