FFCP PHASE1:Hg19::chr12:67463617..67463639,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1683|description=CAGE_peak_at_chr12:67463617..67463639,-|id=chr12:67463617..67463639,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000174;1.96e-09;3!CL:0002541;3.53e-09;3!CL:0000167;4.56e-08;1!CL:0000164;4.56e-08;1!CL:0000502;4.56e-08;1!CL:0000172;4.56e-08;1!CL:0000173;4.56e-08;1!CL:0002174;1.68e-07;1!CL:0000501;1.68e-07;1!CL:0000163;5.35e-07;9|ontology_enrichment_celltype_v019_2=CL:0000174,1.81e-09,3;CL:0002541,4.01e-09,3;CL:0000167,4.57e-08,1;CL:0000164,4.57e-08,1;CL:0000502,4.57e-08,1;CL:0000172,4.57e-08,1;CL:0000173,4.57e-08,1;CL:0002351,4.57e-08,1;CL:0002174,1.58e-07,1;CL:0000501,1.58e-07,1;CL:0000163,5.14e-07,9|ontology_enrichment_development_v019=CL:0002351;4.56e-08;1!UBERON:0003124;5.04e-08;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:1799;4.27e-08;1!DOID:10165;4.27e-08;1!DOID:1798;4.27e-08;1!DOID:4430;4.56e-08;1|ontology_enrichment_disease_v019_2=DOID:1799,4.28e-08,1;DOID:10165,4.28e-08,1;DOID:1798,4.28e-08,1;DOID:4430,4.57e-08,1|ontology_enrichment_uberon=UBERON:0002780!3.17e-12!41;UBERON:0001890!3.17e-12!41;UBERON:0006240!3.17e-12!41;UBERON:0003056!4.87e-12!61;UBERON:0001893!7.38e-12!34;UBERON:0003080!9.61e-12!42;UBERON:0003075!1.07e-11!86;UBERON:0007284!1.07e-11!86;UBERON:0002791!2.54e-11!33;UBERON:0001049!2.99e-11!57;UBERON:0005068!2.99e-11!57;UBERON:0006241!2.99e-11!57;UBERON:0007135!2.99e-11!57;UBERON:0002020!6.43e-11!34;UBERON:0003528!6.43e-11!34;UBERON:0001869!6.48e-11!32;UBERON:0002346!1.25e-10!90;UBERON:0007023!4.43e-10!115;UBERON:0001017!9.57e-10!82;UBERON:0004121!1.26e-09!169;UBERON:0005743!2.24e-09!86;UBERON:0000073!2.36e-09!94;UBERON:0001016!2.36e-09!94;UBERON:0000924!5.07e-09!173;UBERON:0006601!5.07e-09!173;UBERON:0000956!6.67e-09!25;UBERON:0000203!6.67e-09!25;UBERON:0002616!8.90e-09!59;UBERON:0000153!1.67e-08!129;UBERON:0007811!1.67e-08!129;UBERON:0000033!2.34e-08!123;UBERON:0000955!2.47e-08!69;UBERON:0006238!2.47e-08!69;UBERON:0001950!2.93e-08!20;UBERON:0002619!3.69e-08!22|ontology_enrichment_uberon_v019=UBERON:0003124;3.53e-09;3!UBERON:0000920;3.53e-09;3!UBERON:0001000;5.04e-08;1!UBERON:0005352;5.04e-08;1!UBERON:0000997;1.68e-07;1!UBERON:0005056;1.68e-07;1!UBERON:0004176;1.68e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0000920,4.01e-09,3;UBERON:0003124,1.14e-08,7;UBERON:0001000,5.22e-08,1;UBERON:0005352,5.22e-08,1;UBERON:0000997,2.80e-07,1;UBERON:0005056,2.80e-07,1|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.189069634328136,0.221729397462564,0.43917392846563,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0.193260853163297,0.272746120590835,0.573609190778008,1.46368447355514,0.265059536642971,0.464775771478074,0.829288440122964,0.756962552626885,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0.579652024875384,0,0,0,0,0,2.57545848628462,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502548796003046,0,0,0,0,0.12269149171914,0,0,0,0,0,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.184161977871793,0,0,0.131124414959424,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23649213977267,0,0,0,0,0,0,0,0,0,0,0.145016693914229,0,0,0,0.192190067365106,0.893288987462089,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941438007767792,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,2.88743956579008,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0,0,0,0,0.47748896947538,0,0.307160702099232,0.994147647766298,0.703347082052564,0.333926115068718,0,0,0.398495976502139,0.552567831062295,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0.278304294485554,0,0.520855522170466,0.0874599999961957,0,0.227586896570999,0,0,0.344743373241465,0.291604613383254,0.347249989866585,0,0.361789315876224,0,0.110579259931225,0.295547618953547,0,0,0,0.0769502585037971,0,0.23056390438806,2.69272933229316,1.52106320690811,1.5950057986596,0.366390373607449,1.06606955203727,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,2.98578579323551,0.0884575645033392,0,0,0.123563938946503,0,0.134802265961354,0,0,0,0,0,3.156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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1683 | |||
