FFCP PHASE1:Hg19::chr12:13061590..13061609,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9052|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9836|TSSclassifier=N|UniProt=|association_with_transcript=-393bp_to_ENST00000540125_5end|coexpression_cluster_id=C814|description=CAGE_peak_12_at_GPRC5A_5end|id=chr12:13061590..13061609,+|ontology_enrichment_celltype=CL:0000066!1.16e-24!254;CL:0000077!7.62e-10!19|ontology_enrichment_celltype_v019=CL:0000077;3.21e-15;19!CL:0000239;1.66e-07;3!CL:1000615;1.66e-07;3!CL:0002231;1.66e-07;3!CL:0002306;1.66e-07;3!CL:0002681;9.35e-07;12!CL:0002584;9.35e-07;12|ontology_enrichment_celltype_v019_2=CL:0000077,2.03e-15,19;CL:0000066,7.76e-09,253;CL:0002231,1.99e-07,3;CL:0000239,2.49e-07,3;CL:1000615,2.49e-07,3;CL:0002306,2.49e-07,3|ontology_enrichment_development_v019=UBERON:0008947;1.16e-11;29|ontology_enrichment_disease=DOID:305!2.22e-20!106;DOID:0050687!1.14e-16!143;DOID:14566!1.07e-08!239;DOID:162!1.62e-07!235|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!1.71e-12!169;UBERON:0000925!1.71e-12!169;UBERON:0006595!1.71e-12!169;UBERON:0001007!3.18e-12!155;UBERON:0001555!3.18e-12!155;UBERON:0007026!3.18e-12!155;UBERON:0004921!5.85e-11!129;UBERON:0004185!5.85e-11!129;UBERON:0005911!1.83e-10!82;UBERON:0005153!1.32e-09!37;UBERON:0000077!1.96e-09!130;UBERON:0008947!4.17e-09!38;UBERON:0003258!4.17e-09!38;UBERON:0002367!7.11e-09!11;UBERON:0010147!7.11e-09!11;UBERON:0009846!7.11e-09!11;UBERON:0003353!7.11e-09!11;UBERON:0004902!7.11e-09!11;UBERON:0003820!7.11e-09!11;UBERON:0009847!7.11e-09!11;UBERON:0003104!2.69e-08!238;UBERON:0009142!2.69e-08!238;UBERON:0006554!4.44e-08!44;UBERON:0001737!4.93e-08!9;UBERON:0003937!6.81e-08!12;UBERON:0005399!6.81e-08!12;UBERON:0001008!9.63e-08!45;UBERON:0000065!9.75e-08!53;UBERON:0005157!1.24e-07!51;UBERON:0005631!1.27e-07!14;UBERON:0000158!1.27e-07!14;UBERON:0003064!1.45e-07!37;UBERON:0000162!1.47e-07!14;UBERON:0001353!1.47e-07!14;UBERON:0000163!1.47e-07!14;UBERON:0006866!1.47e-07!14;UBERON:0000164!1.47e-07!14;UBERON:0000931!1.47e-07!14;UBERON:0001048!6.88e-07!168;UBERON:0004122!7.50e-07!15;UBERON:0003101!9.42e-07!22;UBERON:0000079!9.42e-07!22|ontology_enrichment_uberon_v019=UBERON:0001737;5.43e-13;9!UBERON:0001557;5.43e-13;9!UBERON:0006853;1.66e-07;3!UBERON:0007685;1.66e-07;3!UBERON:0004134;1.66e-07;3!UBERON:0002367;3.52e-07;11!UBERON:0010147;3.52e-07;11!UBERON:0001225;9.35e-07;12!UBERON:0008987;9.35e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.35e-13,9;UBERON:0008947,1.23e-08,38;UBERON:0003258,1.23e-08,38;UBERON:0006853,2.49e-07,3;UBERON:0007685,2.49e-07,3;UBERON:0004134,2.49e-07,3;UBERON:0002367,4.21e-07,11;UBERON:0010147,4.21e-07,11;UBERON:0009846,4.21e-07,11;UBERON:0003353,4.21e-07,11;UBERON:0004902,4.21e-07,11;UBERON:0003820,4.21e-07,11;UBERON:0009847,4.21e-07,11;UBERON:0005153,5.19e-07,37;UBERON:0006554,9.26e-07,47|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,6.28021051175185,0.218441372130172,0.263766978228454,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.641858054152187,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.12786256184353,1.0843174571537,0.50133791063589,1.01392563272577,0.795285947051099,0.486634870302636,0.0945348171640679,0.443458794925128,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45071417671979,0.113432183160021,0.538168907066586,0,0,0,0.103052529238439,0.257640540045629,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591534000199219,1.34867752062481,0,1.32352767278873,1.52515610864684,0.237270619111097,1.75280700608214,0.98110732562673,1.15424147083917,0,0,0,0,0,0,0,0,0.245976877086227,0.343135620597051,0,0,0,0,0,0,1.44331342025273,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0.43596006883328,0.22001485746285,0.258543431515556,0,0,0.531876233169741,1.04007436911366,0,0,0.266422179016099,0.142977993658148,0,0,0,0.355391948742546,0,0,0,1.29964888536674,0,0,0,0,0,0,0,0.61642896765115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415941723061614,0.535286966391485,0,0.35142424497814,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,1.66435439510497,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0.116210378459959,1.20859449591622,2.20557117333613,0.644566922551274,1.26295892981067,0.364182336013434,0.655622074797121,0.451199612907412,1.07821471946181,0,0,0,0,0.170093705276516,0,0,0.270946437543853,0,1.01950509218015,2.49322802678617,0.447749509444357,0,0,0.256450125116389,0.984043937099117,0,0.515205058238611,0,0,0,0,0,0.096670718292122,0,0,0,0.107420244868274,0,0,0,0,0,0.127612712494584,0.10115778085555,0,0.62962469366128,0,0,0,0,0,0.14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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9052 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9836 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-393bp_to_ENST00000540125_5end | |||
