FFCP PHASE1:Hg19::chr1:78392094..78392114,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=91624|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=29557|TSSclassifier=N|UniProt=|association_with_transcript=-139bp_to_ENST00000464998_5end|coexpression_cluster_id=C933|description=CAGE_peak_5_at_NEXN_5end|id=chr1:78392094..78392114,+|ontology_enrichment_celltype=CL:0000055!1.34e-12!180;CL:0000057!5.57e-11!75|ontology_enrichment_celltype_v019=CL:0002620;1.64e-07;23|ontology_enrichment_celltype_v019_2=CL:0000057,2.30e-09,76;CL:0002620,2.34e-07,23|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:2394;1.04e-07;14|ontology_enrichment_disease_v019_2=DOID:2394,1.17e-07,14|ontology_enrichment_uberon=UBERON:0003102!5.56e-09!95;UBERON:0000475!5.05e-08!365|ontology_enrichment_uberon_v019=UBERON:0002385;9.17e-11;31!UBERON:0001015;9.17e-11;31!UBERON:0000383;9.17e-11;31!UBERON:0004457;6.69e-10;9!UBERON:0000042;6.69e-10;9!UBERON:0003688;1.08e-07;6!UBERON:0002358;1.08e-07;6!UBERON:0003684;1.08e-07;6!UBERON:0001178;1.08e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0002385,8.00e-08,64;UBERON:0001015,8.00e-08,64;UBERON:0000383,8.00e-08,64;UBERON:0004797,9.02e-08,7;UBERON:0003688,1.04e-07,6;UBERON:0002358,1.04e-07,6;UBERON:0003684,1.04e-07,6;UBERON:0001178,1.04e-07,6;UBERON:0001134,1.92e-07,62;UBERON:0002036,1.92e-07,62;UBERON:0003082,1.92e-07,62;UBERON:0007524,3.78e-07,73;UBERON:0003102,6.47e-07,99;UBERON:0002329,6.57e-07,71;UBERON:0003059,6.57e-07,71;UBERON:0007282,6.57e-07,71;UBERON:0004290,6.57e-07,71;UBERON:0009618,6.57e-07,71;UBERON:0004457,6.75e-07,12;UBERON:0000042,6.75e-07,12;UBERON:0002199,8.13e-07,46;UBERON:0002416,8.13e-07,46|phase1_expression=2.72517568905835,11.5614282901131,3.38290569830331,5.00366491765652,6.70441641640932,3.48935409640147,0,0.631719873426831,1.30592814099919,0.245733936501509,0,0,0,0.618831764800233,0,2.6893005858071,2.41077811209591,3.65155045193687,4.87932798790507,0,0.204000691244253,0,0.572471974262113,1.91624195102038,1.88313959392204,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.9426179682566,0.670700859703636,0.511450247374121,1.80719576192283,0,2.89693037921647,0,0,0.0945348171640679,1.77383517970051,1.14185221401064,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0.825354125820202,0,0,0,0,0,0,0,0,0,0,0,0.337834441449967,0,0,0,0,0,0,2.98183171017191,1.13967460498122,1.58891016975863,2.58152958673932,2.12801029319014,0,0,0.74000264525148,0.311211035399766,0.67355336034844,0.653847612453835,0,1.15235184896,0,0,0,2.69007624993242,0.23486899728753,0.323745888736263,0,0.816616685019573,4.42203542322365,0.516628905878827,0,5.68713937340681,0,0,0.673344455816265,0.625592599359821,0.831192346452549,0,1.5324389789951,0.901428353439581,0.567160915800105,6.99619579186562,2.56268866582281,2.54318281391474,2.10063767259082,2.16410311400722,5.66809188100384,1.30281799432113,3.20675031258406,0.584622030967192,4.29137416214995,0.552299391853796,1.2931684545505,2.84007674013291,1.61203357164224,1.3564847384839,0,0,0,0,0.132529768321485,0,0,0.504641701751257,0.72995471815166,0,4.5026865673502,0,8.35862270457562,6.49691533502627,0.473227200159376,0.505754070234305,0.241011029883482,0.330881918197182,0,0,0.269662616320329,0.588664395376038,0,0,0,0,0,0,0,0,0,0,1.54411029268673,0.219500570817251,0,0.502644862058154,0.0925884451585296,0.651616610620649,0,2.88662684050547,0,0.939269553886573,0,0,0.190254152234598,0,0,0,0,0,0,2.35174979478403,0.141775097242386,0.53735113621709,0.290633938513962,0,0,0,0,0,0,0.063497894292169,0,0,1.71072446022705,0.102827492703324,0,0,0.112131084345361,0,0.51336800074665,0.646358578788889,0,1.690605505112,2.12750493267896,6.24044621468197,0,0,0,7.14889968290738,0,0.823240336780769,0.977208552881205,1.42156779497018,1.58390374586686,1.20575750823834,0.871533458600294,5.69846049737725,0,0,0,1.4377491329495,3.44585807502342,0,0.868687840005475,2.67119219315498,0.895304816199478,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.24538298343828