FFCP PHASE1:Hg19::chr17:15555156..15555180,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10626|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=17241|TSSclassifier=S|UniProt=Q59EB2|association_with_transcript=79bp_to_uc002gor.1_5end|description=CAGE_peak_2_at_TRIM16_5end|id=chr17:15555156..15555180,-|ontology_enrichment_celltype=CL:0000066!1.59e-28!254;CL:0000076!1.02e-08!62;CL:0002076!1.66e-07!43|ontology_enrichment_celltype_v019=CL:1000497;7.09e-08;17!CL:0002518;7.09e-08;17!CL:1000449;4.75e-07;15!CL:0002681;9.79e-07;12!CL:0002584;9.79e-07;12|ontology_enrichment_celltype_v019_2=CL:0000066,8.96e-39,253;CL:0000076,6.90e-12,63;CL:1000497,6.59e-08,17;CL:0002518,6.59e-08,17;CL:1000449,4.25e-07,15;CL:0002076,4.42e-07,42;CL:0000077,9.98e-07,19|ontology_enrichment_development_v019=UBERON:0008947;8.39e-07;29|ontology_enrichment_disease=DOID:305!9.99e-13!106;DOID:0050687!2.23e-07!143|ontology_enrichment_disease_v019=DOID:1749;7.17e-10;14|ontology_enrichment_disease_v019_2=DOID:305,6.04e-17,106;DOID:0050687,7.43e-10,143;DOID:1749,8.44e-10,14;DOID:162,3.27e-08,235;DOID:14566,1.33e-07,239|ontology_enrichment_uberon=UBERON:0000064!4.54e-15!219;UBERON:0004119!5.97e-09!169;UBERON:0000925!5.97e-09!169;UBERON:0006595!5.97e-09!169;UBERON:0000065!2.18e-08!53;UBERON:0000062!2.56e-08!511;UBERON:0000072!4.73e-08!46;UBERON:0008947!5.07e-08!38;UBERON:0003258!5.07e-08!38;UBERON:0001004!5.63e-08!72;UBERON:0000477!6.99e-08!286;UBERON:0000063!9.58e-08!97;UBERON:0000468!1.95e-07!659;UBERON:0000481!2.46e-07!347;UBERON:0000467!8.04e-07!625;UBERON:0000475!9.53e-07!365|ontology_enrichment_uberon_v019=UBERON:0001737;8.85e-09;9!UBERON:0001557;8.85e-09;9!UBERON:0000072;8.93e-09;37!UBERON:0000065;1.90e-07;44!UBERON:0006554;1.93e-07;30!UBERON:0001008;1.93e-07;30!UBERON:0006555;4.75e-07;15!UBERON:0000353;4.75e-07;15!UBERON:0004819;4.75e-07;15!UBERON:0001285;4.75e-07;15!UBERON:0007684;4.75e-07;15!UBERON:0000489;5.55e-07;29!UBERON:0001225;9.79e-07;12!UBERON:0008987;9.79e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0000072,2.24e-10,47;UBERON:0000065,5.69e-10,54;UBERON:0001004,8.01e-10,74;UBERON:0008947,1.11e-09,38;UBERON:0003258,1.11e-09,38;UBERON:0005631,3.44e-09,14;UBERON:0000158,3.44e-09,14;UBERON:0001737,1.01e-08,9;UBERON:0004119,1.92e-08,160;UBERON:0000925,1.92e-08,160;UBERON:0006595,1.92e-08,160;UBERON:0001557,2.43e-07,19;UBERON:0000353,3.92e-07,15;UBERON:0004211,4.25e-07,15;UBERON:0009773,4.25e-07,15;UBERON:0001231,4.25e-07,15;UBERON:0001285,4.25e-07,15;UBERON:0007684,4.25e-07,15;UBERON:0004208,4.25e-07,15;UBERON:0003124,4.52e-07,7;UBERON:0001041,8.38e-07,87|phase1_expression=0,0.428201047781966,0.140954404095971,0,1.34088328328186,0,0,0,0,11.3037610790694,7.6758128476967,2.40285509343189,1.58260186937072,0.37129905888014,0,1.34465029290355,0.602694528023977,1.46062018077475,0.975865597581014,0.123121058076788,0.204000691244253,0.313454721478088,0,0.547497700291537,0.627713197974014,0,0.0821005894499457,0.0787107813136792,0,0,0.154816123316076,0.919421224478927,2.10844143144775,2.21852406100073,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0.485168122375632,0.232429036905685,0,0.929119112