FFCP PHASE1:Hg19::chr1:116184566..116184633,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=81839|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=15512|TSSclassifier=S|UniProt=Q8TAA9|association_with_transcript=0bp_to_ENST00000355485,ENST00000369510,NM_001172411,NM_138959,uc001efv.1,uc009wgy.1_5end|description=CAGE_peak_1_at_VANGL1_5end|id=chr1:116184566..116184633,+|ontology_enrichment_celltype=CL:0000066!1.53e-34!254;CL:0000220!3.49e-20!246;CL:0002321!1.45e-19!248;CL:0000076!1.47e-11!62;CL:0000548!9.98e-10!679;CL:0000004!9.98e-10!679;CL:0000255!9.98e-10!679;CL:0000012!1.57e-09!682;CL:0002076!2.62e-09!43;CL:0000223!6.47e-09!59;CL:0000213!2.87e-08!57;CL:0000215!2.87e-08!57;CL:0000222!7.82e-08!119;CL:0000063!1.01e-07!578;CL:0002078!3.47e-07!44;CL:0002368!7.92e-07!13|ontology_enrichment_celltype_v019=CL:0002076;4.07e-07;42!CL:0002368;8.73e-07;13|ontology_enrichment_celltype_v019_2=CL:0000066,1.11e-34,253;CL:0002321,8.00e-20,250;CL:0000076,2.04e-11,63;CL:0002076,1.90e-09,42;CL:0000223,5.26e-09,58;CL:0000213,1.17e-08,58;CL:0000215,1.17e-08,58;CL:0000222,5.11e-08,121;CL:0002078,1.39e-07,45;CL:0002368,7.89e-07,13|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:162!1.18e-08!235;DOID:305!1.39e-08!106;DOID:0050687!2.59e-08!143;DOID:14566!2.74e-08!239|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:162,9.75e-09,235;DOID:305,1.54e-08,106;DOID:14566,2.28e-08,239;DOID:0050687,2.82e-08,143|ontology_enrichment_uberon=UBERON:0004119!2.56e-10!169;UBERON:0000925!2.56e-10!169;UBERON:0006595!2.56e-10!169;UBERON:0003104!3.05e-09!238;UBERON:0009142!3.05e-09!238;UBERON:0002100!7.06e-09!216;UBERON:0001007!1.52e-08!155;UBERON:0001555!1.52e-08!155;UBERON:0007026!1.52e-08!155;UBERON:0000466!1.75e-08!126;UBERON:0000464!1.02e-07!104;UBERON:0003102!1.39e-07!95;UBERON:0001004!4.03e-07!72;UBERON:0009569!4.28e-07!113|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0002100,7.03e-09,199;UBERON:0004119,7.07e-09,160;UBERON:0000925,7.07e-09,160;UBERON:0006595,7.07e-09,160;UBERON:0003102,1.93e-08,99;UBERON:0005177,1.95e-07,101;UBERON:0001007,2.67e-07,145;UBERON:0001555,2.67e-07,145;UBERON:0007026,2.67e-07,145;UBERON:0009569,4.09e-07,112;UBERON:0001004,7.63e-07,74|phase1_expression=11.2640595147745,11.1332272423311,11.8401699440616,16.0117277365009,16.0905993993824,19.1914475302081,10.1319951267324,15.7929968356708,19.5889221149879,18.1843113011117,17.4450291993107,28.1789370047922,24.0027950187893,6.43585035392242,7.62213964174206,7.39557661096953,9.04041792035965,3.65155045193687,5.85519358548608,16.8675849565199,29.7841009216609,12.2247341376454,13.1668554080286,14.0980657825071,18.8313959392204,2.67446920117829,3.9408282935974,4.171671409625,3.14691421479123,4.60595277716655,2.63187409637329,38.6156914281149,37.6507398472813,18.8574545185062,0,0,8.51441274071057,0.553995408531877,1.00272223735071,1.73608696572681,3.58264758783879,5.50619232232265,3.60605794687861,1.59938062657521,1.13362783106643,0.485168122375632,0.232429036905685,0.411167888021826,0,0.575384784644301,0,0,0.344745680736619,0.645484683583826,1.35426486594342,0.376484679085209,0,0.449446968890169,0.306083892370903,0.320929027076094,1.27867425159808,0.329851300186716,0.598390972864896,0,0.580418477257168,0,0.622822248995575,0.502497330513487,0,1.3031330682307,1.81619850790011,0.368277635987565,0.632924774881769,1.69004229049553,0.850417199860174,0.838634582033504,0.898629049171961,1.65194582125657,0.803627933485401,1.71007646244749,0.99458338599545,0.547992461293902,1.75996244461323,0.546138611262131,1.77901850772711,0,0.800791974072025,0.574752439954483,3.30522436392431,0,0,1.17447437874188,0,3.96513985737078,3.92355994087075,17.6467336799302,1.7703879310245,2.35806457649499,4.72883447698871,10.0311897234407,0,1.89379122293893,0,9.24706792146941,3.53527088969805,5.98141515375777,3.79125409271022,19.726063237754,18.7285460486225,19.2392348386301,12.712100818149,11.012517257932,1.63115219478266,3.74557159325598,1.04535523804977,13.9370491518006,2.29932296161153,5.15441168223945,4.55435445635105,4.77848121486145,1.95325036156926,0,1.6563263098555,2.68771883424279,2.49861453104692,3.78843603270427,4.10563998460523,1.41124720257313,3.4767225451856,3.33096128930438,4.87613732627923,12.0726154746655,13.5534315554142,33.6138411717647,16.0428131403485,9.99440980829684,22.2680065174308,10.705967146658,15.5037100149071,13