FFCP PHASE1:Hg19::chr19:35739897..35739920,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=51599|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29572|TSSclassifier=S|UniProt=B4DKL4|association_with_transcript=0bp_to_ENST00000427250_5end|coexpression_cluster_id=C1817|description=CAGE_peak_1_at_LSR_5end|id=chr19:35739897..35739920,+|ontology_enrichment_celltype=CL:0000066!1.55e-29!254;CL:0000223!9.81e-15!59;CL:0002076!3.47e-13!43|ontology_enrichment_celltype_v019=CL:0002076;3.11e-11;42!CL:0002251;5.20e-07;20|ontology_enrichment_celltype_v019_2=CL:0000066,1.10e-29,253;CL:0000223,3.78e-16,58;CL:0002076,2.37e-14,42;CL:0002251,5.00e-07,20|ontology_enrichment_development_v019=CL:0000223;3.18e-09;58|ontology_enrichment_disease=DOID:305!5.46e-26!106;DOID:0050687!2.77e-16!143;DOID:299!7.06e-10!25;DOID:1749!3.90e-09!14|ontology_enrichment_disease_v019=DOID:299;1.54e-09;25!DOID:1749;1.90e-09;14!DOID:305;4.94e-09;106|ontology_enrichment_disease_v019_2=DOID:305,2.77e-26,106;DOID:0050687,1.24e-16,143;DOID:299,1.53e-09,25;DOID:1749,1.89e-09,14|ontology_enrichment_uberon=UBERON:0004119!3.88e-16!169;UBERON:0000925!3.88e-16!169;UBERON:0006595!3.88e-16!169;UBERON:0005177!2.02e-13!107;UBERON:0004921!1.00e-12!129;UBERON:0004185!1.00e-12!129;UBERON:0001007!1.32e-12!155;UBERON:0001555!1.32e-12!155;UBERON:0007026!1.32e-12!155;UBERON:0000077!8.72e-12!130;UBERON:0000466!1.65e-10!126;UBERON:0001041!6.82e-10!98;UBERON:0005911!1.86e-09!82;UBERON:0005172!2.60e-09!55;UBERON:0005173!2.60e-09!55;UBERON:0001008!4.48e-09!45;UBERON:0006554!5.98e-09!44;UBERON:0007023!6.30e-09!115;UBERON:0000464!1.25e-08!104;UBERON:0009569!4.69e-08!113;UBERON:0000062!6.22e-08!511;UBERON:0000064!1.14e-07!219;UBERON:0000489!1.48e-07!32;UBERON:0002113!3.16e-07!27;UBERON:0003918!3.16e-07!27;UBERON:0005095!3.16e-07!27;UBERON:0007687!3.16e-07!27;UBERON:0001004!3.36e-07!72;UBERON:0005153!8.77e-07!37|ontology_enrichment_uberon_v019=UBERON:0006554;5.65e-10;30!UBERON:0001008;5.65e-10;30!UBERON:0000489;1.17e-07;29!UBERON:0002113;2.43e-07;24!UBERON:0011143;2.43e-07;24|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.20e-16,160;UBERON:0000925,2.20e-16,160;UBERON:0006595,2.20e-16,160;UBERON:0005177,8.75e-16,101;UBERON:0004921,1.03e-13,118;UBERON:0001007,5.62e-13,145;UBERON:0001555,5.62e-13,145;UBERON:0007026,5.62e-13,145;UBERON:0001008,2.22e-11,48;UBERON:0006554,2.98e-11,47;UBERON:0001041,1.18e-10,87;UBERON:0005172,2.39e-10,54;UBERON:0005173,2.39e-10,54;UBERON:0005911,4.69e-10,82;UBERON:0007023,2.35e-09,114;UBERON:0009569,2.59e-09,112;UBERON:0000489,3.21e-08,31;UBERON:0002113,6.43e-08,26;UBERON:0003918,6.43e-08,26;UBERON:0011143,6.43e-08,26;UBERON:0005095,6.43e-08,26;UBERON:0007687,6.43e-08,26;UBERON:0002417,1.54e-07,60;UBERON:0000916,1.54e-07,60;UBERON:0001004,4.35e-07,74;UBERON:0011216,6.03e-07,223;UBERON:0005153,7.89e-07,37|phase1_expression=0,0,0,0,0,0.872338524100369,0,0,0,166.11614107502,757.812068418056,146.574160699346,180.944147064719,0,0,0,0,0.730310090387373,0,0,0,0,0,0.410623275218