FFCP PHASE1:Hg19::chr18:21452899..21452910,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3909|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6483|TSSclassifier=W|UniProt=B0YJ33,Q16787,Q6VU69|association_with_transcript=-73bp_to_NM_000227,NM_001127718,uc002kus.3,uc002kut.3_5end|coexpression_cluster_id=C363|description=CAGE_peak_2_at_LAMA3_5end|id=chr18:21452899..21452910,+|ontology_enrichment_celltype=CL:0002076!1.59e-32!43;CL:0000066!3.90e-29!254;CL:0000223!1.84e-24!59;CL:0002251!3.92e-17!21;CL:0002368!8.70e-13!13;CL:0002159!4.22e-11!13;CL:0000622!4.74e-08!5;CL:0002202!1.32e-07!9;CL:0002632!1.32e-07!9|ontology_enrichment_celltype_v019=CL:0002076;6.59e-24;42!CL:0002368;7.45e-16;13!CL:0002159;4.84e-15;14!CL:0000349;6.44e-13;19!CL:0000622;3.21e-11;5!CL:0002251;4.98e-11;20!CL:0000154;2.86e-09;6!CL:0000244;3.42e-09;4!CL:0000731;3.42e-09;4!CL:0002202;1.78e-08;9!CL:0002632;1.78e-08;9!CL:0002166;2.09e-08;3!CL:0002621;2.58e-08;3!CL:0002541;5.06e-08;3!CL:0002577;7.61e-08;3!CL:0000307;1.68e-07;3!CL:0002328;2.66e-07;3!CL:0002623;3.12e-07;3|ontology_enrichment_celltype_v019_2=CL:0002076,2.64e-31,42;CL:0000066,1.28e-28,253;CL:0000223,4.19e-22,58;CL:0002368,7.34e-16,13;CL:0002159,4.78e-15,14;CL:0000349,6.49e-13,19;CL:0000622,3.15e-11,5;CL:0002251,4.93e-11,20;CL:0000154,2.82e-09,6;CL:0000244,3.17e-09,4;CL:0000731,3.17e-09,4;CL:0002202,1.76e-08,9;CL:0002632,1.76e-08,9;CL:0002166,2.09e-08,3;CL:0002621,2.59e-08,3;CL:0002541,5.06e-08,3;CL:0002577,7.79e-08,3;CL:0000068,1.66e-07,3;CL:0000069,1.66e-07,3;CL:0000307,1.66e-07,3;CL:0000377,1.66e-07,3;CL:0002328,2.63e-07,3;CL:0002623,3.06e-07,3;CL:0002077,3.72e-07,34|ontology_enrichment_development_v019=CL:0000223;3.96e-12;58!CL:0000377;1.68e-07;3|ontology_enrichment_disease=DOID:1749!4.20e-16!14;DOID:305!4.74e-12!106;DOID:299!1.75e-08!25|ontology_enrichment_disease_v019=DOID:1749;2.03e-10;14|ontology_enrichment_disease_v019_2=DOID:1749,2.08e-10,14|ontology_enrichment_uberon=UBERON:0004119!1.36e-23!169;UBERON:0000925!1.36e-23!169;UBERON:0006595!1.36e-23!169;UBERON:0001007!3.23e-15!155;UBERON:0001555!3.23e-15!155;UBERON:0007026!3.23e-15!155;UBERON:0005631!5.44e-15!14;UBERON:0000158!5.44e-15!14;UBERON:0000161!1.22e-14!35;UBERON:0004921!2.48e-13!129;UBERON:0004185!2.48e-13!129;UBERON:0001004!3.68e-13!72;UBERON:0000077!5.08e-13!130;UBERON:0000166!1.98e-11!21;UBERON:0003124!2.78e-11!7;UBERON:0000464!2.32e-10!104;UBERON:0000466!1.20e-09!126;UBERON:0001008!2.50e-09!45;UBERON:0000165!6.24e-09!28;UBERON:0000930!6.24e-09!28;UBERON:0000344!7.16e-09!12;UBERON:0006554!1.05e-08!44;UBERON:0001044!2.27e-08!6;UBERON:0003293!2.27e-08!6;UBERON:0003294!2.27e-08!6;UBERON:0010047!2.27e-08!6;UBERON:0000167!2.27e-08!6;UBERON:0005156!3.52e-08!59;UBERON:0000990!3.52e-08!59;UBERON:0004923!5.84e-08!57;UBERON:0000365!6.42e-08!5;UBERON:0003408!7.73e-08!10;UBERON:0003100!9.05e-08!41;UBERON:0000062!1.18e-07!511;UBERON:0001041!1.36e-07!98;UBERON:0005911!1.48e-07!82;UBERON:0003102!1.67e-07!95;UBERON:0000478!3.04e-07!24;UBERON:0007196!4.94e-07!14;UBERON:0001558!4.94e-07!14;UBERON:0001987!5.08e-07!4;UBERON:0004340!5.08e-07!4;UBERON:0003975!6.82e-07!22;UBERON:0005795!7.36e-07!22;UBERON:0003064!8.01e-07!37|ontology_enrichment_uberon_v019=UBERON:0005631;2.99e-14;10!UBERON:0000158;2.99e-14;10!UBERON:0001041;3.28e-12;14!UBERON:0001044;1.11e-11;6!UBERON:0003293