FFCP PHASE1:Hg19::chr1:82165119..82165148,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23266|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18582|TSSclassifier=N|UniProt=|association_with_transcript=-306bp_to_ENST00000359929,uc001dit.3_5end|coexpression_cluster_id=C224|description=CAGE_peak_5_at_LPHN2_5end|id=chr1:82165119..82165148,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002149;4.04e-09;6!CL:0002255;4.04e-09;6!CL:0000313;2.22e-07;1!CL:0000511;3.08e-07;1!CL:0002625;3.08e-07;1!CL:0000216;3.08e-07;1|ontology_enrichment_celltype_v019_2=CL:0002149,3.42e-09,6;CL:0002255,3.42e-09,6;CL:0000313,2.22e-07,1;CL:0000511,2.99e-07,1;CL:0002625,2.99e-07,1;CL:0000216,2.99e-07,1;CL:0000066,7.82e-07,253|ontology_enrichment_development_v019=UBERON:0000358;2.82e-07;1!UBERON:0009143;5.06e-07;1|ontology_enrichment_disease=DOID:193!9.82e-12!29;DOID:120!1.65e-11!27;DOID:305!9.79e-08!106;DOID:1749!3.41e-07!14;DOID:2394!6.06e-07!14|ontology_enrichment_disease_v019=DOID:120;1.27e-09;27!DOID:3001;4.04e-09;6!DOID:193;6.79e-09;29!DOID:299;1.20e-07;25!DOID:2152;2.22e-07;1!DOID:178;2.36e-07;1!DOID:326;2.36e-07;1!DOID:3978;2.36e-07;1!DOID:3394;2.36e-07;1!DOID:5844;2.36e-07;1|ontology_enrichment_disease_v019_2=DOID:0050687,4.45e-10,143;DOID:120,1.14e-09,27;DOID:3001,3.42e-09,6;DOID:193,6.14e-09,29;DOID:305,1.03e-08,106;DOID:299,1.06e-07,25;DOID:2152,2.22e-07,1;DOID:178,2.36e-07,1;DOID:326,2.36e-07,1;DOID:3978,2.36e-07,1;DOID:3394,2.36e-07,1;DOID:5844,2.36e-07,1;DOID:162,7.29e-07,235;DOID:3111,8.98e-07,1;DOID:3603,8.98e-07,1|ontology_enrichment_uberon=UBERON:0005156!1.40e-07!59;UBERON:0000990!1.40e-07!59;UBERON:0003134!2.23e-07!37;UBERON:0000474!2.23e-07!37;UBERON:0003102!2.24e-07!95;UBERON:0000161!2.74e-07!35;UBERON:0003133!7.66e-07!48|ontology_enrichment_uberon_v019=UBERON:0004909;6.06e-13;2!UBERON:0004911;2.22e-07;1!UBERON:0001136;3.08e-07;1!UBERON:0001343;3.08e-07;1!UBERON:0004910;3.08e-07;1!UBERON:0004813;3.08e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0004909,5.89e-13,2;UBERON:0004911,2.22e-07,1;UBERON:0001136,2.99e-07,1;UBERON:0001343,2.99e-07,1;UBERON:0004910,2.99e-07,1;UBERON:0005154,2.99e-07,1;UBERON:0005295,2.99e-07,1;UBERON:0004813,2.99e-07,1;UBERON:0005297,2.99e-07,1;UBERON:0005294,2.99e-07,1;UBERON:0010141,2.99e-07,1;UBERON:0005891,2.99e-07,1|phase1_expression=0.181678379270557,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487932798790507,0,0,0,0.85870796139317,0,0.251085279189606,0,0.0821005894499457,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.25326102332916,1.85372853138506,0.286836620748814,0,0,0,0,0.311211035399766,0.134710672069688,0,0,0,0,0,0,0,0.23486899728753,0.161872944368132,0.140450806702248,0.204154171254893,0,0,0,0.247266929278557,0,0,0.168336113954066,0,0.277064115484183,0,0,0,0.113432183160021,0.179389635688862,0.213557388818567,0.211931901159562,0,0.103052529238439,0,0.18611685633159,0.168776332241266,0,0,0.184099797284599,0,0.710019185033229,0.201504196455281,0,0,0.272746120590835,0.573609190778008,0.243947412259191,0,0.348581828608555,0.207322110030741,0.756962552626885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109750285408626,0,0,0,0,0,0,1.73895607462615,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0.567100388969546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20575750823834,0.871533458600294,0.699810938274399,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315404830067869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0.61384789315225,0.280660094433074,0.640695746278505,0,0.160853921143607,0,0.154209693802656,0,0,0,0.232420756919918,0.120859449591622,0,1.47329582297434,0.114814448164607,0,0,0,0.539107359730903,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0.574265537996172,0,6.42735719376638,0,0.308097234229289,0,0,0,0,0,0,0.165284915360978,0.384380134730212,0.127612712494584,0.10115778085555,0,0,0,0.616067160352178,0.532306030317022,0,0.18532421910392,0.143124886741991,0,0,0.190630193923825,0,0,0,0,0.179872457583315,0,0,0.606547444719948,0,0,0,0.731140468893853,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485442086998054,0,0,1.90995587790152,0,0.614321404198464,0,0.140669416410513,0,0,0,0,0,0,0,0,0.933118762985422,1.61763032065188,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,2.83665218121524,0,0,0,0,0,0,0,0,0.219385397153973,0,0.697118721393016,0.384751292518985,0,2.07507513949254,0.269272933229316,2.60753692612819,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0.843992258112108,31.8303975910338,0,0,0,0,0,0,0,0,0,0,0,0,1.36965233252463,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23266 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18582 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-306bp_to_ENST00000359929,uc001dit.3_5end | |||
