FFCP PHASE1:Hg19::chr12:100867627..100867652,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9971|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7967|TSSclassifier=S|UniProt=Q96RI1|association_with_transcript=-26bp_to_uc001thp.1,uc001thq.1,uc001thr.1,uc010svj.1,uc010svk.1_5end|coexpression_cluster_id=C5|description=CAGE_peak_1_at_NR1H4_5end|id=chr12:100867627..100867652,+|ontology_enrichment_celltype=CL:0000181!1.91e-16!12;CL:0000417!1.91e-16!12;CL:0000668!1.91e-16!12;CL:0000414!1.91e-16!12;CL:0000412!1.91e-16!12;CL:0000182!1.91e-16!12;CL:0002622!9.97e-08!3;CL:0000746!1.25e-07!3;CL:0000513!1.25e-07!3;CL:0000064!8.39e-07!3;CL:0005012!8.39e-07!3;CL:0000067!8.39e-07!3;CL:0002304!8.39e-07!3|ontology_enrichment_celltype_v019=CL:0000182;2.01e-34;12!CL:0002195;1.99e-11;2!CL:0002571;1.99e-11;2!CL:0002622;2.20e-07;3|ontology_enrichment_celltype_v019_2=CL:0000182,2.27e-34,12;CL:0002195,1.99e-11,2;CL:0002571,1.99e-11,2;CL:0002622,1.74e-07,3|ontology_enrichment_development_v019=UBERON:0004161;4.60e-37;11!UBERON:0009497;4.02e-31;13!UBERON:0003104;8.25e-18;31!UBERON:0001041;1.60e-15;30|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!6.94e-24!19;UBERON:0006925!6.94e-24!19;UBERON:0008836!6.94e-24!19;UBERON:0008835!5.87e-23!22;UBERON:0003894!5.87e-23!22;UBERON:0009497!1.61e-22!25;UBERON:0000015!1.61e-22!25;UBERON:0002423!1.61e-22!25;UBERON:0006235!1.61e-22!25;UBERON:0004161!1.61e-22!25;UBERON:0009854!9.10e-22!23;UBERON:0007499!1.13e-19!25;UBERON:0005172!6.62e-19!55;UBERON:0005173!6.62e-19!55;UBERON:0009856!9.46e-19!26;UBERON:0005057!1.14e-18!26;UBERON:0003929!7.77e-18!54;UBERON:0002417!2.30e-16!61;UBERON:0000916!2.30e-16!61;UBERON:0004921!6.08e-16!129;UBERON:0004185!6.08e-16!129;UBERON:0000481!4.33e-15!347;UBERON:0002368!1.16e-14!35;UBERON:0000949!1.73e-13!45;UBERON:0002365!4.29e-13!31;UBERON:0002330!4.29e-13!31;UBERON:0005911!5.17e-13!82;UBERON:0002530!7.60e-13!59;UBERON:0001007!1.66e-12!155;UBERON:0001555!1.66e-12!155;UBERON:0007026!1.66e-12!155;UBERON:0005177!6.85e-12!107;UBERON:0004119!1.21e-10!169;UBERON:0000925!1.21e-10!169;UBERON:0006595!1.21e-10!169;UBERON:0001048!1.35e-10!168;UBERON:0000160!3.59e-09!27;UBERON:0009569!4.34e-09!113;UBERON:0000488!5.13e-09!4;UBERON:0007625!7.81e-09!11;UBERON:0003104!1.58e-08!238;UBERON:0009142!1.58e-08!238;UBERON:0000077!1.71e-08!130;UBERON:0000490!3.44e-08!138;UBERON:0005256!3.46e-08!143;UBERON:0000483!3.82e-08!309;UBERON:0002100!5.45e-08!216;UBERON:0000119!6.03e-08!312;UBERON:0000475!6.20e-08!365;UBERON:0000062!9.64e-08!511;UBERON:0005409!9.98e-08!35;UBERON:0000477!1.27e-07!286;UBERON:0003914!2.34e-07!118;UBERON:0004111!6.03e-07!241;UBERON:0001778!8.39e-07!3;UBERON:0001775!8.39e-07!3|ontology_enrichment_uberon_v019=UBERON:0002107;1.95e-44;19!UBERON:0006925;1.95e-44;19!UBERON:0002423;2.62e-38;25!UBERON:0002368;1.17e-26;33!UBERON:0002365;4.71e-25;31!UBERON:0002330;4.71e-25;31!UBERON:0000949;5.48e-17;43!UBERON:0005172;2.69e-15;52!UBERON:0005173;2.69e-15;52!UBERON:0002530;6.77e-14;57!UBERON:0002417;4.98e-11;58!UBERON:0000916;4.98e-11;58!UBERON:0002108;1.86e-09;4!UBERON:0001007;5.23e-07;81|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.17e-44