FFCP PHASE1:Hg19::chr19:6693051..6693096,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=718|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1318|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000475508,uc002mfl.2_5end|coexpression_cluster_id=C5|description=CAGE_peak_6_at_C3_5end|id=chr19:6693051..6693096,-|ontology_enrichment_celltype=CL:0000181!1.68e-08!12;CL:0000417!1.68e-08!12;CL:0000668!1.68e-08!12;CL:0000414!1.68e-08!12;CL:0000412!1.68e-08!12;CL:0000182!1.68e-08!12|ontology_enrichment_celltype_v019=CL:0000182;5.03e-17;12!CL:0000746;1.00e-06;3|ontology_enrichment_celltype_v019_2=CL:0000182,2.79e-17,12;CL:0000746,9.47e-07,3;CL:0000513,9.47e-07,3|ontology_enrichment_development_v019=UBERON:0004161;3.39e-18;11!UBERON:0009497;3.01e-15;13!UBERON:0003104;3.25e-14;31!CL:0000513;1.00e-06;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.07e-19!115;UBERON:0004111!6.68e-13!241;UBERON:0000477!3.34e-11!286;UBERON:0000025!1.19e-10!194;UBERON:0007100!6.13e-10!27;UBERON:0000948!1.70e-09!24;UBERON:0005498!1.70e-09!24;UBERON:0004140!1.70e-09!24;UBERON:0009881!1.70e-09!24;UBERON:0004141!1.70e-09!24;UBERON:0003084!1.70e-09!24;UBERON:0007005!1.70e-09!24;UBERON:0004139!1.70e-09!24;UBERON:0004291!1.70e-09!24;UBERON:0002365!3.46e-09!31;UBERON:0002330!3.46e-09!31;UBERON:0002107!5.72e-09!19;UBERON:0006925!5.72e-09!19;UBERON:0008836!5.72e-09!19;UBERON:0009854!7.05e-08!23;UBERON:0000481!8.59e-08!347;UBERON:0009497!1.15e-07!25;UBERON:0000015!1.15e-07!25;UBERON:0002423!1.15e-07!25;UBERON:0006235!1.15e-07!25;UBERON:0004161!1.15e-07!25;UBERON:0008835!3.97e-07!22;UBERON:0003894!3.97e-07!22;UBERON:0000922!5.30e-07!612;UBERON:0003103!5.87e-07!69;UBERON:0000923!5.92e-07!604;UBERON:0005291!5.92e-07!604;UBERON:0006598!5.92e-07!604;UBERON:0002532!5.92e-07!604;UBERON:0003914!6.53e-07!118;UBERON:0002050!7.15e-07!605;UBERON:0005423!7.15e-07!605|ontology_enrichment_uberon_v019=UBERON:0002107;2.84e-17;19!UBERON:0006925;2.84e-17;19!UBERON:0002423;1.27e-15;25!UBERON:0004151;2.27e-13;3!UBERON:0002365;1.02e-11;31!UBERON:0002330;1.02e-11;31!UBERON:0002368;4.31e-10;33!UBERON:0002081;1.24e-09;2!UBERON:0002133;3.51e-09;2!UBERON:0000948;1.67e-08;22!UBERON:0000949;9.10e-08;43!UBERON:0005172;1.52e-07;52!UBERON:0005173;1.52e-07;52!UBERON:0007100;2.27e-07;25|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.70e-17,19;UBERON:0006925,1.70e-17,19;UBERON:0008836,1.70e-17,19;UBERON:0009854,2.63e-17,23;UBERON:0009497,8.38e-16,25;UBERON:0000015,8.38e-16,25;UBERON:0002423,8.38e-16,25;UBERON:0006235,8.38e-16,25;UBERON:0004161,8.38e-16,25;UBERON:0009856,4.46e-15,26;UBERON:0008835,7.08e-15,22;UBERON:0003894,7.08e-15,22;UBERON:0004151,1.02e-13,3;UBERON:0007499,6.92e-13,25;UBERON:0002417,1.21e-12,60;UBERON:0000916,1.21e-12,60;UBERON:0005172,1.55e-12,54;UBERON:0005173,1.55e-12,54;UBERON:0002365,2.74e-12,31;UBERON:0002330,2.74e-12,31;UBERON:0002368,1.13e-10,35;UBERON:0003914,4.78e-10,117;UBERON:0002081,9.81e-10,2;UBERON:0010227,9.81e-10,2;UBERON:0003104,1.20e-09,160;UBERON:0009142,1.20e-09,160;UBERON:0000949,1.34e-09,45;UBERON:0002133,2.63e-09,2;UBERON:0005177,2.30e-08,101;UBERON:0005256,2.58e-08,122;UBERON:0000948,8.88e-08,24;UBERON:0005498,8.88e-08,24;UBERON:0004140,8.88e-08,24;UBERON:0009881,8.88e-08,24;UBERON:0004141,8.88e-08,24;UBERON:0003084,8.88e-08,24;UBERON:0007005,8.88e-08,24;UBERON:0004139,8.88e-08,24;UBERON:0004291,8.88e-08,24;UBERON:0009569,3.65e-07,112;UBERON:0007100,8.28e-07,27|phase1_expression=0,0.428201047781966,0,1.0007329835313,0,0,0,0,0.783556884599516,0,0,0,0,0.123766352960047,0,0,0,0.730310090387373,1.46379839637152,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0,0,0.199463657621632,0.426224750532694,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0.112328631146495,0,0,0.285012743741249,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,1.34140171940727,0.511450247374121,0,0,0.869079113764942,0.795285947051099,0.486634870302636,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.397227542439656,0,0,0.560677600142307,1.06748995729705,0,0,0.134710672069688,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,1.18800285728205,0.247266929278557,0,0,0,0,0,0,0,0.300476117813194,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0.484938170456436,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0.464367928031979,0,0,0.168584690078102,0,0.441175890929576,0.217879444092406,0.237270619111097,0,0,0,0.738155454624648,0,0,0,97.6013768128098,44.2272247504932,15.3605375737165,0,0.122988438543114,0,0.109750285408626,0,0.100528972411631,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0.246217006087397,0.234004265139238,0.148631162288728,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,1.80863626235752,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=718 