685311,0.575384784644301,0.512321413058201,0,0.344745680736619,0.645484683583826,0,0.564727018627814,1.09162460023138,0.449446968890169,0.306083892370903,0,0,0.659702600373432,0.199463657621632,0,0.290209238628584,0,0,0.251248665256743,0.521482918420201,0,0.605399502633369,1.84138817993782,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0.205601498999509,0,0,0,0,0.222820913770347,0,0.221533894583621,0,0.128091319725675,0,0.164437904603676,0.276350017785848,0.289803085735052,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,0,0.50133791063589,0.434539556882471,0,0,2.9305793320861,6.20842312895179,7.46595678391571,0.916853528483988,4.37154345951051,2.59549109949101,0.324547393654683,0.348259474598534,0.132957960518865,0,0,0,1.19257444420023,1.72046919021225,0.347140501607594,0.56530794192401,1.67799774483962,0.550236083880135,1.04497483268405,0.516833518338658,0.35576626268671,1.67360306382335,3.62546385398232,0,14.1555993377938,0.367663080345869,1.62028389576352,0,0.22452937262617,0.225222960966644,0,0,0.549605231791222,0,0,2.18047026071267,0,0.759783069987479,0.397227542439656,0.573673241497627,0.709336764396714,1.12135520028461,3.20246987189115,1.2333377420858,0.311211035399766,0.134710672069688,0,0.605429710579726,0,0.70296429550139,0,0,0,0,0.323745888736263,0.280901613404497,0.61246251376468,0.122834317311768,0.413303124703062,0,0.247266929278557,0,0,1.0100166837244,0.500474079487857,0.277064115484183,0,0,0.751190294532984,0.340296549480063,0.179389635688862,0.85422955527427,0.423863802319124,0.300091096084402,0.618315175430633,0.257640540045629,1.11670113798954,0,0.292311015483596,0,0.828449087780694,0.969876340912871,0,0.403008392910561,0.169560592310488,3.86521706326594,4.09119180886252,1.43402297694502,0,0,0.232387885739037,1.14027160516907,0.504641701751257,0.36497735907583,3.12899064659632,2.57296375277154,1.3813492135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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10626 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17241 | |||
|TSSclassifier=S | |||
|UniProt=Q59EB2 | |||
|association_with_transcript=79bp_to_uc002gor.1_5end | |||
|description=CAGE_peak_2_at_TRIM16_5end | |||
|id=chr17:15555156..15555180,- | |||
|ontology_enrichment_celltype=CL:0000066!1.59e-28!254;CL:0000076!1.02e-08!62;CL:0002076!1.66e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:1000497;7.09e-08;17!CL:0002518;7.09e-08;17!CL:1000449;4.75e-07;15!CL:0002681;9.79e-07;12!CL:0002584;9.79e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.96e-39,253;CL:0000076,6.90e-12,63;CL:1000497,6.59e-08,17;CL:0002518,6.59e-08,17;CL:1000449,4.25e-07,15;CL:0002076,4.42e-07,42;CL:0000077,9.98e-07,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.39e-07;29 | |||