,19;UBERON:0006925,2.17e-44,19;UBERON:0008836,2.17e-44,19;UBERON:0009497,2.98e-38,25;UBERON:0000015,2.98e-38,25;UBERON:0002423,2.98e-38,25;UBERON:0006235,2.98e-38,25;UBERON:0004161,2.98e-38,25;UBERON:0008835,5.98e-38,22;UBERON:0003894,5.98e-38,22;UBERON:0009854,3.55e-36,23;UBERON:0007499,4.69e-33,25;UBERON:0009856,1.13e-31,26;UBERON:0002368,2.09e-26,35;UBERON:0002365,4.17e-26,31;UBERON:0002330,4.17e-26,31;UBERON:0003929,7.01e-24,54;UBERON:0000949,7.44e-23,45;UBERON:0002530,1.65e-21,59;UBERON:0005172,3.13e-21,54;UBERON:0005173,3.13e-21,54;UBERON:0002417,9.58e-19,60;UBERON:0000916,9.58e-19,60;UBERON:0005911,2.21e-18,82;UBERON:0004921,7.02e-16,118;UBERON:0005177,3.14e-14,101;UBERON:0001007,2.30e-13,145;UBERON:0001555,2.30e-13,145;UBERON:0007026,2.30e-13,145;UBERON:0004119,1.21e-11,160;UBERON:0000925,1.21e-11,160;UBERON:0006595,1.21e-11,160;UBERON:0009569,5.51e-11,112;UBERON:0001041,2.92e-10,87;UBERON:0005256,1.14e-09,122;UBERON:0002108,2.22e-09,4;UBERON:0002100,1.70e-08,199;UBERON:0011216,1.71e-08,223;UBERON:0001048,2.07e-08,160;UBERON:0003104,2.18e-08,160;UBERON:0009142,2.18e-08,160;UBERON:0000490,2.81e-08,148;UBERON:0003914,8.22e-07,117|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.511450247374121,0,0,0,0,0,0.189069634328136,0.221729397462564,0.263504357079378,1.63723844372141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.15585442544872,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9971 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7967 | |||
|TSSclassifier=S | |||
|UniProt=Q96RI1 | |||
|association_with_transcript=-26bp_to_uc001thp.1,uc001thq.1,uc001thr.1,uc010svj.1,uc010svk.1_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_1_at_NR1H4_5end | |||
|id=chr12:100867627..100867652,+ | |||
|ontology_enrichment_celltype=CL:0000181!1.91e-16!12;CL:0000417!1.91e-16!12;CL:0000668!1.91e-16!12;CL:0000414!1.91e-16!12;CL:0000412!1.91e-16!12;CL:0000182!1.91e-16!12;CL:0002622!9.97e-08!3;CL:0000746!1.25e-07!3;CL:0000513!1.25e-07!3;CL:0000064!8.39e-07!3;CL:0005012!8.39e-07!3;CL:0000067!8.39e-07!3;CL:0002304!8.39e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.01e-34;12!CL:0002195;1.99e-11;2!CL:0002571;1.99e-11;2!CL:0002622;2.20e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.27e-34,12;CL:0002195,1.99e-11,2;CL:0002571,1.99e-11,2;CL:0002622,1.74e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.60e-37;11!UBERON:0009497;4.02e-31;13!UBERON:0003104;8.25e-18;31!UBERON:0001041;1.60e-15;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!6.94e-24!19;UBERON:0006925!6.94e-24!19;UBERON:0008836!6.94e-24!19;UBERON:0008835!5.87e-23!22;UBERON:0003894!5.87e-23!22;UBERON:0009497!1.61e-22!25;UBERON:0000015!1.61e-22!25;UBERON:0002423!1.61e-22!25;UBERON:0006235!1.61e-22!25;UBERON:0004161!1.61e-22!25;UBERON:0009854!9.10e-22!23;UBERON:0007499!1.13e-19!25;UBERON:0005172!6.62e-19!55;UBERON:0005173!6.62e-19!55;UBERON:0009856!9.46e-19!26;UBERON:0005057!1.14e-18!26;UBERON:0003929!7.77e-18!54;UBERON:0002417!2.30e-16!61;UBERON:0000916!2.30e-16!61;UBERON:0004921!6.08e-16!129;UBERON:0004185!6.08e-16!129;UBERON:0000481!4.33e-15!347;UBERON:0002368!1.16e-14!35;UBERON:0000949!1.73e-13!45