;1.11e-11;6!UBERON:0003294;1.11e-11;6!UBERON:0010047;1.11e-11;6!UBERON:0003408;1.11e-11;6!UBERON:0000167;1.11e-11;6!UBERON:0000478;1.59e-11;24!UBERON:0000486;3.56e-11;12!UBERON:0000365;5.26e-11;5!UBERON:0001987;1.04e-09;4!UBERON:0000161;2.25e-09;19!UBERON:0000166;2.25e-09;19!UBERON:0005910;4.29e-09;6!UBERON:0000305;2.33e-08;7!UBERON:0001949;2.58e-08;3!UBERON:0004921;3.37e-08;33!UBERON:0003124;5.06e-08;3!UBERON:0000920;5.06e-08;3!UBERON:0007196;7.21e-08;15!UBERON:0001558;7.21e-08;15!UBERON:0003126;2.39e-07;7!UBERON:0001005;2.39e-07;7!UBERON:0004815;2.66e-07;3!UBERON:0002031;2.66e-07;3!UBERON:0000165;4.68e-07;28|ontology_enrichment_uberon_v019_2=UBERON:0005631,4.81e-22,14;UBERON:0000158,4.81e-22,14;UBERON:0004119,1.80e-18,160;UBERON:0000925,1.80e-18,160;UBERON:0006595,1.80e-18,160;UBERON:0003124,4.91e-16,7;UBERON:0001004,1.79e-12,74;UBERON:0001044,1.05e-11,6;UBERON:0003293,1.05e-11,6;UBERON:0003294,1.05e-11,6;UBERON:0010047,1.05e-11,6;UBERON:0000167,1.05e-11,6;UBERON:0000478,1.60e-11,24;UBERON:0000365,4.94e-11,5;UBERON:0001987,1.06e-09,4;UBERON:0004340,1.06e-09,4;UBERON:0001007,1.80e-09,145;UBERON:0001555,1.80e-09,145;UBERON:0007026,1.80e-09,145;UBERON:0005910,4.07e-09,6;UBERON:0003408,5.09e-09,10;UBERON:0004923,1.22e-08,66;UBERON:0000161,1.92e-08,36;UBERON:0000305,2.31e-08,7;UBERON:0001949,2.59e-08,3;UBERON:0004921,3.42e-08,118;UBERON:0003102,4.25e-08,99;UBERON:0000920,5.06e-08,3;UBERON:0006554,7.21e-08,47;UBERON:0007196,7.44e-08,15;UBERON:0001558,7.44e-08,15;UBERON:0000166,8.21e-08,22;UBERON:0001008,1.26e-07,48;UBERON:0003100,2.39e-07,41;UBERON:0003126,2.51e-07,7;UBERON:0001005,2.51e-07,7;UBERON:0004815,2.63e-07,3;UBERON:0002031,2.63e-07,3;UBERON:0004871,3.00e-07,8;UBERON:0000033,4.81e-07,5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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3909 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6483 | |||
|TSSclassifier=W | |||
|UniProt=B0YJ33,Q16787,Q6VU69 | |||
|association_with_transcript=-73bp_to_NM_000227,NM_001127718,uc002kus.3,uc002kut.3_5end | |||
|coexpression_cluster_id=C363 | |||
|description=CAGE_peak_2_at_LAMA3_5end | |||
|id=chr18:21452899..21452910,+ | |||
|ontology_enrichment_celltype=CL:0002076!1.59e-32!43;CL:0000066!3.90e-29!254;CL:0000223!1.84e-24!59;CL:0002251!3.92e-17!21;CL:0002368!8.70e-13!13;CL:0002159!4.22e-11!13;CL:0000622!4.74e-08!5;CL:0002202!1.32e-07!9;CL:0002632!1.32e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;6.59e-24;42!CL:0002368;7.45e-16;13!CL:0002159;4.84e-15;14!CL:0000349;6.44e-13;19!CL:0000622;3.21e-11;5!CL:0002251;4.98e-11;20!CL:0000154;2.86e-09;6!CL:0000244;3.42e-09;4!CL:0000731;3.42e-09;4!CL:0002202;1.78e-08;9!CL:0002632;1.78e-08;9!CL:0002166;2.09e-08;3!CL:0002621;2.58e-08;3!CL:0002541;5.06e-08;3!CL:0002577;7.61e-08;3!CL:0000307;1.68e-07;3!CL:0002328;2.66e-07;3!CL:0002623;3.12e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.64e-31,42;CL:0000066,1.28e-28,253;CL:0000223,4.19e-22,58;CL:0002368,7.34e-16,13;CL:0002159,4.78e-15,14;CL:0000349,6.49e-13,19;CL:0000622,3.15e-11,5;CL:0002251,4.93e-11,20;CL:0000154,2.82e-09,6;CL:0000244,3.17e-09,4;CL:0000731,3.17e-09,4;CL:0002202,1.76e-08,9;CL:0002632,1.76e-08,9;CL:0002166,2.09e-08,3;CL:0002621,2.59e-08,3;CL:0002541,5.06e-08,3;CL:0002577,7.79e-08,3;CL:0000068,1.66e-07,3;CL:0000069,1.66e-07,3;CL:0000307,1.66e-07,3;CL:0000377,1.66e-07,3;CL:0002328,2.63e-07,3;CL:0002623,3.06e-07,3;CL:0002077,3.72e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000223;3.96e-12;58!CL:0000377;1.68e-07;3 | |||