.747222642679,13.0873830682758,8.77559805834675,18.9433549912122,28.9211865371855,7.46459005405772,8.35822739036483,7.84451967061304,2.14641561874808,3.43196946468077,1.85728750664782,25.2428257355715,17.2046919021225,26.0355376205696,26.0041653285044,13.423981958717,14.8563742647636,15.0476375906504,12.9208379584664,14.9421830328418,18.0749130892922,15.3075140501476,16.7259863258073,20.9893369491426,19.1184801779852,17.8231228533987,19.1101418527931,23.800113498374,29.3915964061471,21.4643292452237,25.6301728083395,14.839341258363,0,3.87780264148325,25.293455024267,17.3940183093361,9.49728837484348,9.26864265692532,27.82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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=81839 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15512 | |||
|TSSclassifier=S | |||
|UniProt=Q8TAA9 | |||
|association_with_transcript=0bp_to_ENST00000355485,ENST00000369510,NM_001172411,NM_138959,uc001efv.1,uc009wgy.1_5end | |||
|description=CAGE_peak_1_at_VANGL1_5end | |||
|id=chr1:116184566..116184633,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.53e-34!254;CL:0000220!3.49e-20!246;CL:0002321!1.45e-19!248;CL:0000076!1.47e-11!62;CL:0000548!9.98e-10!679;CL:0000004!9.98e-10!679;CL:0000255!9.98e-10!679;CL:0000012!1.57e-09!682;CL:0002076!2.62e-09!43;CL:0000223!6.47e-09!59;CL:0000213!2.87e-08!57;CL:0000215!2.87e-08!57;CL:0000222!7.82e-08!119;CL:0000063!1.01e-07!578;CL:0002078!3.47e-07!44;CL:0002368!7.92e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.07e-07;42!CL:0002368;8.73e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.11e-34,253;CL:0002321,8.00e-20,250;CL:0000076,2.04e-11,63;CL:0002076,1.90e-09,42;CL:0000223,5.26e-09,58;CL:0000213,1.17e-08,58;CL:0000215,1.17e-08,58;CL:0000222,5.11e-08,121;CL:0002078,1.39e-07,45;CL:0002368,7.89e-07,13 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.18e-08!235;DOID:305!1.39e-08!106;DOID:0050687!2.59e-08!143;DOID:14566!2.74e-08!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,9.75e-09,235;DOID:305,1.54e-08,106;DOID:14566,2.28e-08,239;DOID:0050687,2.82e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.56e-10!169;UBERON:0000925!2.56e-10!169;UBERON:0006595!2.56e-10!169;UBERON:0003104!3.05e-09!238;UBERON:0009142!3.05e-09!238;UBERON:0002100!7.06e-09!216;UBERON:0001007!1.52e-08!155;UBERON:0001555!1.52e-08!155;UBERON:0007026!1.52e-08!155;UBERON:0000466!1.75e-08!126;UBERON:0000464!1.02e-07!104;UBERON:0003102!1.39e-07!95;UBERON:0001004!4.03e-07!72;UBERON:0009569!4.28e-07!113 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,7.03e-09,199;UBERON:0004119,7.07e-09,160;UBERON:0000925,7.07e-09,160;UBERON:0006595,7.07e-09,160;UBERON:0003102,1.93e-08,99;UBERON:0005177,1.95e-07,101;UBERON:0001007,2.67e-07,145;UBERON:0001555,2.67e-07,145;UBERON:0007026,2.67e-07,145;UBERON:0009569,4.09e-07,112;UBERON:0001004,7.63e-07,74 | |||
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| |||
|short_description=p1@VANGL1 | |||
}} |
Revision as of 23:41, 11 September 2013
Short description: | p1@VANGL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_VANGL1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000355485, ENST00000369510, NM_001172411, NM_138959, uc001efv.1, uc009wgy.1_5end |
EntrezGene: | VANGL1 |
HGNC: | 15512 |
UniProt: | Q8TAA9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.11e-34 | 253 |
embryonic cell | 8.00e-20 | 250 |
squamous epithelial cell | 2.04e-11 | 63 |
endo-epithelial cell | 1.90e-09 | 42 |
endodermal cell | 5.26e-09 | 58 |
lining cell | 1.17e-08 | 58 |
barrier cell | 1.17e-08 | 58 |
mesodermal cell | 5.11e-08 | 121 |
meso-epithelial cell | 1.39e-07 | 45 |
respiratory epithelial cell | 7.89e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
trunk | 7.03e-09 | 199 |
endoderm-derived structure | 7.07e-09 | 160 |
endoderm | 7.07e-09 | 160 |
presumptive endoderm | 7.07e-09 | 160 |
surface structure | 1.93e-08 | 99 |
trunk region element | 1.95e-07 | 101 |
digestive system | 2.67e-07 | 145 |
digestive tract | 2.67e-07 | 145 |
primitive gut | 2.67e-07 | 145 |
subdivision of trunk | 4.09e-07 | 112 |
respiratory system | 7.63e-07 | 74 |
Ontology term | p-value | n |
---|---|---|
cancer | 9.75e-09 | 235 |
carcinoma | 1.54e-08 | 106 |
disease of cellular proliferation | 2.28e-08 | 239 |
cell type cancer | 2.82e-08 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.