|description=CAGE_peak_at_chr12:67463617..67463639,- | |||
|id=chr12:67463617..67463639,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000174;1.96e-09;3!CL:0002541;3.53e-09;3!CL:0000167;4.56e-08;1!CL:0000164;4.56e-08;1!CL:0000502;4.56e-08;1!CL:0000172;4.56e-08;1!CL:0000173;4.56e-08;1!CL:0002174;1.68e-07;1!CL:0000501;1.68e-07;1!CL:0000163;5.35e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000174,1.81e-09,3;CL:0002541,4.01e-09,3;CL:0000167,4.57e-08,1;CL:0000164,4.57e-08,1;CL:0000502,4.57e-08,1;CL:0000172,4.57e-08,1;CL:0000173,4.57e-08,1;CL:0002351,4.57e-08,1;CL:0002174,1.58e-07,1;CL:0000501,1.58e-07,1;CL:0000163,5.14e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002351;4.56e-08;1!UBERON:0003124;5.04e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1799;4.27e-08;1!DOID:10165;4.27e-08;1!DOID:1798;4.27e-08;1!DOID:4430;4.56e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,4.28e-08,1;DOID:10165,4.28e-08,1;DOID:1798,4.28e-08,1;DOID:4430,4.57e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0002780!3.17e-12!41;UBERON:0001890!3.17e-12!41;UBERON:0006240!3.17e-12!41;UBERON:0003056!4.87e-12!61;UBERON:0001893!7.38e-12!34;UBERON:0003080!9.61e-12!42;UBERON:0003075!1.07e-11!86;UBERON:0007284!1.07e-11!86;UBERON:0002791!2.54e-11!33;UBERON:0001049!2.99e-11!57;UBERON:0005068!2.99e-11!57;UBERON:0006241!2.99e-11!57;UBERON:0007135!2.99e-11!57;UBERON:0002020!6.43e-11!34;UBERON:0003528!6.43e-11!34;UBERON:0001869!6.48e-11!32;UBERON:0002346!1.25e-10!90;UBERON:0007023!4.43e-10!115;UBERON:0001017!9.57e-10!82;UBERON:0004121!1.26e-09!169;UBERON:0005743!2.24e-09!86;UBERON:0000073!2.36e-09!94;UBERON:0001016!2.36e-09!94;UBERON:0000924!5.07e-09!173;UBERON:0006601!5.07e-09!173;UBERON:0000956!6.67e-09!25;UBERON:0000203!6.67e-09!25;UBERON:0002616!8.90e-09!59;UBERON:0000153!1.67e-08!129;UBERON:0007811!1.67e-08!129;UBERON:0000033!2.34e-08!123;UBERON:0000955!2.47e-08!69;UBERON:0006238!2.47e-08!69;UBERON:0001950!2.93e-08!20;UBERON:0002619!3.69e-08!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;3.53e-09;3!UBERON:0000920;3.53e-09;3!UBERON:0001000;5.04e-08;1!UBERON:0005352;5.04e-08;1!UBERON:0000997;1.68e-07;1!UBERON:0005056;1.68e-07;1!UBERON:0004176;1.68e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,4.01e-09,3;UBERON:0003124,1.14e-08,7;UBERON:0001000,5.22e-08,1;UBERON:0005352,5.22e-08,1;UBERON:0000997,2.80e-07,1;UBERON:0005056,2.80e-07,1 | |||
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|short_description=p@chr12:67463617..67463639,- | |||
}} |
Revision as of 00:03, 11 September 2013
Short description: | p@chr12:67463617..67463639, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:67463617..67463639, - |
Coexpression cluster: | C1683_pancreatic_somatostatinoma_temporal_mesothelioma_occipital_seminal_parietal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
steroid hormone secreting cell | 1.81e-09 | 3 |
chorionic membrane mesenchymal stem cell | 4.01e-09 | 3 |
peptide hormone secreting cell | 4.57e-08 | 1 |
enteroendocrine cell | 4.57e-08 | 1 |
type D enteroendocrine cell | 4.57e-08 | 1 |
somatostatin secreting cell | 4.57e-08 | 1 |
pancreatic D cell | 4.57e-08 | 1 |
progenitor cell of endocrine pancreas | 4.57e-08 | 1 |
follicular cell of ovary | 1.58e-07 | 1 |
granulosa cell | 1.58e-07 | 1 |
endocrine cell | 5.14e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 4.01e-09 | 3 |
chorion | 1.14e-08 | 7 |
vas deferens | 5.22e-08 | 1 |
spermatic cord | 5.22e-08 | 1 |
mammalian vulva | 2.80e-07 | 1 |
external female genitalia | 2.80e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 4.28e-08 | 1 |
endocrine pancreas cancer | 4.28e-08 | 1 |
pancreatic endocrine carcinoma | 4.28e-08 | 1 |
somatostatinoma | 4.57e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.