;UBERON:0002365!4.29e-13!31;UBERON:0002330!4.29e-13!31;UBERON:0005911!5.17e-13!82;UBERON:0002530!7.60e-13!59;UBERON:0001007!1.66e-12!155;UBERON:0001555!1.66e-12!155;UBERON:0007026!1.66e-12!155;UBERON:0005177!6.85e-12!107;UBERON:0004119!1.21e-10!169;UBERON:0000925!1.21e-10!169;UBERON:0006595!1.21e-10!169;UBERON:0001048!1.35e-10!168;UBERON:0000160!3.59e-09!27;UBERON:0009569!4.34e-09!113;UBERON:0000488!5.13e-09!4;UBERON:0007625!7.81e-09!11;UBERON:0003104!1.58e-08!238;UBERON:0009142!1.58e-08!238;UBERON:0000077!1.71e-08!130;UBERON:0000490!3.44e-08!138;UBERON:0005256!3.46e-08!143;UBERON:0000483!3.82e-08!309;UBERON:0002100!5.45e-08!216;UBERON:0000119!6.03e-08!312;UBERON:0000475!6.20e-08!365;UBERON:0000062!9.64e-08!511;UBERON:0005409!9.98e-08!35;UBERON:0000477!1.27e-07!286;UBERON:0003914!2.34e-07!118;UBERON:0004111!6.03e-07!241;UBERON:0001778!8.39e-07!3;UBERON:0001775!8.39e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.95e-44;19!UBERON:0006925;1.95e-44;19!UBERON:0002423;2.62e-38;25!UBERON:0002368;1.17e-26;33!UBERON:0002365;4.71e-25;31!UBERON:0002330;4.71e-25;31!UBERON:0000949;5.48e-17;43!UBERON:0005172;2.69e-15;52!UBERON:0005173;2.69e-15;52!UBERON:0002530;6.77e-14;57!UBERON:0002417;4.98e-11;58!UBERON:0000916;4.98e-11;58!UBERON:0002108;1.86e-09;4!UBERON:0001007;5.23e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.17e-44,19;UBERON:0006925,2.17e-44,19;UBERON:0008836,2.17e-44,19;UBERON:0009497,2.98e-38,25;UBERON:0000015,2.98e-38,25;UBERON:0002423,2.98e-38,25;UBERON:0006235,2.98e-38,25;UBERON:0004161,2.98e-38,25;UBERON:0008835,5.98e-38,22;UBERON:0003894,5.98e-38,22;UBERON:0009854,3.55e-36,23;UBERON:0007499,4.69e-33,25;UBERON:0009856,1.13e-31,26;UBERON:0002368,2.09e-26,35;UBERON:0002365,4.17e-26,31;UBERON:0002330,4.17e-26,31;UBERON:0003929,7.01e-24,54;UBERON:0000949,7.44e-23,45;UBERON:0002530,1.65e-21,59;UBERON:0005172,3.13e-21,54;UBERON:0005173,3.13e-21,54;UBERON:0002417,9.58e-19,60;UBERON:0000916,9.58e-19,60;UBERON:0005911,2.21e-18,82;UBERON:0004921,7.02e-16,118;UBERON:0005177,3.14e-14,101;UBERON:0001007,2.30e-13,145;UBERON:0001555,2.30e-13,145;UBERON:0007026,2.30e-13,145;UBERON:0004119,1.21e-11,160;UBERON:0000925,1.21e-11,160;UBERON:0006595,1.21e-11,160;UBERON:0009569,5.51e-11,112;UBERON:0001041,2.92e-10,87;UBERON:0005256,1.14e-09,122;UBERON:0002108,2.22e-09,4;UBERON:0002100,1.70e-08,199;UBERON:0011216,1.71e-08,223;UBERON:0001048,2.07e-08,160;UBERON:0003104,2.18e-08,160;UBERON:0009142,2.18e-08,160;UBERON:0000490,2.81e-08,148;UBERON:0003914,8.22e-07,117 | |||
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|short_description=p1@NR1H4 | |||
}} |
Revision as of 20:21, 10 September 2013
Short description: | p1@NR1H4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_NR1H4_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -26bp_to_uc001thp.1, uc001thq.1, uc001thr.1, uc010svj.1, uc010svk.1_5end |
EntrezGene: | NR1H4 |
HGNC: | 7967 |
UniProt: | Q96RI1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.27e-34 | 12 |
hepatic stem cell | 1.99e-11 | 2 |
hepatic mesenchymal stem cell | 1.99e-11 | 2 |
prostate stromal cell | 1.74e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.