653,0.125542639594803,38.8944235257072,44.0059159451709,40.7721847204858,3.93364276848904,0.383829398097213,8.05043841243595,180.20655999787,217.169467439118,189.683807215562,12.9370224969104,11.5157078314811,3.52320527201817,1.10799081706375,4.01088894940283,6.72733699219141,1.79132379391939,2.59114932815184,0,1.01778767145695,1.13362783106643,0.485168122375632,1.16214518452842,1.23350366406548,1.54853185447552,0.863077176966451,2.56160706529101,0.47296445977717,1.37898272294647,2.5819387343353,0,0.188242339542605,2.18324920046277,0,0.612167784741805,1.60464513538047,0.639337125799041,0.989553900560148,0.199463657621632,0,0.290209238628584,5.10646702222026,1.24564449799115,1.00499466102697,3.12889751052121,0.868755378820466,13.9241885605675,2.94622108790052,1.26584954976354,0,0,0,0,0,0,0,0,0,19.3595868907455,16.3841583378639,9.7846017924991,9.38806489646316,9.6095036888643,16.66782075868,21.8144808019005,18.1270213361719,33.014352208348,51.0896354752717,39.3741424968986,7.93027971474155,6.1655941927969,0.790152254325231,25.965689655026,43.2311839024081,60.2412392068562,26.4154662717271,65.1844533267181,74.8047533060879,75.9824240790854,14.8175907657281,35.3527088969805,39.4330332358846,21.3935052374362,35.9936608429147,35.7663205789665,2.13769275984779,1.93445012450094,1.15921234294021,16.7563816373128,18.1927763101005,30.3153019034433,1.69964014046349,14.562378756873,20.2740192834752,16.4462799812677,17.2025323735012,22.7879208849746,22.810849066761,14.0034860742329,12.6706745042874,16.240994451805,15.6272986349051,27.9183518953156,48.3856183739358,60.9763646386397,60.1021276113616,0,0,0.639312809217652,0,0,0,0,3.40644409211845,3.78139268656271,2.4390233720882,5.18225235589444,42.4372204612589,225.863078741376,181.68437696437,1.9472843619281,1.56716763569341,3.32394901297163,0.953962497221368,0,1.11437250398869,0,0,0,0,0,0,0,0,0,0,0.805658634218294,0,0.24406205754817,0,0,0,0,0,0,0,0,1.31780417436063,0,168.768398179161,0,0,0,0,2.83734705758686,3.36406560085384,0,0.24666754841716,0,0,0,0.151357427644931,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=51599 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29572 | |||
|TSSclassifier=S | |||
|UniProt=B4DKL4 | |||
|association_with_transcript=0bp_to_ENST00000427250_5end | |||
|coexpression_cluster_id=C1817 | |||
|description=CAGE_peak_1_at_LSR_5end | |||
|id=chr19:35739897..35739920,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.55e-29!254;CL:0000223!9.81e-15!59;CL:0002076!3.47e-13!43 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.11e-11;42!CL:0002251;5.20e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.10e-29,253;CL:0000223,3.78e-16,58;CL:0002076,2.37e-14,42;CL:0002251,5.00e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;3.18e-09;58 | |||
|ontology_enrichment_disease=DOID:305!5.46e-26!106;DOID:0050687!2.77e-16!143;DOID:299!7.06e-10!25;DOID:1749!3.90e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:299;1.54e-09;25!DOID:1749;1.90e-09;14!DOID:305;4.94e-09;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.77e-26,106;DOID:0050687,1.24e-16,143;DOID:299,1.53e-09,25;DOID:1749,1.89e-09,14 | |||