,2.50085260529839,0.813795071099207,7.90289273817067,7.85087550707512,5.04647728108591,2.34282829985426,0,0,1.03473071292505,1.99267679560631,0.184369168541703,1.73767228936166,0,0.686286847621712,0,0.215714200818617,0,0,0,0.30239029332968,1.24053903909388,4.60385919864187,4.2099014164961,1.53766979106841,3.58195074346692,8.68611174175481,0,2.7757744884478,1.06537035187876,0.98552587216571,1.03850885836724,0.813472649219715,0.120859449591622,0.802025881213139,0.276242966807689,0.68888668898764,4.37018803216121,3.54035920390445,0,0.847168708148562,0,0,0.633309773357254,0,0,1.72732732881711,0,0.270946437543853,0,0,0,0,0.219259876645935,0,0.256450125116389,0,0.650756789328606,0.515205058238611,1.19040304263846,0.82509499920588,0,0.650060246036521,0,0.290012154876366,0.770243085573222,1.07452572308291,1.10269257987624,1.39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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=91624 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29557 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-139bp_to_ENST00000464998_5end | |||
|coexpression_cluster_id=C933 | |||
|description=CAGE_peak_5_at_NEXN_5end | |||
|id=chr1:78392094..78392114,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.34e-12!180;CL:0000057!5.57e-11!75 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.64e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.30e-09,76;CL:0002620,2.34e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;1.04e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.17e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0003102!5.56e-09!95;UBERON:0000475!5.05e-08!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;9.17e-11;31!UBERON:0001015;9.17e-11;31!UBERON:0000383;9.17e-11;31!UBERON:0004457;6.69e-10;9!UBERON:0000042;6.69e-10;9!UBERON:0003688;1.08e-07;6!UBERON:0002358;1.08e-07;6!UBERON:0003684;1.08e-07;6!UBERON:0001178;1.08e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002385,8.00e-08,64;UBERON:0001015,8.00e-08,64;UBERON:0000383,8.00e-08,64;UBERON:0004797,9.02e-08,7;UBERON:0003688,1.04e-07,6;UBERON:0002358,1.04e-07,6;UBERON:0003684,1.04e-07,6;UBERON:0001178,1.04e-07,6;UBERON:0001134,1.92e-07,62;UBERON:0002036,1.92e-07,62;UBERON:0003082,1.92e-07,62;UBERON:0007524,3.78e-07,73;UBERON:0003102,6.47e-07,99;UBERON:0002329,6.57e-07,71;UBERON:0003059,6.57e-07,71;UBERON:0007282,6.57e-07,71;UBERON:0004290,6.57e-07,71;UBERON:0009618,6.57e-07,71;UBERON:0004457,6.75e-07,12;UBERON:0000042,6.75e-07,12;UBERON:0002199,8.13e-07,46;UBERON:0002416,8.13e-07,46 | |||
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| |||
|short_description=p5@NEXN | |||
}} |
Revision as of 06:47, 12 September 2013
Short description: | p5@NEXN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_NEXN_5end |
Coexpression cluster: | C933_skeletal_heart_left_penis_Cardiac_Preadipocyte_tongue |
Association with transcript: | -139bp_to_ENST00000464998_5end |
EntrezGene: | NEXN |
HGNC: | 29557 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.30e-09 | 76 |
skin fibroblast | 2.34e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
muscle tissue | 8.00e-08 | 64 |
musculature | 8.00e-08 | 64 |
musculature of body | 8.00e-08 | 64 |
blood vessel layer | 9.02e-08 | 7 |
omentum | 1.04e-07 | 6 |
peritoneum | 1.04e-07 | 6 |
abdominal cavity | 1.04e-07 | 6 |
visceral peritoneum | 1.04e-07 | 6 |
skeletal muscle tissue | 1.92e-07 | 62 |
striated muscle tissue | 1.92e-07 | 62 |
myotome | 1.92e-07 | 62 |
dense mesenchyme tissue | 3.78e-07 | 73 |
surface structure | 6.47e-07 | 99 |
somite | 6.57e-07 | 71 |
presomitic mesoderm | 6.57e-07 | 71 |
presumptive segmental plate | 6.57e-07 | 71 |
dermomyotome | 6.57e-07 | 71 |
trunk paraxial mesoderm | 6.57e-07 | 71 |
cavity lining | 6.75e-07 | 12 |
serous membrane | 6.75e-07 | 12 |
integument | 8.13e-07 | 46 |
integumental system | 8.13e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.17e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.