|coexpression_cluster_id=C814 | |||
|description=CAGE_peak_12_at_GPRC5A_5end | |||
|id=chr12:13061590..13061609,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.16e-24!254;CL:0000077!7.62e-10!19 | |||
|ontology_enrichment_celltype_v019=CL:0000077;3.21e-15;19!CL:0000239;1.66e-07;3!CL:1000615;1.66e-07;3!CL:0002231;1.66e-07;3!CL:0002306;1.66e-07;3!CL:0002681;9.35e-07;12!CL:0002584;9.35e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,2.03e-15,19;CL:0000066,7.76e-09,253;CL:0002231,1.99e-07,3;CL:0000239,2.49e-07,3;CL:1000615,2.49e-07,3;CL:0002306,2.49e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.16e-11;29 | |||
|ontology_enrichment_disease=DOID:305!2.22e-20!106;DOID:0050687!1.14e-16!143;DOID:14566!1.07e-08!239;DOID:162!1.62e-07!235 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!1.71e-12!169;UBERON:0000925!1.71e-12!169;UBERON:0006595!1.71e-12!169;UBERON:0001007!3.18e-12!155;UBERON:0001555!3.18e-12!155;UBERON:0007026!3.18e-12!155;UBERON:0004921!5.85e-11!129;UBERON:0004185!5.85e-11!129;UBERON:0005911!1.83e-10!82;UBERON:0005153!1.32e-09!37;UBERON:0000077!1.96e-09!130;UBERON:0008947!4.17e-09!38;UBERON:0003258!4.17e-09!38;UBERON:0002367!7.11e-09!11;UBERON:0010147!7.11e-09!11;UBERON:0009846!7.11e-09!11;UBERON:0003353!7.11e-09!11;UBERON:0004902!7.11e-09!11;UBERON:0003820!7.11e-09!11;UBERON:0009847!7.11e-09!11;UBERON:0003104!2.69e-08!238;UBERON:0009142!2.69e-08!238;UBERON:0006554!4.44e-08!44;UBERON:0001737!4.93e-08!9;UBERON:0003937!6.81e-08!12;UBERON:0005399!6.81e-08!12;UBERON:0001008!9.63e-08!45;UBERON:0000065!9.75e-08!53;UBERON:0005157!1.24e-07!51;UBERON:0005631!1.27e-07!14;UBERON:0000158!1.27e-07!14;UBERON:0003064!1.45e-07!37;UBERON:0000162!1.47e-07!14;UBERON:0001353!1.47e-07!14;UBERON:0000163!1.47e-07!14;UBERON:0006866!1.47e-07!14;UBERON:0000164!1.47e-07!14;UBERON:0000931!1.47e-07!14;UBERON:0001048!6.88e-07!168;UBERON:0004122!7.50e-07!15;UBERON:0003101!9.42e-07!22;UBERON:0000079!9.42e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.43e-13;9!UBERON:0001557;5.43e-13;9!UBERON:0006853;1.66e-07;3!UBERON:0007685;1.66e-07;3!UBERON:0004134;1.66e-07;3!UBERON:0002367;3.52e-07;11!UBERON:0010147;3.52e-07;11!UBERON:0001225;9.35e-07;12!UBERON:0008987;9.35e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.35e-13,9;UBERON:0008947,1.23e-08,38;UBERON:0003258,1.23e-08,38;UBERON:0006853,2.49e-07,3;UBERON:0007685,2.49e-07,3;UBERON:0004134,2.49e-07,3;UBERON:0002367,4.21e-07,11;UBERON:0010147,4.21e-07,11;UBERON:0009846,4.21e-07,11;UBERON:0003353,4.21e-07,11;UBERON:0004902,4.21e-07,11;UBERON:0003820,4.21e-07,11;UBERON:0009847,4.21e-07,11;UBERON:0005153,5.19e-07,37;UBERON:0006554,9.26e-07,47 | |||
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| |||
|short_description=p12@GPRC5A | |||
}} |
Revision as of 21:44, 10 September 2013
Short description: | p12@GPRC5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_GPRC5A_5end |
Coexpression cluster: | C814_Alveolar_mesothelioma_bile_Renal_papillotubular_papillary_serous |
Association with transcript: | -393bp_to_ENST00000540125_5end |
EntrezGene: | GPRC5A |
HGNC: | 9836 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 2.03e-15 | 19 |
epithelial cell | 7.76e-09 | 253 |
epithelial cell of prostate | 1.99e-07 | 3 |
brush border epithelial cell | 2.49e-07 | 3 |
kidney cortex tubule cell | 2.49e-07 | 3 |
epithelial cell of proximal tubule | 2.49e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.35e-13 | 9 |
respiratory primordium | 1.23e-08 | 38 |
endoderm of foregut | 1.23e-08 | 38 |
renal cortex tubule | 2.49e-07 | 3 |
region of nephron tubule | 2.49e-07 | 3 |
proximal tubule | 2.49e-07 | 3 |
prostate gland | 4.21e-07 | 11 |
male accessory sex gland | 4.21e-07 | 11 |
embryonic cloacal epithelium | 4.21e-07 | 11 |
epithelium of hindgut | 4.21e-07 | 11 |
urogenital sinus epithelium | 4.21e-07 | 11 |
prostate bud | 4.21e-07 | 11 |
prostate field | 4.21e-07 | 11 |
epithelial bud | 5.19e-07 | 37 |
urinary system structure | 9.26e-07 | 47 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.