FFCP PHASE1:Hg19::chr12:47473707..47473757,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=347902|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24073|TSSclassifier=S|UniProt=Q86SJ2|association_with_transcript=0bp_to_ENST00000429635,NM_001143668,NM_181847,uc001rpk.2,uc001rpl.2,uc001rpm.2_5end|coexpression_cluster_id=C893|description=CAGE_peak_1_at_AMIGO2_5end|id=chr12:47473707..47473757,-|ontology_enrichment_celltype=CL:0000220!3.78e-09!246;CL:0002321!5.59e-09!248;CL:0000066!2.60e-08!254;CL:0000055!1.22e-07!180|ontology_enrichment_celltype_v019=CL:1000507;2.81e-07;10!CL:1000494;2.81e-07;10|ontology_enrichment_celltype_v019_2=CL:0002321,7.87e-09,250;CL:0000066,8.93e-09,253;CL:1000507,2.73e-07,10;CL:1000494,2.73e-07,10;CL:0002076,3.40e-07,42;CL:0000359,9.88e-07,32|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:120!2.84e-08!27;DOID:193!6.14e-08!29;DOID:2394!2.10e-07!14|ontology_enrichment_disease_v019=DOID:120;1.32e-08;27!DOID:193;3.50e-08;29!DOID:2394;2.27e-07;14|ontology_enrichment_disease_v019_2=DOID:120,1.05e-08,27;DOID:193,2.84e-08,29;DOID:2394,2.07e-07,14|ontology_enrichment_uberon=UBERON:0000475!3.98e-14!365;UBERON:0002100!1.57e-10!216;UBERON:0000119!1.75e-09!312;UBERON:0000481!1.87e-09!347;UBERON:0000483!4.01e-09!309;UBERON:0003886!5.18e-09!63;UBERON:0003914!1.45e-08!118;UBERON:0004111!6.79e-08!241;UBERON:0000464!8.87e-08!104;UBERON:0000025!1.01e-07!194;UBERON:0000466!2.60e-07!126;UBERON:0001008!7.14e-07!45;UBERON:0002553!7.94e-07!70;UBERON:0006554!8.61e-07!44|ontology_enrichment_uberon_v019=UBERON:0004211;2.81e-07;10!UBERON:0009773;2.81e-07;10!UBERON:0001231;2.81e-07;10!UBERON:0004810;2.81e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0002100,6.52e-11,199;UBERON:0003914,3.17e-09,117;UBERON:0000119,6.35e-08,309;UBERON:0004111,1.15e-07,240;UBERON:0000483,1.38e-07,306;UBERON:0000025,2.49e-07,192;UBERON:0004810,2.73e-07,10;UBERON:0009569,4.97e-07,112|phase1_expression=3.08853244759946,2.5692062866918,4.93340414335899,27.0197905553452,5.36353313312745,6.10636966870258,15.1979926900986,0,0.783556884599516,15.7269719360966,11.1648186875588,0,1.58260186937072,0,0.331397375727916,4.70627602516243,6.62963980826375,8.76372108464848,8.29485757943862,4.55547914884115,5.50801866359483,3.13454721478088,3.72106783270374,1.23186982565596,8.913527411231,0,0,0,0.786728553697808,1.91914699048606,0.928896739896456,11.0330546937471,25.6025030961513,14.0506523863379,0,0,0.293600439334847,1.66198622559563,0.401088894940283,0.868043482863407,0.223915474239924,0.647787332037959,0,0.145398238779565,0.755751887377619,0,0,0.411167888021826,0,0,0,0,0.344745680736619,0,0,0,0,0.224723484445085,0,0.320929027076094,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.36910889009705,1.77901850772711,1.70692089026603,2.40237592221607,2.87376219977242,2.64417949113945,1.90810750907073,0.569212969109448,1.17447437874188,0.764546456250458,0,1.12101712596307,0.263384084775077,2.16380747125216,1.57204305099666,1.85041349099558,0,0.977766799900771,0.946895611469467,0,0,0.589211814949674,0.221533894583621,1.08321545506006,0,0,0.328875809207352,0.276350017785848,0.289803085735052,2.52087157375503,2.67540828089713,0,0.226618685395132,2.29932296161153,1.03088233644789,0.506039384039006,6.05274287215784,6.51083453856419,5.70271226669025,3.61380285786655,3.4556385011693,6.24653632761729,2.60454977248419,5.74789597844733,4.83856183739358,6.15112450302067,4.05508330871837,9.75227465255847,27.4987352478491,2.9408389224012,0.361439152384566,3.00802746381534,1.59331170856906,12.7245751528176,11.1926020169606,5.19941494402373,20.842563361481,15.4589222819902,6.28699562389021,8.74308691902101,2.22470665670658,0.324547393654683,0.696518949197069,0,6.43924685624423,8.00792875092179,7.05769252526173,0.79504962946682,1.72046919021225,2.42998351125316,5.6530794192401,3.77549492588915,1.37559020970034,0.417989933073621,1.03366703667732,1.42306505074684,2.67776490211736,0,0,0,1.47065232138347,1.62028389576352,1.3394959242612,0.898117490504679,1.0135033243499,3.06633274931766,0,1.28241220751285,1.31780417436063,0,28.3461133892647,2.48485975847659,14.0559867947684,2.1185468930115,4.30254931123221,6.02936249737207,7.28880