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1318 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000475508,uc002mfl.2_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_6_at_C3_5end | |||
|id=chr19:6693051..6693096,- | |||
|ontology_enrichment_celltype=CL:0000181!1.68e-08!12;CL:0000417!1.68e-08!12;CL:0000668!1.68e-08!12;CL:0000414!1.68e-08!12;CL:0000412!1.68e-08!12;CL:0000182!1.68e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;5.03e-17;12!CL:0000746;1.00e-06;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.79e-17,12;CL:0000746,9.47e-07,3;CL:0000513,9.47e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.39e-18;11!UBERON:0009497;3.01e-15;13!UBERON:0003104;3.25e-14;31!CL:0000513;1.00e-06;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.07e-19!115;UBERON:0004111!6.68e-13!241;UBERON:0000477!3.34e-11!286;UBERON:0000025!1.19e-10!194;UBERON:0007100!6.13e-10!27;UBERON:0000948!1.70e-09!24;UBERON:0005498!1.70e-09!24;UBERON:0004140!1.70e-09!24;UBERON:0009881!1.70e-09!24;UBERON:0004141!1.70e-09!24;UBERON:0003084!1.70e-09!24;UBERON:0007005!1.70e-09!24;UBERON:0004139!1.70e-09!24;UBERON:0004291!1.70e-09!24;UBERON:0002365!3.46e-09!31;UBERON:0002330!3.46e-09!31;UBERON:0002107!5.72e-09!19;UBERON:0006925!5.72e-09!19;UBERON:0008836!5.72e-09!19;UBERON:0009854!7.05e-08!23;UBERON:0000481!8.59e-08!347;UBERON:0009497!1.15e-07!25;UBERON:0000015!1.15e-07!25;UBERON:0002423!1.15e-07!25;UBERON:0006235!1.15e-07!25;UBERON:0004161!1.15e-07!25;UBERON:0008835!3.97e-07!22;UBERON:0003894!3.97e-07!22;UBERON:0000922!5.30e-07!612;UBERON:0003103!5.87e-07!69;UBERON:0000923!5.92e-07!604;UBERON:0005291!5.92e-07!604;UBERON:0006598!5.92e-07!604;UBERON:0002532!5.92e-07!604;UBERON:0003914!6.53e-07!118;UBERON:0002050!7.15e-07!605;UBERON:0005423!7.15e-07!605 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.84e-17;19!UBERON:0006925;2.84e-17;19!UBERON:0002423;1.27e-15;25!UBERON:0004151;2.27e-13;3!UBERON:0002365;1.02e-11;31!UBERON:0002330;1.02e-11;31!UBERON:0002368;4.31e-10;33!UBERON:0002081;1.24e-09;2!UBERON:0002133;3.51e-09;2!UBERON:0000948;1.67e-08;22!UBERON:0000949;9.10e-08;43!UBERON:0005172;1.52e-07;52!UBERON:0005173;1.52e-07;52!UBERON:0007100;2.27e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.70e-17,19;UBERON:0006925,1.70e-17,19;UBERON:0008836,1.70e-17,19;UBERON:0009854,2.63e-17,23;UBERON:0009497,8.38e-16,25;UBERON:0000015,8.38e-16,25;UBERON:0002423,8.38e-16,25;UBERON:0006235,8.38e-16,25;UBERON:0004161,8.38e-16,25;UBERON:0009856,4.46e-15,26;UBERON:0008835,7.08e-15,22;UBERON:0003894,7.08e-15,22;UBERON:0004151,1.02e-13,3;UBERON:0007499,6.92e-13,25;UBERON:0002417,1.21e-12,60;UBERON:0000916,1.21e-12,60;UBERON:0005172,1.55e-12,54;UBERON:0005173,1.55e-12,54;UBERON:0002365,2.74e-12,31;UBERON:0002330,2.74e-12,31;UBERON:0002368,1.13e-10,35;UBERON:0003914,4.78e-10,117;UBERON:0002081,9.81e-10,2;UBERON:0010227,9.81e-10,2;UBERON:0003104,1.20e-09,160;UBERON:0009142,1.20e-09,160;UBERON:0000949,1.34e-09,45;UBERON:0002133,2.63e-09,2;UBERON:0005177,2.30e-08,101;UBERON:0005256,2.58e-08,122;UBERON:0000948,8.88e-08,24;UBERON:0005498,8.88e-08,24;UBERON:0004140,8.88e-08,24;UBERON:0009881,8.88e-08,24;UBERON:0004141,8.88e-08,24;UBERON:0003084,8.88e-08,24;UBERON:0007005,8.88e-08,24;UBERON:0004139,8.88e-08,24;UBERON:0004291,8.88e-08,24;UBERON:0009569,3.65e-07,112;UBERON:0007100,8.28e-07,27 | |||
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| |||
|short_description=p6@C3 | |||
}} |
Revision as of 22:49, 11 September 2013
Short description: | p6@C3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_C3_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000475508, uc002mfl.2_5end |
EntrezGene: | C3 |
HGNC: | 1318 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.79e-17 | 12 |
cardiac muscle cell | 9.47e-07 | 3 |
cardiac muscle myoblast | 9.47e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.