FFCP PHASE1:Hg19::chr12:57623963..57623989,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6472|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10852|TSSclassifier=S|UniProt=|association_with_transcript=9bp_to_ENST00000557302_5end|coexpression_cluster_id=C2221|description=CAGE_peak_4_at_SHMT2_5end|id=chr12:57623963..57623989,+|ontology_enrichment_celltype=CL:0000548!1.86e-30!679;CL:0000004!1.86e-30!679;CL:0000255!1.86e-30!679;CL:0000012!3.37e-29!682;CL:0000144!5.57e-21!625;CL:0002371!3.19e-18!591;CL:0000003!1.60e-17!722;CL:0000063!1.86e-17!578;CL:0000055!8.20e-17!180;CL:0000057!1.67e-12!75;CL:0002321!4.66e-12!248;CL:0000220!5.08e-12!246;CL:0000066!4.41e-11!254;CL:0000222!4.57e-10!119;CL:0000048!9.03e-07!430;CL:0000359!9.87e-07!32|ontology_enrichment_celltype_v019=CL:0000359;8.35e-07;32|ontology_enrichment_celltype_v019_2=CL:0000057,1.97e-12,76;CL:0002321,3.78e-10,250;CL:0000222,5.54e-10,121;CL:0000048,2.20e-07,427;CL:0000723,2.65e-07,433;CL:0000066,2.84e-07,253;CL:0000359,3.11e-07,32;CL:0000192,3.81e-07,43;CL:0000514,3.81e-07,43;CL:0000034,9.70e-07,441|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004872!1.95e-11!84;UBERON:0000055!3.18e-11!69;UBERON:0001981!1.11e-10!60;UBERON:0007500!1.11e-10!60;UBERON:0004537!1.11e-10!60;UBERON:0006965!1.11e-10!60;UBERON:0002049!2.07e-10!79;UBERON:0007798!2.07e-10!79;UBERON:0003914!3.12e-10!118;UBERON:0001637!9.65e-10!42;UBERON:0003509!9.65e-10!42;UBERON:0004572!9.65e-10!42;UBERON:0000490!1.41e-08!138;UBERON:0004573!9.83e-08!33;UBERON:0004571!9.83e-08!33;UBERON:0002100!1.75e-07!216;UBERON:0004535!2.80e-07!110|ontology_enrichment_uberon_v019=UBERON:0001637;7.93e-08;42!UBERON:0003509;7.93e-08;42!UBERON:0004572;7.93e-08;42!UBERON:0004573;1.28e-07;33!UBERON:0004571;1.28e-07;33!UBERON:0007500;3.19e-07;56!UBERON:0001981;3.19e-07;56!UBERON:0004537;3.19e-07;56|ontology_enrichment_uberon_v019_2=UBERON:0004872,2.58e-11,83;UBERON:0000055,3.73e-11,68;UBERON:0003914,1.23e-10,117;UBERON:0007500,1.23e-10,59;UBERON:0001981,1.23e-10,59;UBERON:0004537,1.23e-10,59;UBERON:0006965,1.23e-10,59;UBERON:0001637,1.62e-10,42;UBERON:0003509,1.62e-10,42;UBERON:0004572,1.62e-10,42;UBERON:0002049,4.62e-10,78;UBERON:0007798,4.62e-10,78;UBERON:0000490,1.42e-08,148;UBERON:0004573,2.83e-08,33;UBERON:0004571,2.83e-08,33;UBERON:0004535,7.75e-08,109;UBERON:0002100,2.94e-07,199;UBERON:0001009,4.70e-07,112|phase1_expression=8.3572054464456,4.28201047781966,7.89344662937438,8.00586386825043,8.04529969969118,9.59572376510406,2.53299878168311,3.15859936713415,3.13422753839806,1.47440361900905,7.6758128476967,0.218441372130172,0.791300934685361,0.247532705920093,0,2.01697543935533,1.20538905604795,1.46062018077475,1.46379839637152,0,0,1.25381888591235,0.286235987131057,0,0.125542639594803,0.993374274723366,0.410502947249729,0.787107813136792,0.393364276848904,0.383829398097213,0.309632246632152,2.75826367343678,1.50602959389125,14.4204063965047,0.774672005803016,0.142169232487422,0,0,0.200544447470142,0,0.223915474239924,0,0.257575567634187,0,0.377875943688809,0.242584061187816,1.16214518452842,5.75635043230556,3.40677007984614,1.7261543539329,4.61089271752381,2.12834006899727,2.06847408441971,2.5819387343353,1.35426486594342,0.188242339542605,2.45615535052061,1.57306439111559,3.67300670845083,6.41858054152187,8.95071976118658,0,0.598390972864896,0.852449501065388,6.38460324982885,13.0498601678962,10.5879782329248,0.502497330513487,3.65038042894141,0.868755378820466,3.02699751316684,8.10210799172642,9.81033401066742,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.01210257911091,6.52099065402005,6.86734389530676,20.0535164254356,14.3398053771215,3.1811437882044,12.1658717575659,0.189069634328136,0.221729397462564,0.263504357079378,0.0654895377488563,6.19301990097322,2.22470665670658,0.324547393654683,0.348259474598534,0,0,0,0,11.3294572199022,1.72046919021225,4.85996702250632,2.82653970962005,4.61449379830897,6.32771496462155,4.59788926380983,0.775250277507987,0,2.00832367658802,1.20848795132744,3.80136052859256,0.976248230192678,4.04429388380456,4.86085168729056,1.60739510911344,2.46982309888787,4.50445921933289,6.13266549863533,10.4419222552494,5.31285057398181,0,0,3.48875241714027,7.9515512271251,4.05217637326655,3.04541115870403,4.87622255272983,1.77334191099179,3.36406560085384,9.60740961567345,9.37336683985208,0.933633106199299,9.69916838901754,2.45192854670188,4.69208025699287,4.03323147135999,28.821536115557,0.624320153660641,5.13424639390004,2.24173020827702,5.28455243896942,3.39933183173076,0.98315564691574,1.63323337003915,1.10550885580591,8.98934296229159,4.75201142912821,9.39614331258516,10.0117749813183,24.4330168217521,1.0100166837244,1.87677779807946,1.10825646193673,3.5118209670467,5.21029252858333,8.71380741658261,2.26864366320042,1.07633781413317,10.6778694409284,6.99375273826554,2.40072876867522,7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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6472 