|coexpression_cluster_id=C224 | |||
|description=CAGE_peak_5_at_LPHN2_5end | |||
|id=chr1:82165119..82165148,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002149;4.04e-09;6!CL:0002255;4.04e-09;6!CL:0000313;2.22e-07;1!CL:0000511;3.08e-07;1!CL:0002625;3.08e-07;1!CL:0000216;3.08e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002149,3.42e-09,6;CL:0002255,3.42e-09,6;CL:0000313,2.22e-07,1;CL:0000511,2.99e-07,1;CL:0002625,2.99e-07,1;CL:0000216,2.99e-07,1;CL:0000066,7.82e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0000358;2.82e-07;1!UBERON:0009143;5.06e-07;1 | |||
|ontology_enrichment_disease=DOID:193!9.82e-12!29;DOID:120!1.65e-11!27;DOID:305!9.79e-08!106;DOID:1749!3.41e-07!14;DOID:2394!6.06e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:120;1.27e-09;27!DOID:3001;4.04e-09;6!DOID:193;6.79e-09;29!DOID:299;1.20e-07;25!DOID:2152;2.22e-07;1!DOID:178;2.36e-07;1!DOID:326;2.36e-07;1!DOID:3978;2.36e-07;1!DOID:3394;2.36e-07;1!DOID:5844;2.36e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,4.45e-10,143;DOID:120,1.14e-09,27;DOID:3001,3.42e-09,6;DOID:193,6.14e-09,29;DOID:305,1.03e-08,106;DOID:299,1.06e-07,25;DOID:2152,2.22e-07,1;DOID:178,2.36e-07,1;DOID:326,2.36e-07,1;DOID:3978,2.36e-07,1;DOID:3394,2.36e-07,1;DOID:5844,2.36e-07,1;DOID:162,7.29e-07,235;DOID:3111,8.98e-07,1;DOID:3603,8.98e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0005156!1.40e-07!59;UBERON:0000990!1.40e-07!59;UBERON:0003134!2.23e-07!37;UBERON:0000474!2.23e-07!37;UBERON:0003102!2.24e-07!95;UBERON:0000161!2.74e-07!35;UBERON:0003133!7.66e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0004909;6.06e-13;2!UBERON:0004911;2.22e-07;1!UBERON:0001136;3.08e-07;1!UBERON:0001343;3.08e-07;1!UBERON:0004910;3.08e-07;1!UBERON:0004813;3.08e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004909,5.89e-13,2;UBERON:0004911,2.22e-07,1;UBERON:0001136,2.99e-07,1;UBERON:0001343,2.99e-07,1;UBERON:0004910,2.99e-07,1;UBERON:0005154,2.99e-07,1;UBERON:0005295,2.99e-07,1;UBERON:0004813,2.99e-07,1;UBERON:0005297,2.99e-07,1;UBERON:0005294,2.99e-07,1;UBERON:0010141,2.99e-07,1;UBERON:0005891,2.99e-07,1 | |||
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|short_description=p5@LPHN2 | |||
}} |
Revision as of 06:51, 12 September 2013
Short description: | p5@LPHN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_LPHN2_5end |
Coexpression cluster: | C224_clear_serous_pleomorphic_choriocarcinoma_mesothelioma_amniotic_renal |
Association with transcript: | -306bp_to_ENST00000359929, uc001dit.3_5end |
EntrezGene: | LPHN2 |
HGNC: | 18582 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 3.42e-09 | 6 |
stromal cell of endometrium | 3.42e-09 | 6 |
serous secreting cell | 2.22e-07 | 1 |
androgen binding protein secreting cell | 2.99e-07 | 1 |
seminiferous tubule epithelial cell | 2.99e-07 | 1 |
Sertoli cell | 2.99e-07 | 1 |
epithelial cell | 7.82e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
epithelium of gonad | 5.89e-13 | 2 |
epithelium of female gonad | 2.22e-07 | 1 |
mesothelium | 2.99e-07 | 1 |
seminiferous tubule of testis | 2.99e-07 | 1 |
epithelium of male gonad | 2.99e-07 | 1 |
epithelial cord | 2.99e-07 | 1 |
sex cord | 2.99e-07 | 1 |
seminiferous tubule epithelium | 2.99e-07 | 1 |
testis sex cord | 2.99e-07 | 1 |
genital ridge | 2.99e-07 | 1 |
primitive sex cord of indifferent gonad | 2.99e-07 | 1 |
coelomic epithelium | 2.99e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 4.45e-10 | 143 |
female reproductive organ cancer | 1.14e-09 | 27 |
female reproductive endometrioid cancer | 3.42e-09 | 6 |
reproductive organ cancer | 6.14e-09 | 29 |
carcinoma | 1.03e-08 | 106 |
adenocarcinoma | 1.06e-07 | 25 |
ovary epithelial cancer | 2.22e-07 | 1 |
vascular disease | 2.36e-07 | 1 |
ischemia | 2.36e-07 | 1 |
extrinsic cardiomyopathy | 2.36e-07 | 1 |
myocardial ischemia | 2.36e-07 | 1 |
myocardial infarction | 2.36e-07 | 1 |
cancer | 7.29e-07 | 235 |
cystadenocarcinoma | 8.98e-07 | 1 |
mucinous cystadenocarcinoma | 8.98e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.