|ontology_enrichment_disease=DOID:1749!4.20e-16!14;DOID:305!4.74e-12!106;DOID:299!1.75e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.03e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.08e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.36e-23!169;UBERON:0000925!1.36e-23!169;UBERON:0006595!1.36e-23!169;UBERON:0001007!3.23e-15!155;UBERON:0001555!3.23e-15!155;UBERON:0007026!3.23e-15!155;UBERON:0005631!5.44e-15!14;UBERON:0000158!5.44e-15!14;UBERON:0000161!1.22e-14!35;UBERON:0004921!2.48e-13!129;UBERON:0004185!2.48e-13!129;UBERON:0001004!3.68e-13!72;UBERON:0000077!5.08e-13!130;UBERON:0000166!1.98e-11!21;UBERON:0003124!2.78e-11!7;UBERON:0000464!2.32e-10!104;UBERON:0000466!1.20e-09!126;UBERON:0001008!2.50e-09!45;UBERON:0000165!6.24e-09!28;UBERON:0000930!6.24e-09!28;UBERON:0000344!7.16e-09!12;UBERON:0006554!1.05e-08!44;UBERON:0001044!2.27e-08!6;UBERON:0003293!2.27e-08!6;UBERON:0003294!2.27e-08!6;UBERON:0010047!2.27e-08!6;UBERON:0000167!2.27e-08!6;UBERON:0005156!3.52e-08!59;UBERON:0000990!3.52e-08!59;UBERON:0004923!5.84e-08!57;UBERON:0000365!6.42e-08!5;UBERON:0003408!7.73e-08!10;UBERON:0003100!9.05e-08!41;UBERON:0000062!1.18e-07!511;UBERON:0001041!1.36e-07!98;UBERON:0005911!1.48e-07!82;UBERON:0003102!1.67e-07!95;UBERON:0000478!3.04e-07!24;UBERON:0007196!4.94e-07!14;UBERON:0001558!4.94e-07!14;UBERON:0001987!5.08e-07!4;UBERON:0004340!5.08e-07!4;UBERON:0003975!6.82e-07!22;UBERON:0005795!7.36e-07!22;UBERON:0003064!8.01e-07!37 | |||
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|short_description=p2@LAMA3 | |||
}} |
Revision as of 17:01, 11 September 2013
Short description: | p2@LAMA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_LAMA3_5end |
Coexpression cluster: | C363_Mallassezderived_Gingival_Keratinocyte_Mammary_Prostate_Small_Urothelial |
Association with transcript: | -73bp_to_NM_000227, NM_001127718, uc002kus.3, uc002kut.3_5end |
EntrezGene: | LAMA3 |
HGNC: | 6483 |
UniProt: | B0YJ33Q16787Q6VU69 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.64e-31 | 42 |
epithelial cell | 1.28e-28 | 253 |
endodermal cell | 4.19e-22 | 58 |
respiratory epithelial cell | 7.34e-16 | 13 |
general ecto-epithelial cell | 4.78e-15 | 14 |
extraembryonic cell | 6.49e-13 | 19 |
acinar cell | 3.15e-11 | 5 |
epithelial cell of alimentary canal | 4.93e-11 | 20 |
protein secreting cell | 2.82e-09 | 6 |
transitional epithelial cell | 3.17e-09 | 4 |
urothelial cell | 3.17e-09 | 4 |
epithelial cell of tracheobronchial tree | 1.76e-08 | 9 |
epithelial cell of lower respiratory tract | 1.76e-08 | 9 |
epithelial cell of Malassez | 2.09e-08 | 3 |
gingival epithelial cell | 2.59e-08 | 3 |
chorionic membrane mesenchymal stem cell | 5.06e-08 | 3 |
placental epithelial cell | 7.79e-08 | 3 |
duct epithelial cell | 1.66e-07 | 3 |
branched duct epithelial cell | 1.66e-07 | 3 |
tracheal epithelial cell | 1.66e-07 | 3 |
tracheoblast | 1.66e-07 | 3 |
bronchial epithelial cell | 2.63e-07 | 3 |
acinar cell of salivary gland | 3.06e-07 | 3 |
ecto-epithelial cell | 3.72e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.08e-10 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.