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10852 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=9bp_to_ENST00000557302_5end | |||
|coexpression_cluster_id=C2221 | |||
|description=CAGE_peak_4_at_SHMT2_5end | |||
|id=chr12:57623963..57623989,+ | |||
|ontology_enrichment_celltype=CL:0000548!1.86e-30!679;CL:0000004!1.86e-30!679;CL:0000255!1.86e-30!679;CL:0000012!3.37e-29!682;CL:0000144!5.57e-21!625;CL:0002371!3.19e-18!591;CL:0000003!1.60e-17!722;CL:0000063!1.86e-17!578;CL:0000055!8.20e-17!180;CL:0000057!1.67e-12!75;CL:0002321!4.66e-12!248;CL:0000220!5.08e-12!246;CL:0000066!4.41e-11!254;CL:0000222!4.57e-10!119;CL:0000048!9.03e-07!430;CL:0000359!9.87e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0000359;8.35e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.97e-12,76;CL:0002321,3.78e-10,250;CL:0000222,5.54e-10,121;CL:0000048,2.20e-07,427;CL:0000723,2.65e-07,433;CL:0000066,2.84e-07,253;CL:0000359,3.11e-07,32;CL:0000192,3.81e-07,43;CL:0000514,3.81e-07,43;CL:0000034,9.70e-07,441 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!1.95e-11!84;UBERON:0000055!3.18e-11!69;UBERON:0001981!1.11e-10!60;UBERON:0007500!1.11e-10!60;UBERON:0004537!1.11e-10!60;UBERON:0006965!1.11e-10!60;UBERON:0002049!2.07e-10!79;UBERON:0007798!2.07e-10!79;UBERON:0003914!3.12e-10!118;UBERON:0001637!9.65e-10!42;UBERON:0003509!9.65e-10!42;UBERON:0004572!9.65e-10!42;UBERON:0000490!1.41e-08!138;UBERON:0004573!9.83e-08!33;UBERON:0004571!9.83e-08!33;UBERON:0002100!1.75e-07!216;UBERON:0004535!2.80e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;7.93e-08;42!UBERON:0003509;7.93e-08;42!UBERON:0004572;7.93e-08;42!UBERON:0004573;1.28e-07;33!UBERON:0004571;1.28e-07;33!UBERON:0007500;3.19e-07;56!UBERON:0001981;3.19e-07;56!UBERON:0004537;3.19e-07;56 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,2.58e-11,83;UBERON:0000055,3.73e-11,68;UBERON:0003914,1.23e-10,117;UBERON:0007500,1.23e-10,59;UBERON:0001981,1.23e-10,59;UBERON:0004537,1.23e-10,59;UBERON:0006965,1.23e-10,59;UBERON:0001637,1.62e-10,42;UBERON:0003509,1.62e-10,42;UBERON:0004572,1.62e-10,42;UBERON:0002049,4.62e-10,78;UBERON:0007798,4.62e-10,78;UBERON:0000490,1.42e-08,148;UBERON:0004573,2.83e-08,33;UBERON:0004571,2.83e-08,33;UBERON:0004535,7.75e-08,109;UBERON:0002100,2.94e-07,199;UBERON:0001009,4.70e-07,112 | |||
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| |||
|short_description=p4@SHMT2 | |||
}} |
Revision as of 23:38, 10 September 2013
Short description: | p4@SHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SHMT2_5end |
Coexpression cluster: | C2221_Mesenchymal_Fibroblast_Keratocytes_Keratinocyte_Osteoblast_mesenchymal_Hepatocyte |
Association with transcript: | 9bp_to_ENST00000557302_5end |
EntrezGene: | SHMT2 |
HGNC: | 10852 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.97e-12 | 76 |
embryonic cell | 3.78e-10 | 250 |
mesodermal cell | 5.54e-10 | 121 |
multi fate stem cell | 2.20e-07 | 427 |
somatic stem cell | 2.65e-07 | 433 |
epithelial cell | 2.84e-07 | 253 |
vascular associated smooth muscle cell | 3.11e-07 | 32 |
smooth muscle cell | 3.81e-07 | 43 |
smooth muscle myoblast | 3.81e-07 | 43 |
stem cell | 9.70e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 2.58e-11 | 83 |
vessel | 3.73e-11 | 68 |
epithelial tube | 1.23e-10 | 117 |
epithelial tube open at both ends | 1.23e-10 | 59 |
blood vessel | 1.23e-10 | 59 |
blood vasculature | 1.23e-10 | 59 |
vascular cord | 1.23e-10 | 59 |
artery | 1.62e-10 | 42 |
arterial blood vessel | 1.62e-10 | 42 |
arterial system | 1.62e-10 | 42 |
vasculature | 4.62e-10 | 78 |
vascular system | 4.62e-10 | 78 |
unilaminar epithelium | 1.42e-08 | 148 |
systemic artery | 2.83e-08 | 33 |
systemic arterial system | 2.83e-08 | 33 |
cardiovascular system | 7.75e-08 | 109 |
trunk | 2.94e-07 | 199 |
circulatory system | 4.70e-07 | 112 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.