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|ontology_enrichment_uberon_v019=UBERON:0006554;5.65e-10;30!UBERON:0001008;5.65e-10;30!UBERON:0000489;1.17e-07;29!UBERON:0002113;2.43e-07;24!UBERON:0011143;2.43e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.20e-16,160;UBERON:0000925,2.20e-16,160;UBERON:0006595,2.20e-16,160;UBERON:0005177,8.75e-16,101;UBERON:0004921,1.03e-13,118;UBERON:0001007,5.62e-13,145;UBERON:0001555,5.62e-13,145;UBERON:0007026,5.62e-13,145;UBERON:0001008,2.22e-11,48;UBERON:0006554,2.98e-11,47;UBERON:0001041,1.18e-10,87;UBERON:0005172,2.39e-10,54;UBERON:0005173,2.39e-10,54;UBERON:0005911,4.69e-10,82;UBERON:0007023,2.35e-09,114;UBERON:0009569,2.59e-09,112;UBERON:0000489,3.21e-08,31;UBERON:0002113,6.43e-08,26;UBERON:0003918,6.43e-08,26;UBERON:0011143,6.43e-08,26;UBERON:0005095,6.43e-08,26;UBERON:0007687,6.43e-08,26;UBERON:0002417,1.54e-07,60;UBERON:0000916,1.54e-07,60;UBERON:0001004,4.35e-07,74;UBERON:0011216,6.03e-07,223;UBERON:0005153,7.89e-07,37 | |||
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| |||
|short_description=p1@LSR | |||
}} |
Revision as of 20:07, 11 September 2013
Short description: | p1@LSR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LSR_5end |
Coexpression cluster: | C1817_Alveolar_smallcell_acantholytic_Hepatocyte_squamous_liver_mesothelioma |
Association with transcript: | 0bp_to_ENST00000427250_5end |
EntrezGene: | LSR |
HGNC: | 29572 |
UniProt: | B4DKL4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.10e-29 | 253 |
endodermal cell | 3.78e-16 | 58 |
endo-epithelial cell | 2.37e-14 | 42 |
epithelial cell of alimentary canal | 5.00e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 2.20e-16 | 160 |
endoderm | 2.20e-16 | 160 |
presumptive endoderm | 2.20e-16 | 160 |
trunk region element | 8.75e-16 | 101 |
subdivision of digestive tract | 1.03e-13 | 118 |
digestive system | 5.62e-13 | 145 |
digestive tract | 5.62e-13 | 145 |
primitive gut | 5.62e-13 | 145 |
renal system | 2.22e-11 | 48 |
urinary system structure | 2.98e-11 | 47 |
foregut | 1.18e-10 | 87 |
abdomen element | 2.39e-10 | 54 |
abdominal segment element | 2.39e-10 | 54 |
endo-epithelium | 4.69e-10 | 82 |
adult organism | 2.35e-09 | 114 |
subdivision of trunk | 2.59e-09 | 112 |
cavitated compound organ | 3.21e-08 | 31 |
kidney | 6.43e-08 | 26 |
kidney mesenchyme | 6.43e-08 | 26 |
upper urinary tract | 6.43e-08 | 26 |
kidney rudiment | 6.43e-08 | 26 |
kidney field | 6.43e-08 | 26 |
abdominal segment of trunk | 1.54e-07 | 60 |
abdomen | 1.54e-07 | 60 |
respiratory system | 4.35e-07 | 74 |
organ system subdivision | 6.03e-07 | 223 |
epithelial bud | 7.89e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.77e-26 | 106 |
cell type cancer | 1.24e-16 | 143 |
adenocarcinoma | 1.53e-09 | 25 |
squamous cell carcinoma | 1.89e-09 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.