|ontology_enrichment_disease=DOID:305!9.99e-13!106;DOID:0050687!2.23e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.17e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,6.04e-17,106;DOID:0050687,7.43e-10,143;DOID:1749,8.44e-10,14;DOID:162,3.27e-08,235;DOID:14566,1.33e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0000064!4.54e-15!219;UBERON:0004119!5.97e-09!169;UBERON:0000925!5.97e-09!169;UBERON:0006595!5.97e-09!169;UBERON:0000065!2.18e-08!53;UBERON:0000062!2.56e-08!511;UBERON:0000072!4.73e-08!46;UBERON:0008947!5.07e-08!38;UBERON:0003258!5.07e-08!38;UBERON:0001004!5.63e-08!72;UBERON:0000477!6.99e-08!286;UBERON:0000063!9.58e-08!97;UBERON:0000468!1.95e-07!659;UBERON:0000481!2.46e-07!347;UBERON:0000467!8.04e-07!625;UBERON:0000475!9.53e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;8.85e-09;9!UBERON:0001557;8.85e-09;9!UBERON:0000072;8.93e-09;37!UBERON:0000065;1.90e-07;44!UBERON:0006554;1.93e-07;30!UBERON:0001008;1.93e-07;30!UBERON:0006555;4.75e-07;15!UBERON:0000353;4.75e-07;15!UBERON:0004819;4.75e-07;15!UBERON:0001285;4.75e-07;15!UBERON:0007684;4.75e-07;15!UBERON:0000489;5.55e-07;29!UBERON:0001225;9.79e-07;12!UBERON:0008987;9.79e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000072,2.24e-10,47;UBERON:0000065,5.69e-10,54;UBERON:0001004,8.01e-10,74;UBERON:0008947,1.11e-09,38;UBERON:0003258,1.11e-09,38;UBERON:0005631,3.44e-09,14;UBERON:0000158,3.44e-09,14;UBERON:0001737,1.01e-08,9;UBERON:0004119,1.92e-08,160;UBERON:0000925,1.92e-08,160;UBERON:0006595,1.92e-08,160;UBERON:0001557,2.43e-07,19;UBERON:0000353,3.92e-07,15;UBERON:0004211,4.25e-07,15;UBERON:0009773,4.25e-07,15;UBERON:0001231,4.25e-07,15;UBERON:0001285,4.25e-07,15;UBERON:0007684,4.25e-07,15;UBERON:0004208,4.25e-07,15;UBERON:0003124,4.52e-07,7;UBERON:0001041,8.38e-07,87 | |||
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| |||
|short_description=p2@TRIM16 | |||
}} |
Revision as of 12:21, 11 September 2013
Short description: | p2@TRIM16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_TRIM16_5end |
Coexpression cluster: | NA |
Association with transcript: | 79bp_to_uc002gor.1_5end |
EntrezGene: | TRIM16 |
HGNC: | 17241 |
UniProt: | Q59EB2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.96e-39 | 253 |
squamous epithelial cell | 6.90e-12 | 63 |
kidney cell | 6.59e-08 | 17 |
kidney epithelial cell | 6.59e-08 | 17 |
epithelial cell of nephron | 4.25e-07 | 15 |
endo-epithelial cell | 4.42e-07 | 42 |
mesothelial cell | 9.98e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
segment of respiratory tract | 2.24e-10 | 47 |
respiratory tract | 5.69e-10 | 54 |
respiratory system | 8.01e-10 | 74 |
respiratory primordium | 1.11e-09 | 38 |
endoderm of foregut | 1.11e-09 | 38 |
extraembryonic membrane | 3.44e-09 | 14 |
membranous layer | 3.44e-09 | 14 |
larynx | 1.01e-08 | 9 |
endoderm-derived structure | 1.92e-08 | 160 |
endoderm | 1.92e-08 | 160 |
presumptive endoderm | 1.92e-08 | 160 |
upper respiratory tract | 2.43e-07 | 19 |
parenchyma | 3.92e-07 | 15 |
nephron epithelium | 4.25e-07 | 15 |
renal tubule | 4.25e-07 | 15 |
nephron tubule | 4.25e-07 | 15 |
nephron | 4.25e-07 | 15 |
uriniferous tubule | 4.25e-07 | 15 |
nephrogenic mesenchyme | 4.25e-07 | 15 |
chorion | 4.52e-07 | 7 |
foregut | 8.38e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 6.04e-17 | 106 |
cell type cancer | 7.43e-10 | 143 |
squamous cell carcinoma | 8.44e-10 | 14 |
cancer | 3.27e-08 | 235 |
disease of cellular proliferation | 1.33e-07 | 239 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.