880184999,39.4971284199908,85.1003042039202,3.11211035399766,9.29503637280848,6.21155231831143,4.54072282934794,1.72852777344,0.234321431833797,0,1.1409436430889,0.149448680551801,0.117434498643765,0.161872944368132,0.140450806702248,0,0.368502951935304,0.309977343527296,10.6920257155385,3.95627086845691,0,2.87447256726495,0.336672227908132,0.375355559615893,0,16.242171972591,19.3087311353382,3.45547535485173,20.3043607856438,8.07253360599879,8.32873816392413,7.62954844174423,8.70264178644767,7.9350447513598,22.1570864439241,30.5231644383807,2.70042131586026,13.1539956967618,6.31084435610286,13.7154348977026,3.23292113637624,17.0404604407975,16.9263525022436,10.5127567232502,25.1239109112286,40.6391719680344,35.8505744236255,0.731842236777572,1.45782745153634,4.76395165765025,3.00617059544574,2.01856680700503,0.36497735907583,1.564495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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=347902 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24073 | |||
|TSSclassifier=S | |||
|UniProt=Q86SJ2 | |||
|association_with_transcript=0bp_to_ENST00000429635,NM_001143668,NM_181847,uc001rpk.2,uc001rpl.2,uc001rpm.2_5end | |||
|coexpression_cluster_id=C893 | |||
|description=CAGE_peak_1_at_AMIGO2_5end | |||
|id=chr12:47473707..47473757,- | |||
|ontology_enrichment_celltype=CL:0000220!3.78e-09!246;CL:0002321!5.59e-09!248;CL:0000066!2.60e-08!254;CL:0000055!1.22e-07!180 | |||
|ontology_enrichment_celltype_v019=CL:1000507;2.81e-07;10!CL:1000494;2.81e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,7.87e-09,250;CL:0000066,8.93e-09,253;CL:1000507,2.73e-07,10;CL:1000494,2.73e-07,10;CL:0002076,3.40e-07,42;CL:0000359,9.88e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:120!2.84e-08!27;DOID:193!6.14e-08!29;DOID:2394!2.10e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:120;1.32e-08;27!DOID:193;3.50e-08;29!DOID:2394;2.27e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:120,1.05e-08,27;DOID:193,2.84e-08,29;DOID:2394,2.07e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!3.98e-14!365;UBERON:0002100!1.57e-10!216;UBERON:0000119!1.75e-09!312;UBERON:0000481!1.87e-09!347;UBERON:0000483!4.01e-09!309;UBERON:0003886!5.18e-09!63;UBERON:0003914!1.45e-08!118;UBERON:0004111!6.79e-08!241;UBERON:0000464!8.87e-08!104;UBERON:0000025!1.01e-07!194;UBERON:0000466!2.60e-07!126;UBERON:0001008!7.14e-07!45;UBERON:0002553!7.94e-07!70;UBERON:0006554!8.61e-07!44 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.81e-07;10!UBERON:0009773;2.81e-07;10!UBERON:0001231;2.81e-07;10!UBERON:0004810;2.81e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,6.52e-11,199;UBERON:0003914,3.17e-09,117;UBERON:0000119,6.35e-08,309;UBERON:0004111,1.15e-07,240;UBERON:0000483,1.38e-07,306;UBERON:0000025,2.49e-07,192;UBERON:0004810,2.73e-07,10;UBERON:0009569,4.97e-07,112 | |||
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| |||
|short_description=p1@AMIGO2 | |||
}} |
Revision as of 22:45, 10 September 2013
Short description: | p1@AMIGO2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_AMIGO2_5end |
Coexpression cluster: | C893_osteoclastoma_Urothelial_tubular_nonsmall_Mesenchymal_Renal_hepatic |
Association with transcript: | 0bp_to_ENST00000429635, NM_001143668, NM_181847, uc001rpk.2, uc001rpl.2, uc001rpm.2_5end |
EntrezGene: | AMIGO2 |
HGNC: | 24073 |
UniProt: | Q86SJ2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 7.87e-09 | 250 |
epithelial cell | 8.93e-09 | 253 |
kidney tubule cell | 2.73e-07 | 10 |
nephron tubule epithelial cell | 2.73e-07 | 10 |
endo-epithelial cell | 3.40e-07 | 42 |
vascular associated smooth muscle cell | 9.88e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
trunk | 6.52e-11 | 199 |
epithelial tube | 3.17e-09 | 117 |
cell layer | 6.35e-08 | 309 |
anatomical conduit | 1.15e-07 | 240 |
epithelium | 1.38e-07 | 306 |
tube | 2.49e-07 | 192 |
nephron tubule epithelium | 2.73e-07 | 10 |
subdivision of trunk | 4.97e-07 | 112 |
Ontology term | p-value | n |
---|---|---|
female reproductive organ cancer | 1.05e-08 | 27 |
reproductive organ cancer | 2.84e-08 | 29 |
ovarian cancer | 2.07e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.